Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EKW	28214	2025-05-24	2022-09-22	2.83	3.09	2.97	3.1	0.006	0.66	3.0	0.05	13.69	0.01	2.207	4.83	0.26	3.2	96.8	0.0	0.13	0.70	0.82	4.31	3.1	0.003	0.53	0.0	0.04	16.89	0.00	2.541	2.92	1.29	3.2	96.8	0.0	0.98	1.20	0.73	0.86	3.43	14552	1760	20	0	0	402	0	logfile
✔	8EKP	28209	2025-05-20	2022-09-21	2.75	2.30	2.90	98.0	0.004	0.87	0.0	0.04	14.70	0.01	2.269	3.50	0.00	1.3	98.7	0.0	-2.94	0.53	0.84	3.56	97.0	0.003	0.56	0.0	0.04	16.78	0.00	2.593	5.56	1.83	1.8	98.2	0.0	1.37	1.10	0.53	0.85	3.27	20448	2488	8	0	8	0	0	logfile
✔	8EKL	28206	2025-05-19	2022-09-21	3.06	3.28	3.26	3.3	0.003	0.47	0.0	0.04	18.45	0.00	2.117	5.10	0.18	3.4	96.6	0.0	-0.87	0.72	0.90	4.06	3.3	0.002	0.49	0.0	0.04	18.56	0.00	2.242	3.71	3.73	3.5	96.5	0.0	-0.64	0.17	0.71	0.90	4.11	19334	2485	14	0	14	0	0	logfile
✔	8EKK	28205	2025-05-27	2022-09-21	3.28	3.66	3.37	3.6	0.002	0.48	0.0	0.04	17.36	0.00	2.191	5.91	0.15	4.5	95.5	0.0	-1.12	0.79	0.88	3.00	3.6	0.002	0.52	0.0	0.04	17.77	0.00	2.209	4.54	2.27	3.7	96.3	0.0	-0.42	0.24	0.80	0.87	2.74	29624	3731	14	0	14	0	0	logfile
✔	8EKS	28212	2025-05-20	2022-09-21	3.1	3.47	3.17	3.5	0.003	0.62	0.0	0.04	13.55	0.00	2.215	3.64	0.00	1.9	98.1	0.0	-2.29	0.72	0.84	3.39	3.5	0.002	0.47	0.0	0.03	14.94	0.00	2.627	4.76	1.31	1.8	98.2	0.0	2.12	0.35	0.65	0.83	3.17	20484	2504	8	0	4	0	0	logfile
✔	8GXX	34364	2025-05-27	2022-09-21	3.0	2.61	3.12	2.9	0.006	0.56	0.0	0.04	11.84	0.00	1.758	5.57	0.06	3.0	96.9	0.0	0.65	0.67	0.82	3.77	2.8	0.004	0.63	0.0	0.04	17.00	0.01	1.922	6.55	2.50	2.3	97.7	0.0	0.80	1.08	0.72	0.85	3.19	29553	3788	15	0	5	0	0	logfile
✔	8GY7	34371	2025-05-11	2022-09-21	3.3	2.37	3.33	2.2	0.005	0.84	2.0	0.05	15.85	0.01	2.006	10.67	0.96	4.7	95.3	0.0	0.27	0.76	0.77	2.61	2.0	0.004	0.69	0.0	0.04	16.92	0.00	2.252	10.15	3.96	4.3	95.7	0.0	0.60	0.44	0.76	0.79	2.66	7661	968	7	0	1	0	0	logfile
✔	8GXZ	34366	2025-05-27	2022-09-21	3.1	2.45	3.14	3.0	0.006	0.54	0.0	0.04	13.92	0.00	1.826	6.59	0.00	4.2	95.8	0.0	0.46	0.54	0.74	3.39	3.0	0.003	0.57	0.0	0.04	16.44	0.00	1.913	6.36	2.53	2.3	97.7	0.0	0.74	1.75	0.66	0.83	2.90	29499	3788	14	0	3	0	0	logfile
✔	8GXW	34363	2025-05-27	2022-09-21	2.7	2.30	2.77	2.5	0.006	0.55	0.0	0.04	14.20	0.00	1.843	5.14	0.00	2.4	97.6	0.0	0.98	0.66	0.81	3.89	2.5	0.004	0.63	0.0	0.05	17.43	0.00	1.969	6.39	2.56	2.0	97.9	0.0	0.97	1.09	0.71	0.84	3.69	29530	3788	15	0	4	0	0	logfile
✔	8GXY	34365	2025-05-27	2022-09-21	2.8	2.43	2.79	2.7	0.005	0.52	0.0	0.04	14.57	0.00	1.951	5.20	0.03	2.1	97.9	0.0	0.94	0.63	0.82	4.11	2.7	0.004	0.62	0.0	0.05	17.65	0.01	2.506	5.99	3.34	2.0	98.0	0.0	1.06	0.68	0.71	0.87	3.60	29472	3788	14	0	2	0	0	logfile
