Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ENR	28277	2025-05-10	2022-09-30	3.8	4.03	3.95	7.7	0.004	0.80	0.0	0.05	14.88	0.00	2.204	17.13	0.89	0.7	99.3	0.0	1.04	0.43	0.37	0.94	4.2	0.006	1.00	0.0	0.05	17.54	0.00	2.457	21.66	3.42	11.1	88.9	0.0	-3.05	2.47	0.50	0.49	2.37	6392	888	8	0	0	0	0	logfile
✔	8H0Y	34418	2025-05-24	2022-09-30	2.85	3.06	2.88	3.0	0.008	0.90	0.0	0.06	13.44	0.01	2.274	2.60	0.00	3.2	96.8	0.0	-1.19	0.81	0.86	3.68	3.0	0.006	0.67	0.0	0.05	14.61	0.00	2.442	3.11	1.49	3.6	96.4	0.0	-0.25	1.13	0.82	0.88	3.45	24999	3094	6	0	52	0	0	logfile
✔	8H16	34426	2025-05-21	2022-09-30	3.35534	3.37	3.29	3.4	0.006	0.91	0.0	0.06	13.41	0.01	2.223	3.00	0.00	3.0	97.0	0.0	-0.98	0.75	0.83	3.12	3.4	0.003	0.58	0.0	0.05	14.27	0.00	2.581	3.34	2.18	3.2	96.8	0.0	0.05	1.40	0.75	0.85	2.68	21934	2754	6	0	32	0	0	logfile
✔	8H12	34422	2025-05-23	2022-09-30	3.44681	3.52	3.41	3.5	0.006	0.87	0.0	0.06	13.96	0.01	2.253	2.68	0.00	4.0	96.0	0.0	-2.04	0.71	0.84	3.55	3.5	0.003	0.59	0.0	0.05	14.92	0.00	2.543	3.66	1.98	2.9	97.1	0.0	-0.61	0.32	0.72	0.85	2.96	24221	3022	9	0	45	0	0	logfile
✔	8H13	34423	2025-05-22	2022-09-30	4.05	4.03	4.00	4.0	0.005	0.87	0.0	0.05	14.19	0.01	2.254	3.85	0.83	5.0	95.0	0.0	-1.27	0.76	0.79	—	4.0	0.004	0.66	0.0	0.04	13.73	0.00	2.510	6.04	0.00	4.3	95.7	0.0	-0.45	0.42	0.76	0.79	—	22113	2793	6	0	21	0	0	logfile
✔	8H11	34421	2025-05-23	2022-09-30	2.72	2.91	2.73	2.9	0.006	0.91	0.0	0.06	12.52	0.01	2.250	2.67	0.04	3.4	96.6	0.0	-1.16	0.79	0.85	3.06	2.9	0.004	0.63	0.0	0.05	14.09	0.00	2.504	3.44	1.64	3.3	96.7	0.0	-0.05	0.29	0.79	0.86	2.90	23566	2945	7	0	39	0	0	logfile
✔	8H0Z	34419	2025-05-24	2022-09-30	2.99	3.23	3.00	3.1	0.008	0.98	0.0	0.06	12.60	0.01	2.229	3.18	0.00	4.5	95.5	0.0	-1.47	0.81	0.85	3.39	3.2	0.003	0.62	0.0	0.05	13.77	0.00	2.479	3.50	1.45	3.7	96.3	0.0	-0.27	0.35	0.81	0.86	3.05	25047	3102	9	0	51	0	0	logfile
✔	8H0X	34417	2025-05-24	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.96	0.0	0.06	12.82	0.01	2.257	1.76	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	2.7	0.003	0.66	0.0	0.05	13.96	0.00	2.360	2.65	1.82	3.2	96.8	0.0	-0.09	1.60	0.82	0.88	3.64	25122	3117	6	0	48	0	0	logfile
✔	8H0P	34413	2025-05-12	2022-09-30	3.15	2.98	3.06	3.2	0.001	0.40	0.0	0.04	7.54	0.00	2.208	5.68	0.10	1.2	98.8	0.0	-2.49	0.52	0.65	1.60	3.2	0.003	0.58	0.0	0.04	13.68	0.00	2.559	8.37	1.73	2.8	97.2	0.0	-0.18	0.78	0.57	0.78	2.63	8932	1137	6	0	0	0	0	logfile
✔	8ENC	28270	2025-05-22	2022-09-29	3.6	4.10	3.53	3.6	0.003	0.57	0.0	0.04	14.18	0.00	1.869	7.14	0.08	3.0	97.0	0.0	1.79	0.60	0.87	1.67	3.6	0.004	0.63	0.0	0.04	15.57	0.00	1.942	7.10	0.80	2.8	97.2	0.0	1.98	0.43	0.61	0.88	1.52	23220	2929	13	0	10	0	0	logfile
