Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GRM	34207	2025-05-22	2022-09-02	3.05	3.23	3.05	3.1	0.013	0.95	0.0	0.06	23.20	0.01	2.289	4.52	0.29	4.4	95.6	0.0	-5.38	0.81	0.81	1.71	3.1	0.004	0.62	0.0	0.04	25.56	0.00	2.131	7.82	1.96	3.0	97.0	0.0	0.48	0.82	0.80	0.87	1.80	15415	1195	16	289	4	0	0	logfile
✔	8AYH	15713	2025-05-20	2022-09-02	3.35	3.45	3.40	3.4	0.007	0.91	0.0	0.06	14.46	0.01	2.114	5.00	0.65	6.5	93.4	0.1	-4.12	0.83	0.85	2.90	3.4	0.003	0.62	0.0	0.05	15.95	0.00	2.106	7.07	2.38	4.7	95.3	0.0	-1.09	0.52	0.83	0.87	2.78	19109	2414	5	0	2	0	0	logfile
✔	8EC6	28013	2025-05-19	2022-09-01	3.1	3.45	3.03	3.4	0.004	0.49	0.0	0.04	12.90	0.00	2.049	6.80	0.05	5.7	94.2	0.1	1.23	0.69	0.82	3.48	3.4	0.003	0.51	0.0	0.04	14.02	0.00	2.522	4.42	2.04	5.9	94.0	0.1	1.59	2.21	0.77	0.86	3.25	19133	2479	16	0	8	0	0	logfile
✔	8AXA	15697	2025-05-12	2022-08-31	2.96	3.56	2.99	3.1	0.003	0.57	0.0	0.03	23.95	0.01	2.143	11.47	0.49	6.3	93.7	0.0	0.01	0.82	0.76	2.74	3.1	0.005	0.97	1.0	0.04	23.67	0.01	2.025	11.60	4.13	7.4	92.6	0.0	-0.02	0.36	0.84	0.79	2.54	9142	465	6	253	0	3	0	logfile
✔	8GQY	34203	2025-05-12	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.003	0.95	1.0	0.04	15.10	0.00	2.456	5.74	3.18	1.8	98.2	0.0	-0.59	1.39	0.65	0.86	2.05	9515	1265	5	0	0	0	0	logfile
✔	8EBU	27998	2025-05-22	2022-08-31	3.3	2.53	3.30	2.0	0.002	0.51	0.0	0.04	13.04	0.00	2.188	7.98	3.02	4.0	96.0	0.0	0.84	0.76	0.72	1.90	2.1	0.004	0.77	0.0	0.04	17.67	0.00	2.411	11.70	3.54	4.9	95.1	0.0	0.06	1.49	0.76	0.77	1.58	23543	2808	15	47	7	0	0	logfile
✔	8EBY	28002	2025-05-23	2022-08-31	3.6	2.60	3.53	2.1	0.002	0.49	0.0	0.04	11.97	0.00	2.142	8.09	2.23	4.3	95.6	0.0	0.93	0.71	0.72	1.81	2.1	0.003	0.77	0.0	0.04	17.14	0.00	2.434	11.14	3.71	5.1	94.9	0.0	0.08	0.85	0.74	0.73	1.37	23709	2834	15	45	7	0	0	logfile
✔	8EBP	27995	2025-05-15	2022-08-31	3.38	3.98	3.43	3.7	0.004	0.63	0.0	0.05	12.80	0.00	2.126	7.78	0.00	7.1	92.9	0.1	-1.69	0.88	0.85	2.19	3.7	0.004	0.64	0.0	0.04	14.45	0.00	2.392	6.83	0.81	6.1	93.8	0.1	-0.93	0.37	0.88	0.87	1.78	13230	1752	6	0	0	0	0	logfile
✔	8AXB	15698	2025-05-11	2022-08-31	2.87	3.44	2.87	3.1	0.004	0.62	0.0	0.03	23.87	0.01	2.036	18.05	0.53	5.9	94.1	0.0	-0.94	0.79	0.71	1.53	3.1	0.004	0.66	0.0	0.03	23.59	0.00	2.032	15.75	2.91	3.3	96.7	0.0	-0.18	0.55	0.80	0.74	1.07	8383	430	3	230	0	2	0	logfile
✔	8GQD	34200	2025-05-15	2022-08-30	3.41	3.57	3.38	3.6	0.014	1.13	1.0	0.06	18.05	0.01	2.168	3.84	5.20	12.9	87.1	0.0	-4.94	0.64	0.62	0.89	3.6	0.005	0.95	0.0	0.04	18.50	0.00	2.460	8.12	2.88	8.8	91.2	0.0	-1.55	0.81	0.68	0.67	0.44	12644	1576	12	0	4	0	0	logfile