✔	8GXU	34362	2025-05-27	2022-09-21	2.5	2.02	2.54	2.3	0.007	0.57	0.0	0.05	14.57	0.01	1.855	4.64	0.00	3.2	96.8	0.0	0.82	0.64	0.79	4.52	2.2	0.003	0.61	0.0	0.04	17.46	0.01	2.513	5.87	1.95	2.3	97.7	0.0	1.04	1.35	0.70	0.83	4.09	29503	3788	15	0	3	0	0	logfile
✔	8GY2	34368	2025-05-13	2022-09-21	2.5	3.19	2.57	3.0	0.008	0.67	0.0	0.04	17.18	0.00	1.759	7.33	2.88	6.8	93.2	0.0	-0.26	0.80	0.89	4.02	3.0	0.005	0.64	0.0	0.04	16.95	0.00	2.217	4.90	1.79	5.8	94.2	0.0	0.03	0.26	0.80	0.89	4.08	9943	1264	5	0	7	0	0	logfile
✔	8EKR	28211	2025-05-20	2022-09-21	3.0	2.81	3.16	98.0	0.004	0.80	0.0	0.04	14.01	0.01	2.292	5.46	0.38	3.6	96.4	0.0	-1.13	0.51	0.83	3.05	98.0	0.003	0.57	0.0	0.04	16.97	0.00	2.454	6.54	2.20	2.9	97.1	0.0	1.47	0.46	0.52	0.85	2.44	19712	2452	8	0	4	0	0	logfile
✔	8B4H	15848	2025-05-28	2022-09-20	3.35	3.33	3.31	3.4	0.004	0.71	0.0	0.04	22.55	0.01	2.084	11.08	0.00	2.7	97.3	0.0	-0.27	0.64	0.65	2.33	3.4	0.003	0.57	0.0	0.04	22.45	0.00	1.890	6.58	0.77	3.6	96.4	0.0	-0.36	1.22	0.67	0.72	2.61	31138	1440	10	224	2	0	14570	logfile
✔	8B4i	15849	2025-05-12	2022-09-20	3.32	3.85	3.37	3.7	0.004	0.62	0.0	0.04	16.41	0.00	2.205	3.85	0.24	1.5	98.5	0.0	0.59	0.62	0.85	3.66	3.6	0.004	0.67	0.0	0.04	14.03	0.00	2.514	5.93	1.34	2.2	97.8	0.0	1.45	1.02	0.60	0.83	2.97	8242	1026	14	0	9	0	0	logfile
✔	8EKD	28199	2025-05-10	2022-09-20	3.6	3.11	3.47	3.0	0.005	0.88	0.0	0.05	19.66	0.01	2.190	21.00	1.77	6.3	93.7	0.0	-1.67	0.49	0.63	1.30	3.1	0.004	0.76	0.0	0.04	17.41	0.01	2.492	16.90	5.90	7.0	93.0	0.0	-1.33	1.35	0.50	0.64	1.42	3239	411	4	0	1	0	0	logfile
✔	8EKA	28196	2025-05-10	2022-09-20	3.7	4.02	3.72	3.9	0.003	0.68	0.0	0.04	17.36	0.00	2.209	7.61	0.26	12.3	87.4	0.3	-1.98	0.78	0.85	2.25	3.9	0.004	0.73	0.0	0.05	17.58	0.00	2.493	7.25	3.09	13.5	86.3	0.2	-1.97	0.34	0.78	0.85	2.53	7023	905	7	0	0	0	0	logfile
✔	8B41	15836	2025-05-28	2022-09-19	3.8	3.07	3.31	3.7	0.002	0.48	0.0	0.04	11.83	0.00	2.169	9.52	4.69	3.6	96.4	0.0	-0.49	0.78	0.77	1.42	3.7	0.005	0.71	1.0	0.04	14.80	0.00	2.102	10.72	4.15	4.4	95.6	0.0	-0.33	0.70	0.78	0.78	1.22	31259	3805	10	0	0	0	0	logfile
✔	8EK1	28192	2025-05-13	2022-09-19	3.6	3.91	3.66	3.8	0.004	0.74	0.0	0.05	15.72	0.00	2.185	9.39	0.53	9.2	90.3	0.5	-1.95	0.80	0.83	2.83	3.8	0.004	0.74	0.0	0.05	16.57	0.00	2.435	7.00	4.11	10.8	89.2	0.0	-1.98	1.00	0.80	0.84	2.78	8497	1102	7	0	0	0	0	logfile
✔	8GWi	34313	2025-05-22	2022-09-17	3.18	3.41	3.21	3.4	0.009	0.95	5.0	0.06	18.83	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.52	0.32	3.4	0.005	0.85	2.0	0.04	18.07	0.01	2.095	10.30	2.15	7.2	92.7	0.2	-1.16	1.23	0.79	0.85	1.96	21955	2668	13	52	9	1	0	logfile

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