Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B0J	15785	2025-05-26	2022-09-07	3.99	4.45	4.03	4.1	0.009	1.30	0.0	0.08	22.58	0.01	1.945	11.42	0.00	9.7	90.3	0.0	-2.43	0.73	0.68	1.71	4.1	0.014	0.81	0.0	0.04	22.33	0.01	2.218	17.28	3.57	7.0	93.0	0.0	-0.92	1.42	0.76	0.75	2.01	28636	1931	7	160	0	0	12434	logfile
✔	8GSZ	34244	2025-05-10	2022-09-07	3.65	3.14	3.67	3.8	0.006	0.86	0.0	0.05	15.61	0.01	2.241	12.76	0.39	2.7	97.3	0.0	-5.38	0.62	0.76	1.72	3.8	0.002	0.71	0.0	0.04	17.81	0.00	2.354	9.26	3.10	2.3	97.7	0.0	-0.99	0.75	0.62	0.76	0.90	4870	620	2	0	0	0	0	logfile
✔	8B01	15775	2025-05-10	2022-09-06	3.03	3.65	3.02	3.5	0.004	0.60	0.0	0.04	13.53	0.00	2.217	2.82	0.53	2.9	97.1	0.0	2.16	0.67	0.82	2.94	3.5	0.003	0.54	0.0	0.04	15.16	0.00	2.327	2.29	2.28	2.2	97.8	0.0	2.59	0.99	0.71	0.87	2.78	5478	684	5	0	15	0	0	logfile
✔	8GSo	34237	2025-05-13	2022-09-06	3.3	3.69	3.38	3.7	0.013	1.66	18.0	0.11	25.12	0.01	1.194	20.44	41.49	17.0	76.3	6.7	-5.21	0.57	0.72	1.47	3.7	0.005	0.87	0.0	0.05	18.13	0.01	2.400	12.88	4.51	12.6	87.0	0.4	-0.45	1.07	0.58	0.86	1.62	10624	1322	2	0	0	0	0	logfile
✔	8EDX	28042	2025-05-17	2022-09-06	2.81	2.99	2.70	2.9	0.006	0.60	0.0	0.05	15.44	0.00	2.378	5.42	0.71	4.7	95.3	0.0	-2.86	0.78	0.92	5.20	2.9	0.006	0.60	0.0	0.05	16.16	0.00	2.416	4.79	2.72	2.2	97.8	0.0	-0.93	0.34	0.79	0.92	5.06	16074	2088	6	0	0	0	0	logfile
✔	8EEA	28049	2025-05-23	2022-09-06	2.6	2.80	—	2.9	0.003	0.52	0.0	0.04	15.18	0.00	1.983	1.97	0.00	3.7	96.3	0.0	0.61	0.64	0.79	3.14	2.8	0.003	0.54	0.0	0.04	17.54	0.00	2.518	2.46	1.21	3.3	96.7	0.0	0.83	0.35	0.68	0.83	2.83	24480	3017	12	0	4	0	0	logfile
✔	8EEB	28050	2025-05-17	2022-09-06	3.9	4.36	3.87	4.0	0.003	0.70	0.0	0.05	15.26	0.00	2.221	9.09	0.00	3.4	96.6	0.0	0.48	0.73	0.80	1.42	4.0	0.002	0.69	0.0	0.04	15.39	0.00	2.522	8.21	0.85	3.3	96.7	0.0	0.89	0.95	0.73	0.80	1.55	14672	1873	7	0	16	0	0	logfile
✔	8GSE	34233	2025-05-11	2022-09-06	3.7	3.78	3.73	3.8	0.005	0.68	0.0	0.05	13.93	0.01	2.246	5.81	0.00	5.9	94.1	0.0	-1.94	0.43	0.85	2.71	3.8	0.002	0.54	0.0	0.04	15.94	0.00	2.558	3.96	0.97	3.5	96.5	0.0	-1.56	1.40	0.42	0.83	2.62	7474	952	5	0	0	0	0	logfile
✔	8EE7	28048	2025-05-19	2022-09-06	2.72	2.91	2.76	2.9	0.003	0.52	1.0	0.04	14.76	0.00	1.968	1.75	0.00	3.9	96.1	0.0	0.68	0.61	0.81	3.18	2.9	0.003	0.52	2.0	0.04	16.58	0.00	2.442	0.93	0.91	3.7	96.3	0.0	0.99	0.29	0.61	0.81	3.17	18094	1135	4	0	1	0	8906	logfile
✔	8AZS	15770	2025-05-12	2022-09-06	2.9	2.78	2.55	2.8	0.018	1.76	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	2.4	0.077	8.21	346.0	0.36	33.60	0.06	1.178	611.74	23.44	37.4	26.8	35.8	-9.00	17.91	0.17	0.14	0.26	9036	1224	36	0	0	0	0	logfile
