Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EJH	28182	2025-05-17	2022-09-16	3.71	4.24	3.86	4.0	0.022	1.91	0.0	0.15	17.28	0.01	2.321	2.57	0.00	5.7	94.3	0.0	-0.18	0.78	0.78	2.12	4.0	0.003	0.80	0.0	0.04	14.05	0.00	2.492	8.00	2.34	5.1	94.7	0.1	-0.25	1.87	0.76	0.76	2.13	15186	1761	45	0	99	0	0	logfile
✔	8GW6	34303	2025-05-12	2022-09-16	3.3	3.39	3.36	3.7	0.004	0.60	0.0	0.05	12.88	0.00	2.397	20.00	0.65	2.2	97.8	0.0	0.70	0.59	0.80	2.71	3.7	0.002	0.60	0.0	0.04	15.20	0.00	2.562	5.04	0.86	3.1	96.9	0.0	1.08	0.96	0.56	0.79	1.49	8883	1101	6	0	6	0	0	logfile
✔	8GVX	34301	2025-05-30	2022-09-16	3.91	4.24	—	3.7	0.008	1.01	4.0	0.06	16.27	0.01	2.033	11.61	0.68	2.1	97.9	0.0	-0.99	0.79	0.69	1.27	3.7	0.002	0.59	0.0	0.04	16.08	0.00	2.335	5.73	0.59	2.5	97.5	0.0	2.60	0.61	0.84	0.81	0.93	32872	3964	16	0	24	0	0	logfile
✔	8EJ5	28176	2025-05-10	2022-09-16	4.9	4.58	4.61	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.003	0.79	0.0	0.05	14.30	0.00	2.353	13.29	0.00	3.5	96.2	0.3	-0.13	1.89	0.46	0.75	—	5818	727	4	0	0	0	0	logfile
✔	8EJC	28177	2025-05-12	2022-09-16	3.0	3.01	3.00	3.1	0.006	0.64	0.0	0.04	13.37	0.00	2.199	9.48	0.00	3.6	96.4	0.0	1.20	0.69	0.84	3.08	3.1	0.003	0.63	0.0	0.04	16.03	0.00	2.558	6.73	1.55	2.6	97.4	0.0	1.47	0.39	0.69	0.85	2.03	8659	1132	6	0	1	0	0	logfile
✔	8EiT	28164	2025-05-12	2022-09-15	2.8	2.89	2.86	3.0	0.004	0.68	0.0	0.05	13.35	0.01	2.230	3.89	0.11	1.8	98.2	0.0	1.13	0.72	0.82	2.63	2.9	0.005	0.69	0.0	0.05	16.03	0.00	2.396	7.54	2.77	2.9	97.1	0.0	1.60	0.44	0.74	0.86	2.80	8578	1123	6	0	1	0	0	logfile
✔	8GVH	34293	2025-05-15	2022-09-15	3.32	3.55	3.33	3.6	0.003	0.66	0.0	0.12	15.16	0.00	2.235	6.44	0.07	5.6	94.3	0.1	-0.39	0.63	0.80	1.54	3.6	0.003	0.60	0.0	0.04	16.83	0.00	2.462	5.04	2.55	5.6	94.2	0.1	0.44	0.34	0.58	0.79	1.72	12602	1576	4	0	2	0	0	logfile
✔	8EiZ	28167	2025-05-25	2022-09-15	3.13	3.35	3.19	3.3	0.006	0.72	0.0	0.05	17.80	0.01	1.963	8.74	0.00	4.2	95.8	0.0	-0.51	0.68	0.82	3.46	3.3	0.003	0.52	0.0	0.04	15.65	0.00	2.150	4.18	1.09	3.3	96.7	0.0	0.30	1.17	0.68	0.83	3.50	26100	1575	20	0	20	10	12825	logfile
✔	8GVE	34291	2025-05-11	2022-09-15	3.17	3.38	3.18	3.4	0.003	0.62	0.0	0.04	14.33	0.01	2.113	5.93	0.00	5.7	94.3	0.0	0.31	0.64	0.80	1.68	3.4	0.003	0.58	0.0	0.04	16.15	0.00	2.549	5.32	2.05	4.9	95.1	0.0	0.92	0.28	0.64	0.81	1.17	8054	1020	2	0	0	0	0	logfile
✔	8EiK	28159	2025-05-15	2022-09-15	3.19	3.52	3.30	3.4	0.003	0.72	1.0	0.05	15.51	0.00	2.133	8.72	0.39	6.4	93.6	0.0	-1.62	0.66	0.68	1.48	3.4	0.008	0.64	0.0	0.04	16.12	0.00	2.168	6.51	2.94	5.2	94.8	0.0	-0.99	0.40	0.66	0.70	1.59	13487	1806	10	0	15	0	0	logfile
