Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EG8	28110	2025-05-25	2022-09-12	3.3	3.16	3.26	3.2	0.005	0.60	0.0	0.04	15.48	0.00	1.992	5.42	0.00	5.5	94.5	0.0	-0.29	0.71	0.82	2.30	3.2	0.003	0.57	0.0	0.04	16.92	0.00	2.009	6.50	1.69	5.4	94.6	0.0	0.13	0.35	0.72	0.85	1.73	26553	3219	10	67	5	0	0	logfile
✔	8EG7	28109	2025-05-25	2022-09-11	3.2	3.33	3.24	3.3	0.006	0.60	0.0	0.04	14.54	0.00	2.006	8.67	2.52	5.7	94.3	0.0	-0.92	0.71	0.83	2.52	3.3	0.002	0.55	0.0	0.04	16.41	0.00	1.945	7.50	2.93	4.4	95.6	0.0	-0.18	1.35	0.69	0.84	1.68	26200	3174	10	65	5	0	0	logfile
✔	8GUB	34272	2025-05-13	2022-09-11	2.73	2.94	2.80	3.0	0.008	0.62	0.0	0.04	14.43	0.00	1.994	34.45	0.17	4.8	95.2	0.0	-0.28	0.51	0.65	3.44	3.0	0.004	0.63	0.0	0.04	17.19	0.00	2.470	7.05	2.26	2.9	97.1	0.0	0.57	0.51	0.66	0.78	3.25	10358	1253	3	0	1	0	0	logfile
✔	8GUA	34271	2025-05-11	2022-09-11	2.77	2.80	2.64	2.9	0.007	0.69	0.0	0.04	15.04	0.01	2.224	10.99	0.13	3.8	95.9	0.2	-0.79	0.53	0.61	2.00	2.9	0.003	0.64	0.0	0.04	17.13	0.01	2.500	10.99	1.40	4.2	95.7	0.1	0.01	1.16	0.55	0.64	1.69	7017	855	2	0	1	0	0	logfile
✔	8GUD	34273	2025-05-10	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.85	0.01	2.116	20.31	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.004	0.67	0.0	0.04	17.50	0.00	2.433	13.47	2.24	4.5	95.5	0.0	-0.96	1.58	0.48	0.56	1.33	6814	835	2	0	1	0	0	logfile
✔	8EG0	28108	2025-05-10	2022-09-10	3.53	4.58	3.64	4.0	0.002	0.49	0.0	0.04	17.47	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.1	0.002	0.54	0.0	0.04	18.14	0.00	2.281	6.90	0.40	1.4	98.6	0.0	1.57	0.54	0.90	0.84	1.64	6031	583	4	65	1	0	0	logfile
✔	8EFY	28107	2025-05-28	2022-09-10	3.16	3.37	3.22	3.3	0.004	0.63	0.0	0.04	18.23	0.00	1.944	7.38	0.00	4.2	95.8	0.0	0.91	0.75	0.83	2.06	3.3	0.003	0.61	0.0	0.04	18.77	0.00	1.974	6.76	1.20	4.0	96.0	0.0	1.12	0.35	0.74	0.83	1.85	31274	3707	28	94	20	0	0	logfile
✔	8GU6	34270	2025-05-17	2022-09-10	3.1	3.33	3.14	3.4	0.002	0.54	0.0	0.04	18.66	0.00	2.091	13.08	0.14	5.6	94.4	0.0	-0.34	0.70	0.79	2.37	3.3	0.003	0.59	0.0	0.04	18.58	0.00	2.485	10.08	3.04	6.4	93.6	0.0	-0.33	0.29	0.70	0.79	2.36	15261	1870	5	50	4	0	0	logfile
✔	8EFV	28101	2025-05-17	2022-09-09	2.97	3.23	3.08	3.2	0.003	0.58	0.0	0.04	17.04	0.00	2.016	7.13	0.00	4.2	95.8	0.0	0.76	0.70	0.83	1.98	3.2	0.004	0.64	0.0	0.04	18.79	0.01	2.025	7.07	1.29	4.0	96.0	0.0	1.26	0.31	0.67	0.84	1.73	15295	1821	14	42	10	0	0	logfile
✔	8GTS	34266	2025-05-17	2022-09-08	3.87	4.34	4.07	4.3	0.003	0.67	0.0	0.04	14.16	0.00	2.279	10.79	0.42	2.5	97.5	0.0	0.49	0.56	0.71	1.72	4.3	0.003	0.69	0.0	0.04	15.97	0.00	2.596	7.28	2.66	3.9	96.1	0.0	1.04	0.40	0.63	0.73	1.52	15470	2016	7	0	0	0	0	logfile