✔	8GS6	34221	2025-05-23	2022-09-05	2.86	3.44	2.87	3.3	0.004	0.71	0.0	0.05	14.84	0.00	2.140	6.25	0.00	4.4	95.6	0.0	-0.45	0.83	0.84	2.81	3.3	0.004	0.67	0.0	0.05	15.64	0.00	2.418	3.73	1.05	4.8	95.2	0.0	-0.20	0.33	0.84	0.85	2.79	24538	3058	11	0	41	0	0	logfile
✔	8GS9	34226	2025-05-09	2022-09-05	2.66	2.88	2.78	2.9	0.003	0.55	0.0	0.04	11.98	0.00	2.297	3.11	0.60	5.6	93.8	0.5	-0.51	0.61	0.71	2.97	2.9	0.003	0.71	0.0	0.04	15.78	0.00	2.537	6.06	3.58	3.6	96.4	0.0	-0.50	0.79	0.63	0.74	2.88	3116	396	3	0	0	0	0	logfile
✔	8AZ5	15754	2025-05-09	2022-09-05	2.3	2.46	2.29	2.4	0.009	0.66	0.0	0.06	11.45	0.00	2.485	10.18	0.00	1.6	98.4	0.0	-2.90	0.56	0.89	6.92	2.4	0.060	0.67	0.0	0.05	12.41	0.00	2.128	3.56	0.00	3.8	96.2	0.0	-2.99	0.52	0.58	0.91	7.30	4060	540	53	0	20	20	0	logfile
✔	8AZ6	15755	2025-05-09	2022-09-05	3.1	3.15	3.07	3.1	0.009	0.43	0.0	0.04	9.46	0.00	2.212	5.45	0.00	4.8	95.2	0.0	-4.04	0.50	0.84	6.14	3.1	0.069	0.59	0.0	0.04	13.77	0.00	2.205	2.12	4.74	5.0	95.0	0.0	-4.88	0.73	0.51	0.87	6.50	3420	460	40	0	20	0	0	logfile
✔	8AZA	15757	2025-05-10	2022-09-05	3.15	4.29	3.14	3.5	0.004	0.76	1.0	0.05	17.83	0.01	2.202	26.58	0.73	4.9	95.1	0.0	-0.75	0.83	0.67	0.65	3.5	0.003	0.80	0.0	0.05	18.17	0.01	2.482	19.23	3.67	5.1	94.9	0.0	-0.58	0.68	0.84	0.71	0.68	4970	606	4	0	1	0	0	logfile
✔	8AZ4	15753	2025-05-09	2022-09-05	2.2	2.27	2.09	2.2	0.009	0.72	0.0	0.05	10.22	0.00	2.292	1.89	0.00	7.7	92.3	0.0	-3.94	0.57	0.88	8.31	2.2	0.003	0.63	0.0	0.05	13.02	0.00	2.695	2.12	2.08	7.7	92.3	0.0	-3.94	0.47	0.59	0.90	7.19	2280	280	30	0	10	100	0	logfile
✔	8AZ2	15730	2025-05-09	2022-09-05	3.4	3.30	3.43	3.6	0.008	0.45	0.0	0.04	9.02	0.00	2.412	5.63	0.00	0.0	100.0	0.0	-2.98	0.52	0.85	6.33	3.6	0.056	0.61	0.0	0.05	11.25	0.00	2.368	1.41	1.25	2.2	97.8	0.0	-2.89	0.45	0.49	0.86	6.03	2935	395	30	0	15	0	0	logfile
✔	8AZ0	15728	2025-05-09	2022-09-05	3.4	3.10	3.36	3.6	0.009	0.74	0.0	0.05	8.05	0.01	2.611	0.94	0.00	7.7	92.3	0.0	-4.46	0.50	0.87	5.60	3.6	0.051	0.52	0.0	0.04	11.28	0.00	2.292	0.24	2.08	6.2	93.8	0.0	-4.90	0.45	0.45	0.85	4.64	2180	280	20	0	10	0	0	logfile
✔	8EDN	28037	2025-05-09	2022-09-05	3.8	3.47	3.75	3.3	0.002	0.58	0.0	0.04	11.31	0.00	2.205	6.81	0.46	5.7	94.1	0.2	2.77	0.65	0.60	0.13	3.3	0.003	0.61	0.0	0.04	13.87	0.00	2.498	8.05	3.23	4.1	95.7	0.2	2.56	1.14	0.70	0.72	1.67	3683	579	1	0	0	0	0	logfile
✔	8AZ3	15731	2025-05-09	2022-09-05	3.4	2.64	3.41	3.6	0.009	0.66	0.0	0.06	9.60	0.00	2.509	6.87	0.00	0.0	100.0	0.0	-2.88	0.47	0.83	5.76	3.6	0.050	0.64	0.0	0.05	12.19	0.00	1.822	5.34	0.91	4.8	95.2	0.0	-4.49	0.62	0.49	0.86	6.29	4040	540	40	0	20	0	0	logfile

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