✔	8AWT	15696	2025-05-09	2022-08-30	3.0	3.11	2.91	3.1	0.008	0.47	0.0	0.04	9.30	0.00	2.671	4.07	0.00	0.0	100.0	0.0	-4.11	0.52	0.86	6.78	3.1	0.059	0.50	0.0	0.04	10.36	0.00	2.302	0.00	0.00	0.4	99.6	0.0	-4.02	1.02	0.53	0.89	7.01	1910	260	20	0	10	0	0	logfile
✔	8EAY	27990	2025-05-12	2022-08-30	3.33	3.56	3.20	3.6	0.008	1.33	4.0	0.09	14.18	0.01	2.243	5.38	0.76	9.5	90.1	0.3	-2.33	0.58	0.63	1.83	3.6	0.003	0.64	0.0	0.04	15.66	0.00	2.265	6.43	1.89	11.2	88.7	0.2	-2.23	1.22	0.63	0.71	2.17	9479	626	3	0	0	0	4718	logfile
✔	8AW5	15691	2025-05-11	2022-08-29	2.8	2.88	2.63	2.9	0.018	1.76	3.0	0.07	18.38	0.04	2.427	8.09	0.43	4.6	95.0	0.4	0.42	0.70	0.85	3.73	2.9	0.004	0.62	0.0	0.04	17.90	0.00	2.506	7.54	2.02	2.9	96.7	0.4	2.91	1.39	0.70	0.88	3.77	7023	798	6	0	12	0	0	logfile
✔	8GQ6	34199	2025-05-22	2022-08-29	3.96	3.05	3.97	3.1	0.002	0.54	0.0	0.04	13.63	0.00	2.109	11.15	0.32	6.9	93.0	0.1	-0.79	0.66	0.63	0.59	3.1	0.003	0.85	0.0	0.05	17.30	0.00	1.771	16.04	3.52	9.2	90.8	0.1	-1.23	1.58	0.67	0.66	0.55	22293	2742	8	0	6	0	0	logfile
✔	8AW3	15690	2025-05-10	2022-08-29	3.6	4.37	3.67	3.7	0.008	1.10	3.0	0.08	20.77	0.01	1.874	11.98	2.12	5.9	94.1	0.0	-1.95	0.79	0.65	2.69	3.7	0.002	0.61	0.0	0.03	20.70	0.00	1.952	8.56	2.38	2.7	97.3	0.0	-0.72	1.13	0.86	0.80	1.75	5059	456	5	73	2	0	0	logfile
✔	8EAU	27986	2025-05-21	2022-08-29	3.1	3.32	3.11	3.3	0.004	0.64	0.0	0.04	12.72	0.00	2.097	9.07	0.00	1.7	98.3	0.0	1.07	0.67	0.82	3.62	3.3	0.004	0.57	0.0	0.04	14.93	0.00	2.494	7.98	2.19	1.8	98.2	0.0	1.60	1.52	0.69	0.85	2.89	21909	2946	16	0	0	0	0	logfile
✔	8EAS	27984	2025-05-23	2022-08-29	2.6	2.77	2.60	2.8	0.006	0.64	0.0	0.04	12.91	0.00	2.044	9.00	0.00	1.4	98.6	0.0	1.65	0.67	0.83	4.09	2.8	0.004	0.54	0.0	0.04	15.43	0.00	2.399	7.74	1.81	1.3	98.7	0.0	1.99	0.28	0.66	0.84	3.38	24802	3241	19	0	39	0	0	logfile
✔	8EAX	27989	2025-05-19	2022-08-29	3.73	2.60	3.73	2.0	0.004	0.83	0.0	0.05	14.96	0.00	2.213	11.91	0.30	9.8	89.8	0.4	-3.99	0.73	0.74	1.75	2.0	0.003	0.83	0.0	0.04	17.53	0.00	2.424	8.90	1.88	4.7	95.3	0.0	-0.19	1.33	0.73	0.72	1.21	18458	2332	8	0	0	0	0	logfile
✔	8E9X	27967	2025-05-11	2022-08-27	2.7	2.10	2.72	1.9	0.005	0.55	0.0	0.04	12.41	0.00	2.200	6.28	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.003	0.55	0.0	0.04	14.99	0.00	2.591	5.85	2.41	3.5	96.5	0.0	0.79	0.34	0.80	0.82	3.67	8380	1109	6	0	1	0	0	logfile
✔	8EA0	27970	2025-05-09	2022-08-27	2.56	2.05	2.65	1.9	0.003	0.55	0.0	0.04	13.66	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.58	0.0	0.04	14.86	0.00	2.368	9.32	1.26	5.3	94.7	0.0	0.99	0.36	0.74	0.81	2.99	2286	285	2	0	2	0	0	logfile

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