Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H01	34408	2025-05-28	2022-09-27	3.7	4.17	3.57	3.7	0.004	0.63	0.0	0.05	13.23	0.00	2.203	9.28	0.00	3.8	96.1	0.1	-0.08	0.85	0.84	2.22	3.7	0.005	0.75	1.0	0.04	14.29	0.00	2.299	9.58	0.98	4.4	95.6	0.0	-0.49	0.37	0.85	0.86	1.88	30144	3803	27	0	44	0	0	logfile
✔	8GZZ	34406	2025-05-10	2022-09-27	3.52	3.89	3.45	3.7	0.004	0.62	0.0	0.04	12.19	0.00	2.248	8.72	0.00	5.0	95.0	0.0	-0.99	0.78	0.86	3.03	3.7	0.004	0.62	0.0	0.04	14.14	0.00	2.410	6.54	2.11	4.6	95.4	0.0	-1.46	0.48	0.78	0.86	3.16	6568	854	6	0	0	0	0	logfile
✔	8GZ7	34391	2025-05-18	2022-09-26	3.5	3.85	3.63	3.8	0.012	1.67	6.0	0.13	24.08	0.01	1.693	4.61	32.81	5.8	93.4	0.8	-1.19	0.62	0.80	3.08	3.8	0.003	0.61	0.0	0.04	17.48	0.00	2.482	5.36	4.23	3.5	96.2	0.3	-0.19	1.81	0.66	0.84	3.18	17474	2136	8	0	0	0	0	logfile
✔	8GZ8	34392	2025-05-09	2022-09-26	2.35	2.27	2.10	2.5	0.005	0.73	0.0	0.06	14.15	0.00	2.500	6.32	0.00	0.5	99.5	0.0	-0.71	0.43	0.88	4.53	2.6	0.002	0.54	0.0	0.06	14.73	0.00	2.660	3.79	3.25	2.1	97.9	0.0	-0.49	1.20	0.42	0.89	4.53	3336	540	71	0	0	20	0	logfile
✔	8GZ9	34393	2025-05-09	2022-09-26	2.62	2.44	2.40	2.4	0.003	0.69	0.0	0.06	14.01	0.00	2.670	1.93	0.00	0.3	99.7	0.0	-0.15	0.28	0.90	7.26	2.4	0.001	0.52	0.0	0.06	13.89	0.00	2.680	1.74	0.44	0.9	99.1	0.0	0.42	0.26	0.28	0.90	7.78	2426	390	58	0	0	24	0	logfile
✔	8B64	15862	2025-05-22	2022-09-26	2.589	2.35	2.43	2.5	0.024	4.46	0.0	0.04	21.09	0.00	1.980	8.44	1.19	0.8	99.2	0.0	3.50	0.67	0.88	4.98	2.5	0.010	1.09	0.0	0.04	19.89	0.00	1.969	6.60	1.52	0.9	99.1	0.0	3.37	0.32	0.66	0.89	4.70	21678	2249	66	0	75	0	0	logfile
✔	8GZ3	34389	2025-05-12	2022-09-24	3.3	3.13	—	3.1	0.012	1.46	3.0	0.10	15.00	0.01	2.142	5.81	1.74	1.8	98.2	0.0	-0.20	0.63	0.77	2.77	3.1	0.004	0.59	0.0	0.03	14.08	0.00	2.495	4.44	1.11	1.3	98.7	0.0	0.90	1.19	0.71	0.83	3.22	8542	789	7	0	434	1	0	logfile
✔	8GZ1	34387	2025-05-15	2022-09-24	3.4	3.77	3.45	3.7	0.009	0.82	0.0	0.05	17.16	0.00	1.940	11.26	0.00	5.0	95.0	0.0	0.65	0.55	0.77	2.03	3.7	0.003	0.66	0.0	0.04	15.96	0.00	2.302	8.49	2.42	5.1	94.9	0.0	1.06	0.55	0.56	0.80	1.62	11912	1445	10	0	19	0	0	logfile
✔	8ELJ	28228	2025-05-27	2022-09-24	3.6	4.25	—	3.9	0.012	1.80	51.0	0.12	13.28	0.01	1.083	10.89	1.03	4.8	95.1	0.1	-0.94	0.86	0.86	2.03	3.9	0.004	0.70	0.0	0.04	14.01	0.01	2.326	6.19	1.25	4.5	95.5	0.0	-0.02	1.24	0.86	0.86	1.93	29463	3690	24	0	54	0	0	logfile
✔	8GYW	34378	2025-05-10	2022-09-24	3.9	3.93	3.72	4.0	0.008	1.46	0.0	0.08	16.78	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	4.0	0.003	0.70	0.0	0.04	16.57	0.00	1.273	12.05	4.68	1.5	98.5	0.0	2.61	1.24	0.49	0.76	0.67	6076	760	4	0	6	0	0	logfile
