Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GWN	34317	2025-05-22	2022-09-17	3.38	3.97	3.47	3.7	0.016	1.26	0.0	0.06	19.48	0.01	1.979	38.61	14.07	23.5	75.0	1.5	-6.16	0.86	0.83	1.87	3.7	0.007	0.87	0.0	0.05	18.32	0.00	2.028	15.00	3.62	10.4	89.4	0.2	-2.63	0.52	0.87	0.85	1.80	21860	2655	12	52	9	0	0	logfile
✔	8GWG	34312	2025-05-22	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.95	5.0	0.06	18.83	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.5	0.003	0.87	0.0	0.04	18.57	0.00	2.092	16.66	2.63	8.1	91.8	0.2	-2.08	1.76	0.76	0.61	0.17	21955	2668	13	52	9	1	0	logfile
✔	8GWF	34311	2025-05-22	2022-09-17	3.39	3.99	3.49	3.6	0.009	0.95	5.0	0.06	18.83	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.84	0.76	1.55	3.6	0.005	0.82	0.0	0.04	18.12	0.00	1.423	12.19	2.99	7.4	92.4	0.2	-1.31	1.43	0.86	0.83	1.75	21955	2668	13	52	9	1	0	logfile
✔	8EJL	28186	2025-05-21	2022-09-17	3.9	4.30	3.90	4.1	0.005	0.54	0.0	0.04	11.63	0.00	0.636	9.14	3.04	2.2	97.8	0.0	1.75	0.68	0.85	1.79	4.1	0.004	0.66	0.0	0.04	14.76	0.00	2.471	7.46	2.39	1.7	98.3	0.0	2.10	1.22	0.68	0.85	1.26	22155	3095	30	0	0	0	0	logfile
✔	8GWK	34314	2025-05-21	2022-09-17	2.72	3.02	2.84	2.9	0.010	1.19	10.0	0.06	19.63	0.01	1.578	19.11	6.32	9.5	90.3	0.2	-2.97	0.63	0.72	2.50	2.9	0.003	0.69	0.0	0.04	18.84	0.00	2.038	8.72	2.41	5.0	94.9	0.1	-1.52	1.09	0.74	0.85	2.07	21949	2663	15	51	11	6	0	logfile
✔	8GWo	34318	2025-05-22	2022-09-17	3.8	4.21	3.91	4.0	0.008	0.83	0.0	0.05	16.54	0.01	1.755	15.73	0.66	8.8	91.1	0.1	-2.55	0.81	0.82	1.08	4.0	0.003	0.66	0.0	0.04	16.87	0.00	2.120	9.85	1.99	7.7	92.3	0.0	-1.51	0.49	0.82	0.83	0.93	21880	2655	12	53	9	0	0	logfile
✔	8EJK	28185	2025-05-12	2022-09-17	3.4	3.54	3.44	3.5	0.004	0.61	1.0	0.05	14.17	0.00	2.152	9.07	0.11	3.1	96.9	0.0	0.74	0.72	0.83	2.20	3.5	0.003	0.61	0.0	0.04	15.88	0.00	2.538	7.42	2.24	3.3	96.7	0.0	1.07	0.39	0.73	0.85	1.85	8594	1124	6	0	1	0	0	logfile
✔	8B3J	15830	2025-05-10	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.52	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.003	0.60	0.0	0.04	16.28	0.00	2.495	4.56	2.75	6.5	93.5	0.0	-2.18	0.27	0.43	0.87	2.87	5688	718	3	0	0	0	0	logfile
✔	8EJH	28182	2025-05-17	2022-09-16	3.71	4.24	3.86	4.0	0.022	1.91	0.0	0.15	17.28	0.01	2.321	2.57	0.00	5.7	94.3	0.0	-0.18	0.78	0.78	2.12	4.0	0.003	0.80	0.0	0.04	14.05	0.00	2.492	8.00	2.34	5.1	94.7	0.1	-0.25	1.87	0.76	0.76	2.13	15186	1761	45	0	99	0	0	logfile
✔	8EJ5	28176	2025-05-10	2022-09-16	4.9	4.58	4.61	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.003	0.79	0.0	0.05	14.30	0.00	2.353	13.29	0.00	3.5	96.2	0.3	-0.13	1.89	0.46	0.75	—	5818	727	4	0	0	0	0	logfile
