Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EA0	27970	2025-05-09	2022-08-27	2.56	2.05	2.65	1.9	0.003	0.55	0.0	0.04	13.66	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.58	0.0	0.04	14.86	0.00	2.368	9.32	1.26	5.3	94.7	0.0	0.99	0.36	0.74	0.81	2.99	2286	285	2	0	2	0	0	logfile
✔	8AVV	15684	2025-05-11	2022-08-27	3.4	3.53	3.39	3.5	0.008	1.38	0.0	0.08	18.23	0.01	2.580	1.80	5.03	4.7	95.1	0.2	-3.08	0.76	0.87	2.54	3.5	0.004	0.65	0.0	0.04	17.92	0.00	2.586	4.58	2.89	2.1	97.9	0.0	0.11	0.62	0.75	0.86	2.21	7794	1010	4	0	2	0	0	logfile
✔	8E9W	27966	2025-05-11	2022-08-27	2.69	2.11	2.70	1.9	0.005	0.63	0.0	0.04	12.69	0.00	2.210	7.31	0.11	2.9	97.1	0.0	0.23	0.78	0.78	3.54	1.9	0.003	0.60	0.0	0.04	15.49	0.00	2.519	5.81	2.62	3.1	96.9	0.0	0.82	0.36	0.80	0.82	3.03	8529	1123	6	0	1	0	0	logfile
✔	8E9Z	27969	2025-05-12	2022-08-27	2.69	2.09	2.63	1.9	0.004	0.80	2.0	0.05	15.37	0.01	2.248	9.60	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.003	0.58	0.0	0.04	15.80	0.00	2.421	6.50	2.06	3.0	97.0	0.0	0.48	0.30	0.79	0.80	2.86	8566	1129	6	0	2	0	0	logfile
✔	8AVX	15686	2025-05-11	2022-08-27	3.5	3.71	3.50	3.7	0.008	1.38	0.0	0.08	17.71	0.01	2.316	1.69	4.23	4.5	95.2	0.2	-4.05	0.69	0.67	0.44	3.6	0.003	0.73	0.0	0.04	17.67	0.00	2.465	7.57	2.78	2.6	97.4	0.0	-0.69	1.20	0.70	0.67	0.93	7427	961	4	0	2	0	0	logfile
✔	8AVG	15682	2025-05-16	2022-08-26	4.01	3.61	3.86	3.5	0.003	0.70	0.0	0.05	15.12	0.00	2.189	13.04	0.07	9.3	90.5	0.2	-2.48	0.79	0.73	—	3.5	0.003	0.63	0.0	0.05	14.64	0.00	2.379	8.56	0.00	9.0	91.0	0.1	-2.28	0.35	0.79	0.73	—	13746	1732	4	0	2	0	0	logfile
✔	8E99	27961	2025-05-19	2022-08-26	4.24	4.70	4.25	4.5	0.004	0.84	2.0	0.05	11.61	0.01	1.579	8.15	0.30	7.4	92.2	0.3	-1.79	0.73	0.75	—	4.5	0.003	0.69	0.0	0.04	10.67	0.00	2.372	4.63	0.00	7.2	92.6	0.2	-1.33	0.50	0.74	0.77	—	17583	2710	11	0	10	0	0	logfile
✔	8E92	27953	2025-05-19	2022-08-26	3.96	4.42	3.97	4.3	0.012	1.23	6.0	0.05	20.03	0.01	2.130	12.83	1.03	9.8	90.1	0.1	-2.71	0.72	0.77	1.40	4.3	0.003	0.78	0.0	0.05	15.58	0.00	2.512	8.05	4.69	9.6	90.4	0.0	-1.70	0.94	0.73	0.78	1.39	18011	2580	17	0	31	0	0	logfile