✔	8EiJ	28158	2025-05-11	2022-09-15	3.34	3.70	3.35	3.7	0.003	0.77	1.0	0.04	15.17	0.00	2.172	9.51	0.38	5.6	94.4	0.0	-1.92	0.64	0.68	1.97	3.6	0.003	0.65	0.0	0.04	16.23	0.00	2.393	7.26	2.94	5.8	94.2	0.0	-1.20	0.33	0.67	0.70	1.73	7813	1015	5	0	8	0	0	logfile
✔	8GVK	32099	2025-05-09	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.004	0.85	0.0	0.05	15.49	0.00	2.592	8.00	2.62	5.3	93.8	0.9	-0.81	0.88	0.74	0.85	6.42	3567	476	8	0	0	19	0	logfile
✔	8GVF	34292	2025-05-11	2022-09-15	3.09	3.29	3.07	3.3	0.005	0.64	0.0	0.04	14.00	0.01	2.306	4.41	0.11	3.9	95.8	0.3	0.79	0.66	0.83	2.36	3.3	0.003	0.51	0.0	0.04	15.40	0.00	2.443	3.50	1.37	3.6	96.3	0.2	1.80	0.27	0.60	0.82	1.86	8072	1022	2	0	0	0	0	logfile
✔	8EiR	28162	2025-05-10	2022-09-15	2.49	3.15	2.50	3.0	0.005	0.81	0.0	0.05	16.40	0.01	1.960	4.05	2.61	2.2	97.4	0.3	-1.27	0.86	0.84	4.26	3.0	0.004	0.60	0.0	0.04	16.34	0.00	2.606	2.49	1.12	2.6	97.4	0.0	-0.08	0.56	0.84	0.91	4.73	4870	632	4	0	0	0	0	logfile
✔	8EiH	28156	2025-05-14	2022-09-15	3.04	3.30	3.11	3.2	0.004	0.64	0.0	0.04	14.90	0.00	2.234	5.51	0.27	4.8	95.2	0.0	-1.22	0.71	0.80	3.03	3.2	0.002	0.57	0.0	0.04	15.39	0.00	2.517	3.67	1.45	3.4	96.6	0.0	-0.19	0.29	0.73	0.84	2.86	11674	1562	9	0	14	0	0	logfile
✔	8EiS	28163	2025-05-24	2022-09-15	2.62	2.94	2.68	2.9	0.007	0.71	0.0	0.05	14.60	0.01	2.085	10.61	0.00	3.9	96.1	0.0	0.79	0.70	0.83	4.03	2.9	0.004	0.61	0.0	0.04	14.09	0.00	2.404	9.49	0.59	3.2	96.8	0.0	1.32	0.42	0.66	0.81	4.08	24370	1460	10	0	25	0	12025	logfile
✔	8EHF	28146	2025-05-25	2022-09-14	3.3	3.37	3.24	3.4	0.009	0.77	6.0	0.05	15.97	0.00	2.037	7.16	3.82	6.4	93.6	0.0	-1.52	0.71	0.84	2.42	3.4	0.004	0.69	0.0	0.04	17.10	0.00	2.005	7.56	3.26	5.5	94.5	0.0	-0.17	1.34	0.73	0.86	1.91	26110	3170	10	63	4	0	0	logfile
✔	8EHS	28151	2025-05-11	2022-09-14	3.3	2.87	3.22	3.3	0.002	0.47	0.0	0.04	14.12	0.00	2.082	3.04	0.00	1.3	98.7	0.0	1.50	0.54	0.80	3.22	3.3	0.003	0.53	0.0	0.04	15.62	0.00	2.516	4.42	2.70	1.3	98.7	0.0	0.14	0.49	0.55	0.83	2.69	7546	1015	7	0	0	0	0	logfile
✔	8GV9	34288	2025-05-14	2022-09-14	3.06	3.27	3.06	3.3	0.004	0.69	0.0	0.05	16.24	0.01	2.028	6.06	0.23	5.0	94.8	0.2	-0.09	0.65	0.82	1.61	3.3	0.005	0.63	0.0	0.04	17.25	0.01	2.524	4.16	3.46	5.6	94.3	0.1	0.05	0.26	0.63	0.81	1.61	12170	1532	4	0	2	0	0	logfile
✔	8GUY	34281	2025-05-16	2022-09-14	4.18	4.57	4.26	4.3	0.005	1.02	0.0	0.06	14.55	0.01	2.249	6.07	0.12	10.0	90.0	0.0	-4.23	0.83	0.80	—	4.3	0.003	0.67	0.0	0.04	13.87	0.00	2.442	8.12	0.25	7.2	92.8	0.0	-2.19	1.64	0.83	0.79	—	14222	1762	6	0	0	0	0	logfile

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