✔	8EJG	28181	2025-05-13	2022-09-16	3.13	3.83	3.14	3.5	0.026	2.06	3.0	0.17	20.95	0.01	2.106	0.88	0.00	6.4	93.6	0.0	-1.09	0.86	0.81	3.20	3.5	0.005	1.04	0.0	0.05	14.29	0.00	2.346	8.33	1.76	8.5	91.1	0.4	-0.94	1.50	0.86	0.82	2.84	9966	1083	36	0	102	0	0	logfile
✔	8GW1	34302	2025-05-21	2022-09-16	3.31	3.92	—	3.7	0.006	0.78	1.0	0.06	18.10	0.01	1.712	15.92	0.53	5.8	94.0	0.2	-1.96	0.79	0.72	1.66	3.7	0.012	0.81	0.0	0.04	18.32	0.01	1.964	12.27	3.88	7.1	92.8	0.1	-1.48	0.44	0.82	0.81	1.61	21843	2656	14	52	10	3	0	logfile
✔	8EJE	28179	2025-05-13	2022-09-16	3.69	3.95	3.70	3.8	0.024	2.24	0.0	0.16	15.07	0.01	2.317	2.39	0.00	6.0	94.0	0.0	-0.11	0.82	0.79	2.65	3.8	0.005	1.06	0.0	0.05	15.70	0.00	2.410	12.29	3.89	9.3	90.7	0.0	-0.81	1.02	0.81	0.79	2.16	9426	1068	33	0	66	0	0	logfile
✔	8B3A	15824	2025-05-09	2022-09-16	3.8	3.66	2.49	4.1	0.015	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.140	5.89	22.0	0.41	23.11	0.05	1.857	277.96	47.62	64.0	4.7	31.3	-10.73	2.44	0.38	0.50	2.70	2010	210	60	0	60	0	0	logfile
✔	8GW7	34304	2025-05-11	2022-09-16	3.3	3.48	3.36	3.8	0.004	0.79	0.0	0.06	14.00	0.01	2.220	5.74	0.39	1.3	98.7	0.0	1.51	0.61	0.78	1.67	3.7	0.003	0.66	0.0	0.04	15.67	0.00	2.601	6.48	3.79	2.3	97.7	0.0	2.36	1.31	0.62	0.80	1.78	7524	945	6	0	9	0	0	logfile
✔	8EJF	28180	2025-05-13	2022-09-16	3.72	4.47	3.85	3.9	0.025	2.10	0.0	0.16	17.18	0.01	2.299	2.10	0.00	9.0	91.0	0.0	-1.87	0.85	0.78	2.04	4.0	0.004	0.95	0.0	0.05	14.32	0.00	2.407	13.81	1.66	13.3	86.1	0.6	-2.13	1.44	0.88	0.81	1.94	9801	1080	36	0	90	0	0	logfile
✔	8EJC	28177	2025-05-12	2022-09-16	3.0	3.01	3.00	3.1	0.006	0.64	0.0	0.04	13.37	0.00	2.199	9.48	0.00	3.6	96.4	0.0	1.20	0.69	0.84	3.08	3.1	0.003	0.63	0.0	0.04	16.03	0.00	2.558	6.73	1.55	2.6	97.4	0.0	1.47	0.39	0.69	0.85	2.03	8659	1132	6	0	1	0	0	logfile
✔	8EJD	28178	2025-05-13	2022-09-16	3.8	4.33	3.84	4.1	0.022	1.93	0.0	0.17	17.20	0.02	2.400	2.31	0.00	4.7	95.3	0.0	-0.17	0.83	0.78	2.34	4.1	0.005	0.98	0.0	0.05	14.20	0.00	2.370	12.44	1.97	9.1	90.9	0.0	-0.11	1.90	0.84	0.79	2.03	9804	1086	36	0	87	0	0	logfile
✔	8GVX	34301	2025-05-30	2022-09-16	3.91	4.24	—	3.7	0.008	1.01	4.0	0.06	16.27	0.01	2.033	11.61	0.68	2.1	97.9	0.0	-0.99	0.79	0.69	1.27	3.7	0.002	0.59	0.0	0.04	16.08	0.00	2.335	5.73	0.59	2.5	97.5	0.0	2.60	0.61	0.84	0.81	0.93	32872	3964	16	0	24	0	0	logfile
✔	8GW6	34303	2025-05-12	2022-09-16	3.3	3.39	3.36	3.7	0.004	0.60	0.0	0.05	12.88	0.00	2.397	20.00	0.65	2.2	97.8	0.0	0.70	0.59	0.80	2.71	3.7	0.002	0.60	0.0	0.04	15.20	0.00	2.562	5.04	0.86	3.1	96.9	0.0	1.08	0.96	0.56	0.79	1.49	8883	1101	6	0	6	0	0	logfile

• ← previous
• Page 305 of 642
• next →