✔	8H0i	34412	2025-05-17	2022-09-29	2.8	4.11	2.76	3.2	0.004	0.60	2.0	0.05	14.23	0.00	2.198	7.70	0.81	2.6	97.4	0.0	0.39	0.85	0.78	3.60	3.3	0.004	0.79	0.0	0.04	16.01	0.00	2.131	7.59	1.41	3.1	96.9	0.0	0.95	0.76	0.90	0.87	3.33	15018	1710	14	38	6	0	0	logfile
✔	8ENE	28271	2025-05-17	2022-09-29	2.64	3.16	2.80	3.1	0.005	0.60	0.0	0.04	12.54	0.00	2.262	5.76	2.15	2.6	97.4	0.0	0.46	0.74	0.77	2.90	3.1	0.004	0.96	2.0	0.04	15.92	0.00	2.177	6.08	3.68	3.5	96.4	0.1	0.63	1.17	0.64	0.76	2.84	15404	1972	8	0	4	0	0	logfile
✔	8B71	15895	2025-05-12	2022-09-28	3.8	3.80	3.64	3.9	0.005	0.71	0.0	0.05	17.41	0.01	2.129	12.04	0.00	5.1	94.9	0.0	0.64	0.67	0.81	1.45	3.9	0.003	0.63	0.0	0.04	18.57	0.00	2.445	13.34	1.62	3.5	96.5	0.0	1.43	0.34	0.66	0.80	1.28	8694	1104	4	0	2	0	0	logfile
✔	8EMS	28263	2025-05-15	2022-09-28	2.65	2.85	2.62	2.9	0.005	0.53	0.0	0.04	13.28	0.00	2.217	7.84	0.15	3.6	96.4	0.0	-0.04	0.64	0.70	2.45	2.8	0.003	0.55	0.0	0.04	16.23	0.00	2.509	7.13	1.69	3.6	96.4	0.0	0.76	0.39	0.63	0.70	2.24	12688	1560	4	0	2	0	0	logfile
✔	8B70	15894	2025-05-12	2022-09-28	3.3	2.85	3.11	3.3	0.007	1.02	0.0	0.06	20.78	0.00	2.148	8.20	0.84	4.8	95.2	0.0	1.55	0.40	0.68	1.87	3.2	0.003	0.59	0.0	0.04	16.00	0.00	2.470	7.57	1.98	3.8	96.2	0.0	2.45	0.93	0.58	0.85	1.60	9258	1144	4	0	12	0	0	logfile
✔	8EMW	28267	2025-05-21	2022-09-28	3.5	3.87	3.57	3.9	0.008	0.91	1.0	0.06	15.24	0.01	2.248	6.63	0.00	6.1	93.9	0.0	-5.07	0.68	0.81	2.38	3.9	0.003	0.65	0.0	0.04	16.99	0.00	2.315	7.28	2.37	3.8	96.2	0.0	-2.08	1.29	0.70	0.82	1.59	11714	1506	6	0	1	0	0	logfile
✔	8EMV	28266	2025-05-13	2022-09-28	3.6	3.24	3.56	3.5	0.007	0.81	0.0	0.05	15.16	0.01	2.339	3.11	0.00	6.5	93.5	0.0	-4.26	0.71	0.84	2.37	3.5	0.002	0.56	0.0	0.04	16.45	0.00	2.478	3.37	1.83	3.4	96.6	0.0	-0.15	1.16	0.71	0.84	1.85	5949	747	2	0	1	0	0	logfile
✔	8EMX	28268	2025-05-21	2022-09-28	3.3	3.62	3.43	3.6	0.006	0.81	0.0	0.05	15.14	0.01	2.263	4.73	0.00	5.0	95.0	0.0	-4.74	0.73	0.83	2.54	3.6	0.002	0.59	0.0	0.04	16.62	0.00	2.372	5.42	2.37	3.7	96.3	0.0	-2.14	0.95	0.74	0.86	1.70	11714	1506	6	0	1	0	0	logfile
✔	8H00	34407	2025-05-28	2022-09-27	3.41	3.86	3.29	3.6	0.005	0.63	0.0	0.05	13.25	0.00	2.184	7.71	0.00	3.6	96.4	0.1	-0.21	0.84	0.86	3.20	3.6	0.003	0.58	0.0	0.04	14.33	0.00	2.469	5.36	1.25	3.3	96.7	0.1	-0.07	0.37	0.84	0.88	2.69	30181	3803	27	0	45	0	0	logfile
✔	8GZZ	34406	2025-05-10	2022-09-27	3.52	3.89	3.45	3.7	0.004	0.62	0.0	0.04	12.19	0.00	2.248	8.72	0.00	5.0	95.0	0.0	-0.99	0.78	0.86	3.03	3.7	0.004	0.62	0.0	0.04	14.14	0.00	2.410	6.54	2.11	4.6	95.4	0.0	-1.46	0.48	0.78	0.86	3.16	6568	854	6	0	0	0	0	logfile

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