Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GS9	34226	2025-05-09	2022-09-05	2.66	2.88	2.78	2.9	0.003	0.55	0.0	0.04	11.98	0.00	2.297	3.11	0.60	5.6	93.8	0.5	-0.51	0.61	0.71	2.97	2.9	0.003	0.71	0.0	0.04	15.78	0.00	2.537	6.06	3.58	3.6	96.4	0.0	-0.50	0.79	0.63	0.74	2.88	3116	396	3	0	0	0	0	logfile
✔	8AZ6	15755	2025-05-09	2022-09-05	3.1	3.15	3.07	3.1	0.009	0.43	0.0	0.04	9.46	0.00	2.212	5.45	0.00	4.8	95.2	0.0	-4.04	0.50	0.84	6.14	3.1	0.069	0.59	0.0	0.04	13.77	0.00	2.205	2.12	4.74	5.0	95.0	0.0	-4.88	0.73	0.51	0.87	6.50	3420	460	40	0	20	0	0	logfile
✔	8GS8	34225	2025-05-12	2022-09-05	2.86	3.07	2.84	3.1	0.033	1.75	0.0	0.52	14.96	0.01	2.168	12.06	0.67	7.9	92.1	0.1	-4.22	0.62	0.84	3.93	3.1	0.003	1.41	0.0	0.06	16.00	0.00	1.806	7.46	0.56	2.6	97.4	0.0	1.03	0.83	0.61	0.85	3.65	8637	1090	8	0	7	0	0	logfile
✔	8AZ5	15754	2025-05-09	2022-09-05	2.3	2.46	2.29	2.4	0.009	0.66	0.0	0.06	11.45	0.00	2.485	10.18	0.00	1.6	98.4	0.0	-2.90	0.56	0.89	6.92	2.4	0.060	0.67	0.0	0.05	12.41	0.00	2.128	3.56	0.00	3.8	96.2	0.0	-2.99	0.52	0.58	0.91	7.30	4060	540	53	0	20	20	0	logfile
✔	8EDo	28038	2025-05-10	2022-09-05	3.4	3.18	3.37	3.1	0.004	0.61	0.0	0.04	11.35	0.00	2.288	6.16	0.00	4.3	95.5	0.1	2.05	0.68	0.76	2.87	3.1	0.003	0.55	0.0	0.04	13.24	0.00	2.538	4.82	3.45	4.6	95.4	0.0	2.97	0.33	0.68	0.78	1.93	4465	751	2	0	0	0	0	logfile
✔	8AZ7	15756	2025-05-09	2022-09-05	2.9	3.01	2.81	2.9	0.008	0.51	0.0	0.04	8.79	0.00	2.665	3.88	0.00	4.0	96.0	0.0	-3.51	0.53	0.83	4.58	2.9	0.050	0.79	0.0	0.05	12.16	0.00	2.258	3.49	1.36	8.0	92.0	0.0	-3.83	0.64	0.52	0.88	4.96	4010	540	40	0	20	0	0	logfile
✔	8EDL	28035	2025-05-09	2022-09-05	3.7	3.30	3.61	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.1	0.003	0.59	0.0	0.03	13.42	0.00	2.535	6.09	2.31	2.6	97.4	0.0	3.40	1.12	0.68	0.73	2.60	2470	395	1	0	0	0	0	logfile
✔	8GS3	34219	2025-05-17	2022-09-04	3.9	3.16	3.68	3.0	0.014	1.36	0.0	0.05	15.90	0.01	1.810	20.53	0.00	3.5	96.5	0.0	0.27	0.83	0.75	1.57	3.0	0.014	1.36	0.0	0.05	15.94	0.01	1.812	21.50	0.11	3.5	96.5	0.0	0.27	0.05	0.83	0.76	1.57	8376	1067	2	0	0	0	0	logfile
✔	8GS2	34218	2025-05-18	2022-09-04	2.84	3.09	2.93	3.1	0.002	0.42	0.0	0.04	12.54	0.00	1.579	4.49	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.002	0.52	0.0	0.04	16.36	0.00	2.473	4.97	1.62	1.5	98.5	0.0	1.24	1.31	0.72	0.90	4.24	16935	1916	8	64	4	0	0	logfile
✔	8GS4	34220	2025-05-11	2022-09-04	3.5	3.66	3.50	3.7	0.004	0.84	0.0	0.05	13.58	0.01	2.251	11.71	0.00	13.3	86.7	0.0	-4.70	0.69	0.75	2.42	3.7	0.003	0.74	0.0	0.04	15.65	0.01	2.574	8.07	3.33	11.2	88.8	0.0	-3.21	1.01	0.67	0.75	1.63	8250	1050	2	0	0	0	0	logfile
