Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GTo	34259	2025-05-28	2022-09-08	3.2	3.54	3.32	3.5	0.013	1.41	1.0	0.08	14.25	0.01	1.865	20.24	4.19	8.7	88.9	2.4	-3.26	0.70	0.69	1.52	3.4	0.003	0.86	1.0	0.05	15.03	0.00	2.446	6.68	2.43	5.7	94.0	0.2	-0.99	1.34	0.77	0.83	2.02	30234	3759	30	0	69	0	0	logfile
✔	8EFi	28083	2025-05-22	2022-09-08	3.4	3.88	3.42	3.5	0.003	0.57	0.0	0.04	14.29	0.00	2.065	7.54	0.04	3.0	97.0	0.0	1.40	0.62	0.87	2.08	3.6	0.004	0.65	0.0	0.04	15.59	0.00	1.936	7.32	1.08	3.7	96.3	0.0	1.42	0.38	0.63	0.90	1.85	23256	2929	13	0	10	0	0	logfile
✔	8EFH	28082	2025-05-22	2022-09-08	3.3	3.57	3.34	3.5	0.002	0.54	0.0	0.04	15.52	0.00	2.060	6.97	0.04	3.6	96.4	0.0	1.18	0.60	0.85	2.15	3.5	0.003	0.58	0.0	0.04	16.39	0.00	2.048	6.40	1.28	3.4	96.6	0.0	1.13	0.39	0.61	0.87	1.63	23228	2921	14	0	12	0	0	logfile
✔	8GTB	34248	2025-05-18	2022-09-08	3.43	3.83	2.02	5.0	0.007	0.71	0.0	0.04	12.85	0.00	2.213	7.43	0.00	3.1	96.9	0.0	-3.27	0.48	0.25	0.01	3.7	0.003	0.74	0.0	0.04	16.18	0.00	2.471	4.69	1.76	2.2	97.8	0.0	-0.40	3.16	0.75	0.86	1.66	17136	2340	18	0	0	0	0	logfile
✔	8EFo	28086	2025-05-14	2022-09-08	2.8	2.69	2.95	3.0	0.004	0.85	0.0	0.06	9.17	0.01	2.241	5.81	0.00	1.5	98.5	0.0	-0.93	0.59	0.76	3.19	2.9	0.003	0.63	0.0	0.04	14.46	0.00	2.423	8.95	2.62	1.5	98.5	0.0	1.54	1.32	0.62	0.83	2.84	11708	1441	9	0	12	0	0	logfile
✔	8GTS	34266	2025-05-17	2022-09-08	3.87	4.34	4.07	4.3	0.003	0.67	0.0	0.04	14.16	0.00	2.279	10.79	0.42	2.5	97.5	0.0	0.49	0.56	0.71	1.72	4.3	0.003	0.69	0.0	0.04	15.97	0.00	2.596	7.28	2.66	3.9	96.1	0.0	1.04	0.40	0.63	0.73	1.52	15470	2016	7	0	0	0	0	logfile
✔	8EFE	28081	2025-05-11	2022-09-08	3.8	4.45	3.81	3.8	0.002	0.52	0.0	0.04	14.48	0.00	1.948	8.30	0.52	3.8	96.2	0.0	1.15	0.93	0.82	1.08	3.8	0.004	0.62	0.0	0.04	16.17	0.00	1.922	9.07	1.17	4.5	95.5	0.0	0.69	0.46	0.93	0.84	1.07	7135	886	3	0	2	0	0	logfile
✔	8EF5	28066	2025-05-14	2022-09-08	3.3	2.72	3.18	3.3	0.004	0.88	0.0	0.07	8.23	0.01	2.284	4.02	0.00	1.3	98.7	0.0	0.02	0.73	0.76	2.15	3.4	0.003	0.66	0.0	0.04	14.52	0.00	2.461	9.36	3.41	1.7	98.3	0.0	1.52	0.83	0.76	0.80	1.91	11705	1441	9	0	12	0	0	logfile
✔	8B0M	15788	2025-05-11	2022-09-07	3.01	3.39	3.02	3.3	0.003	0.66	0.0	0.04	11.18	0.00	2.258	5.92	0.48	5.7	94.3	0.0	-0.18	0.57	0.84	5.07	3.3	0.003	0.59	0.0	0.04	13.83	0.00	2.558	6.29	2.64	6.1	93.9	0.0	0.68	1.69	0.58	0.86	3.43	4015	508	2	0	1	0	0	logfile
✔	8B0i	15784	2025-05-19	2022-09-07	4.28	5.23	4.33	4.5	0.012	1.98	1.0	0.11	24.77	0.01	1.911	8.92	0.14	5.1	94.9	0.0	-1.62	0.77	0.61	—	4.5	0.003	0.64	0.0	0.04	22.91	0.00	2.264	11.57	0.00	5.6	94.4	0.0	-0.05	1.39	0.80	0.74	—	17636	1075	5	103	0	0	7831	logfile