✔	8GYX	34379	2025-05-10	2022-09-24	3.7	3.91	3.69	3.9	0.007	1.36	0.0	0.07	16.07	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.003	0.68	0.0	0.04	16.72	0.00	1.668	9.79	4.08	1.7	98.3	0.0	2.69	0.61	0.52	0.78	1.60	6118	760	4	0	6	0	0	logfile
✔	8GYT	34377	2025-05-20	2022-09-23	3.68	3.73	3.42	3.7	0.003	0.66	0.0	0.03	16.93	0.00	1.982	7.70	0.09	6.1	93.6	0.3	1.96	0.68	0.77	1.54	3.7	0.003	0.77	0.0	0.04	16.90	0.00	2.569	7.69	3.90	5.3	94.4	0.3	1.81	1.00	0.69	0.78	1.60	19503	2450	14	0	7	0	0	logfile
✔	8EL9	28225	2025-05-19	2022-09-23	2.27	2.39	2.29	2.4	0.003	0.65	0.0	0.05	17.09	0.01	2.197	3.40	1.23	2.5	97.5	0.0	0.05	0.75	0.85	4.95	2.4	0.004	0.80	1.0	0.05	16.87	0.00	2.310	4.56	1.28	2.3	97.7	0.0	0.66	1.11	0.74	0.85	5.10	17429	1990	12	0	8	1015	0	logfile
✔	8EL7	28223	2025-05-10	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.002	0.43	0.0	0.04	14.75	0.00	2.623	1.55	1.52	1.6	98.4	0.0	1.92	0.25	0.57	0.80	2.18	4562	604	3	0	0	5	0	logfile
✔	8EL8	28224	2025-05-10	2022-09-23	3.2	3.53	3.32	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.002	0.46	0.0	0.04	15.23	0.00	2.631	1.70	0.68	2.3	97.7	0.0	1.60	0.27	0.66	0.85	1.75	4467	597	2	0	0	0	0	logfile
✔	8GYQ	34376	2025-05-20	2022-09-23	3.4	3.91	3.45	3.9	0.003	0.78	0.0	0.04	17.63	0.00	1.840	7.37	0.66	7.3	92.6	0.2	0.23	0.62	0.75	1.43	3.9	0.003	0.67	0.0	0.04	18.13	0.00	2.427	7.55	3.95	4.6	95.4	0.0	0.98	0.43	0.62	0.78	1.33	19712	2422	14	0	7	0	0	logfile
✔	8GYo	34374	2025-05-19	2022-09-23	3.8	3.99	3.65	4.0	0.004	0.73	0.0	0.74	28.23	0.00	1.882	8.41	0.33	5.0	95.0	0.0	0.95	0.53	0.70	1.28	4.0	0.003	1.16	1.0	0.08	19.70	0.00	2.378	8.23	3.72	6.0	94.0	0.0	1.33	1.22	0.61	0.74	0.89	19253	2337	14	0	13	0	0	logfile
✔	8GYP	34375	2025-05-20	2022-09-23	3.5	3.83	3.38	3.8	0.003	0.74	0.0	0.03	17.32	0.00	2.040	10.71	0.09	7.2	92.4	0.3	0.70	0.67	0.76	1.79	3.8	0.005	0.80	0.0	0.04	17.34	0.00	2.519	6.87	4.92	5.7	93.9	0.3	1.36	1.25	0.67	0.76	1.62	19538	2450	14	0	7	0	0	logfile
✔	8EKY	28217	2025-05-25	2022-09-22	3.47	4.00	3.79	3.9	0.004	0.68	1.0	0.05	14.66	0.00	2.211	6.02	0.00	3.2	96.8	0.1	-0.33	0.76	0.83	3.13	3.9	0.004	0.63	0.0	0.05	16.54	0.00	2.275	6.92	1.95	4.2	95.8	0.0	0.35	1.14	0.76	0.85	2.91	14605	1815	11	0	0	0	0	logfile
✔	8EKW	28214	2025-05-24	2022-09-22	2.83	3.09	2.97	3.1	0.006	0.66	3.0	0.05	13.69	0.01	2.207	4.83	0.26	3.2	96.8	0.0	0.13	0.70	0.82	4.31	3.1	0.003	0.53	0.0	0.04	16.89	0.00	2.541	2.92	1.29	3.2	96.8	0.0	0.98	1.20	0.73	0.86	3.43	14552	1760	20	0	0	402	0	logfile

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