✔	8ED7	28031	2025-05-29	2022-09-03	3.7	3.72	3.75	3.6	0.004	0.54	0.0	0.04	12.28	0.00	2.230	4.36	2.92	4.4	95.6	0.0	0.57	0.87	0.82	1.43	3.6	0.003	0.64	0.0	0.04	14.55	0.00	2.394	5.61	2.15	3.6	96.4	0.0	1.70	0.45	0.87	0.83	1.11	31518	3826	11	0	72	0	0	logfile
✔	8GRY	34217	2025-05-12	2022-09-03	3.29	2.52	3.34	2.2	0.004	0.58	0.0	0.04	16.15	0.00	2.001	6.11	0.14	4.7	95.3	0.0	0.44	0.75	0.76	2.64	2.1	0.004	0.66	0.0	0.04	17.61	0.00	1.953	5.64	1.87	3.6	96.4	0.0	0.69	1.38	0.78	0.81	2.67	6444	792	4	0	2	0	0	logfile
✔	8AYH	15713	2025-05-20	2022-09-02	3.35	3.45	3.40	3.4	0.007	0.91	0.0	0.06	14.46	0.01	2.114	5.00	0.65	6.5	93.4	0.1	-4.12	0.83	0.85	2.90	3.4	0.003	0.62	0.0	0.05	15.95	0.00	2.106	7.07	2.38	4.7	95.3	0.0	-1.09	0.52	0.83	0.87	2.78	19109	2414	5	0	2	0	0	logfile
✔	8GRM	34207	2025-05-22	2022-09-02	3.05	3.23	3.05	3.1	0.013	0.95	0.0	0.06	23.20	0.01	2.289	4.52	0.29	4.4	95.6	0.0	-5.38	0.81	0.81	1.71	3.1	0.004	0.62	0.0	0.04	25.56	0.00	2.131	7.82	1.96	3.0	97.0	0.0	0.48	0.82	0.80	0.87	1.80	15415	1195	16	289	4	0	0	logfile
✔	8GRQ	34212	2025-05-17	2022-09-02	3.87	4.28	3.83	3.8	0.004	0.69	0.0	0.04	25.40	0.00	2.125	14.63	0.22	3.2	96.8	0.0	0.64	0.87	0.82	0.93	3.7	0.004	0.86	0.0	0.04	27.05	0.01	2.122	15.99	2.52	4.5	95.4	0.1	0.22	0.69	0.87	0.83	0.66	14563	1084	15	294	4	0	0	logfile
✔	8AYN	15717	2025-05-18	2022-09-02	2.8	2.38	2.63	2.8	0.012	1.21	0.0	0.05	16.28	0.00	2.003	5.50	0.00	3.9	96.1	0.0	0.76	0.68	0.80	3.90	2.8	0.004	0.59	0.0	0.04	16.54	0.00	2.526	5.91	1.71	2.1	97.9	0.0	1.02	1.17	0.64	0.81	3.38	15748	1998	12	0	28	0	0	logfile
✔	8GRo	34210	2025-05-13	2022-09-02	3.5	3.98	3.66	3.9	0.013	1.67	17.0	0.11	25.25	0.01	1.194	18.95	41.49	16.3	77.1	6.6	-5.21	0.60	0.74	1.94	3.9	0.004	0.87	0.0	0.04	18.71	0.01	2.475	13.81	4.77	11.4	88.3	0.3	-0.57	1.30	0.57	0.81	1.64	10624	1322	2	0	0	0	0	logfile
✔	8GRN	34209	2025-05-14	2022-09-02	2.5	3.22	2.90	3.2	0.033	3.22	177.0	0.26	23.95	0.02	1.842	20.38	36.57	14.8	77.8	7.4	-5.62	0.54	0.70	2.38	3.2	0.007	0.97	0.0	0.05	19.13	0.01	2.290	7.90	3.80	10.0	89.8	0.2	-0.62	1.21	0.46	0.74	2.32	11602	1432	4	0	2	0	0	logfile
✔	8ED0	28026	2025-05-17	2022-09-02	2.72	2.93	2.51	2.9	0.007	0.75	1.0	0.05	14.42	0.01	2.201	6.70	0.18	3.9	95.5	0.6	-2.14	0.75	0.91	5.72	2.9	0.004	0.56	0.0	0.04	15.41	0.00	2.476	4.89	2.42	3.5	96.5	0.0	-0.53	0.94	0.77	0.92	5.10	16074	2088	6	0	0	0	0	logfile
✔	8GRX	34216	2025-05-11	2022-09-02	3.0	3.20	2.96	3.2	0.007	1.26	0.0	0.05	12.30	0.00	2.373	6.41	0.22	3.3	96.2	0.6	-0.43	0.72	0.81	3.45	3.2	0.003	0.56	0.0	0.04	15.37	0.01	2.488	5.38	2.13	2.5	97.5	0.0	2.02	0.58	0.75	0.84	3.45	8328	1056	4	0	0	0	0	logfile

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