✔	8GT6	34245	2025-05-10	2022-09-07	3.47	3.69	3.51	3.6	0.011	1.13	0.0	0.06	16.02	0.01	2.322	9.92	0.77	5.1	94.9	0.0	-4.60	0.63	0.82	2.34	3.6	0.003	0.82	0.0	0.04	16.86	0.00	2.609	8.49	2.70	4.4	95.6	0.0	0.02	0.63	0.63	0.83	2.13	4922	618	3	0	1	0	0	logfile
✔	8B0J	15785	2025-05-26	2022-09-07	3.99	4.45	4.03	4.1	0.009	1.30	0.0	0.08	22.58	0.01	1.945	11.42	0.00	9.7	90.3	0.0	-2.43	0.73	0.68	1.71	4.1	0.014	0.81	0.0	0.04	22.33	0.01	2.218	17.28	3.57	7.0	93.0	0.0	-0.92	1.42	0.76	0.75	2.01	28636	1931	7	160	0	0	12434	logfile
✔	8EEV	28060	2025-05-20	2022-09-07	3.6	2.41	3.44	2.0	0.009	0.95	0.0	0.05	9.16	0.01	1.996	4.75	0.00	11.6	88.1	0.3	-4.66	0.70	0.73	3.35	2.1	0.005	0.83	0.0	0.05	14.63	0.01	2.281	11.24	4.60	8.2	91.7	0.1	-2.16	0.62	0.72	0.75	3.10	20640	2713	12	0	0	0	0	logfile
✔	8EEX	28064	2025-05-18	2022-09-07	2.95	2.88	2.94	3.0	0.006	0.90	0.0	0.05	17.00	0.01	2.173	0.66	0.51	1.8	98.2	0.0	-0.43	0.69	0.83	3.81	3.0	0.004	0.64	0.0	0.04	18.43	0.00	2.480	4.02	2.17	3.4	96.6	0.0	0.60	1.50	0.71	0.87	3.26	17082	2008	4	36	4	0	0	logfile
✔	8EEY	28065	2025-05-21	2022-09-07	2.53	2.25	2.57	2.5	0.006	0.88	0.0	0.05	16.42	0.01	1.937	0.37	0.14	1.8	98.1	0.0	0.01	0.60	0.80	4.57	2.5	0.007	0.76	0.0	0.05	18.34	0.01	2.521	3.31	2.19	2.5	97.5	0.0	0.70	1.17	0.64	0.87	4.01	20886	2393	6	66	4	0	0	logfile
✔	8B0A	15777	2025-05-17	2022-09-07	3.0	4.03	3.06	3.3	0.008	0.96	0.0	0.07	23.86	0.01	2.331	0.99	0.58	2.7	96.9	0.4	-0.03	0.91	0.88	3.22	3.3	0.004	0.69	0.0	0.04	25.63	0.00	2.419	6.69	1.25	2.1	97.8	0.2	2.04	1.38	0.92	0.90	1.73	15843	1222	11	298	0	0	0	logfile
✔	8B0L	15787	2025-05-11	2022-09-07	3.13	3.53	3.20	3.4	0.003	0.67	0.0	0.04	10.82	0.00	2.270	7.86	0.48	4.5	95.5	0.0	1.39	0.56	0.84	4.51	3.4	0.003	0.58	0.0	0.04	13.90	0.00	2.465	7.37	1.92	4.1	95.9	0.0	1.18	0.93	0.55	0.84	3.60	4033	510	2	0	1	0	0	logfile
✔	8EEU	28058	2025-05-19	2022-09-07	3.5	2.35	3.41	2.2	0.012	0.94	0.0	0.05	9.27	0.01	1.997	4.04	0.05	10.9	88.9	0.2	-4.71	0.69	0.74	3.72	2.2	0.004	0.73	0.0	0.04	15.05	0.00	2.490	8.62	3.86	6.9	93.1	0.0	-1.77	1.24	0.71	0.76	3.18	19127	2471	8	0	0	0	0	logfile
✔	8B0N	15789	2025-05-11	2022-09-07	2.67	2.99	2.76	3.0	0.004	0.57	0.0	0.04	10.45	0.00	2.267	5.50	0.00	3.4	96.6	0.0	0.75	0.57	0.86	5.58	3.0	0.003	0.55	0.0	0.04	13.17	0.00	2.582	3.87	0.74	3.6	96.4	0.0	1.09	0.87	0.56	0.87	4.48	4004	510	2	0	1	0	0	logfile
✔	8B0K	15786	2025-05-10	2022-09-07	3.0	3.23	3.08	3.2	0.002	0.52	0.0	0.04	9.63	0.00	2.276	7.40	0.50	3.1	96.9	0.0	0.56	0.57	0.83	5.07	3.2	0.002	0.58	0.0	0.04	13.09	0.00	2.587	5.97	3.02	3.7	96.3	0.0	0.96	0.27	0.59	0.85	4.34	3830	492	1	0	0	0	0	logfile

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