✔	8EFH	28082	2025-05-22	2022-09-08	3.3	3.57	3.34	3.5	0.002	0.54	0.0	0.04	15.52	0.00	2.060	6.97	0.04	3.6	96.4	0.0	1.18	0.60	0.85	2.15	3.5	0.003	0.58	0.0	0.04	16.39	0.00	2.048	6.40	1.28	3.4	96.6	0.0	1.13	0.39	0.61	0.87	1.63	23228	2921	14	0	12	0	0	logfile
✔	8EFi	28083	2025-05-22	2022-09-08	3.4	3.88	3.42	3.5	0.003	0.57	0.0	0.04	14.29	0.00	2.065	7.54	0.04	3.0	97.0	0.0	1.40	0.62	0.87	2.08	3.6	0.004	0.65	0.0	0.04	15.59	0.00	1.936	7.32	1.08	3.7	96.3	0.0	1.42	0.38	0.63	0.90	1.85	23256	2929	13	0	10	0	0	logfile
✔	8GTo	34259	2025-05-28	2022-09-08	3.2	3.54	3.32	3.5	0.013	1.41	1.0	0.08	14.25	0.01	1.865	20.24	4.19	8.7	88.9	2.4	-3.26	0.70	0.69	1.52	3.4	0.003	0.86	1.0	0.05	15.03	0.00	2.446	6.68	2.43	5.7	94.0	0.2	-0.99	1.34	0.77	0.83	2.02	30234	3759	30	0	69	0	0	logfile
✔	8GTP	34261	2025-05-28	2022-09-08	3.1	3.47	3.25	3.4	0.013	1.47	1.0	0.08	13.84	0.01	1.912	19.57	4.36	7.8	89.5	2.7	-3.18	0.69	0.71	1.46	3.4	0.005	0.75	0.0	0.05	14.81	0.00	2.393	6.48	2.26	7.2	92.7	0.1	-0.85	1.41	0.72	0.82	2.31	30249	3768	30	0	69	0	0	logfile
✔	8GTT	34267	2025-05-17	2022-09-08	3.2	3.45	3.24	3.5	0.003	0.64	0.0	0.04	17.61	0.00	2.267	7.53	0.58	3.0	97.0	0.0	0.85	0.66	0.78	2.51	3.5	0.003	0.64	0.0	0.04	17.65	0.00	2.575	6.21	2.95	2.9	97.1	0.0	1.37	0.90	0.66	0.81	2.65	16247	2121	7	0	0	0	0	logfile
✔	8EFD	28080	2025-05-11	2022-09-08	3.8	4.67	3.83	3.9	0.002	0.49	0.0	0.04	14.10	0.00	2.048	8.46	0.13	3.8	96.2	0.0	0.81	0.88	0.79	0.38	3.9	0.002	0.67	0.0	0.04	15.96	0.00	2.550	8.74	1.17	4.1	95.9	0.0	0.64	0.56	0.88	0.79	0.54	7107	886	2	0	0	0	0	logfile
✔	8EFB	28077	2025-05-12	2022-09-08	3.2	3.04	3.02	3.2	0.005	0.91	0.0	0.06	8.31	0.01	2.247	4.66	0.00	1.8	98.2	0.0	1.18	0.61	0.75	2.06	3.2	0.003	0.59	0.0	0.04	14.40	0.00	2.523	6.80	2.55	1.7	98.3	0.0	1.10	1.32	0.67	0.84	2.78	8947	1136	6	0	1	0	0	logfile
✔	8EF6	28069	2025-05-14	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	8.21	0.01	2.267	4.03	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	3.1	0.002	0.54	0.0	0.04	12.64	0.00	2.570	6.02	1.43	1.3	98.7	0.0	2.24	1.66	0.60	0.81	2.40	11686	1439	9	0	12	0	0	logfile
✔	8EFo	28086	2025-05-14	2022-09-08	2.8	2.69	2.95	3.0	0.004	0.85	0.0	0.06	9.17	0.01	2.241	5.81	0.00	1.5	98.5	0.0	-0.93	0.59	0.76	3.19	2.9	0.003	0.63	0.0	0.04	14.46	0.00	2.423	8.95	2.62	1.5	98.5	0.0	1.54	1.32	0.62	0.83	2.84	11708	1441	9	0	12	0	0	logfile
✔	8EFP	28087	2025-05-10	2022-09-08	3.8	4.73	3.88	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.003	0.89	0.0	0.04	19.06	0.00	2.492	16.83	2.49	9.2	90.8	0.0	-2.27	0.85	0.84	0.71	-0.08	4705	594	2	0	0	0	0	logfile

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