✔	8E95	27956	2025-05-23	2022-08-26	2.9	3.13	2.98	3.2	0.004	0.77	0.0	0.05	14.08	0.00	1.796	5.87	4.39	4.7	95.0	0.3	-0.81	0.69	0.78	2.48	3.2	0.003	0.61	0.0	0.04	17.38	0.00	1.980	4.61	3.32	4.4	95.3	0.3	-0.21	1.22	0.66	0.79	2.15	23943	2909	9	68	3	0	0	logfile
✔	8GPN	34195	2025-05-16	2022-08-26	3.2	3.80	3.26	3.4	0.007	0.62	0.0	0.04	26.21	0.00	2.193	8.82	0.11	2.6	97.4	0.0	1.29	0.84	0.80	3.26	3.4	0.003	0.60	0.0	0.03	26.43	0.00	2.520	8.23	1.90	2.3	97.6	0.1	2.68	1.56	0.86	0.85	1.91	15047	1211	11	292	0	0	0	logfile
✔	8GPJ	34194	2025-05-20	2022-08-26	3.5	2.53	3.40	2.3	0.006	0.90	0.0	0.05	16.94	0.00	2.176	10.26	0.00	4.7	95.3	0.0	-0.48	0.77	0.77	3.23	2.2	0.004	0.73	0.0	0.05	15.03	0.00	2.480	8.80	3.13	4.5	95.5	0.0	-0.36	1.12	0.76	0.77	2.61	20259	2382	48	0	126	0	0	logfile
✔	8AVB	15677	2025-05-18	2022-08-26	4.43	5.51	5.10	4.3	0.005	0.81	1.0	0.05	11.64	0.01	2.142	17.52	0.00	4.4	95.4	0.2	-0.47	0.81	0.63	—	4.2	0.003	0.65	0.0	0.05	12.33	0.00	2.361	17.14	0.00	4.8	95.2	0.0	-0.93	1.61	0.81	0.66	—	10591	1326	3	0	0	0	0	logfile
✔	8E97	27958	2025-05-20	2022-08-26	4.19	3.55	4.21	3.4	0.009	1.19	6.0	0.07	14.17	0.01	1.822	12.52	1.35	13.4	85.9	0.7	-5.58	0.60	0.57	—	3.3	0.003	0.74	0.0	0.04	11.96	0.00	2.536	6.09	0.06	8.7	91.3	0.0	-1.46	0.68	0.71	0.79	—	20374	3074	10	0	15	0	0	logfile
✔	8E93	27954	2025-05-18	2022-08-26	3.71	4.07	3.71	4.0	0.005	0.85	4.0	0.05	16.77	0.01	2.066	8.37	0.65	8.7	91.3	0.0	-2.88	0.64	0.81	2.05	4.0	0.004	1.00	2.0	0.05	15.72	0.00	2.031	6.56	5.36	10.1	89.9	0.0	-1.75	1.27	0.65	0.83	1.92	16664	2320	11	0	18	0	0	logfile
✔	8AVD	15679	2025-05-21	2022-08-26	4.42	4.88	4.54	4.5	0.005	1.11	3.0	0.06	13.22	0.01	1.776	15.37	0.00	5.3	94.4	0.4	-0.68	0.80	0.73	—	4.5	0.003	0.70	0.0	0.05	13.30	0.00	2.134	12.74	0.07	3.9	96.1	0.0	1.01	0.69	0.82	0.77	—	12777	1617	9	0	3	0	0	logfile
✔	8GPG	34192	2025-05-17	2022-08-26	4.1	4.40	4.12	4.3	0.005	0.80	0.0	0.05	16.31	0.00	2.130	13.46	0.00	6.5	93.5	0.0	-1.43	0.72	0.77	—	4.3	0.004	0.75	0.0	0.05	14.29	0.00	2.348	10.55	0.00	5.9	94.1	0.0	-1.33	0.40	0.73	0.78	—	15864	1920	21	0	48	0	0	logfile
✔	8E98	27959	2025-05-18	2022-08-26	3.75	4.03	3.75	3.8	0.011	1.12	1.0	0.05	18.58	0.01	2.155	6.38	0.15	7.9	92.1	0.0	-1.29	0.79	0.76	1.70	3.8	0.005	0.79	0.0	0.05	14.83	0.00	2.303	6.22	4.18	8.1	91.8	0.0	-0.82	0.48	0.79	0.76	1.64	17208	2583	11	0	18	0	0	logfile
✔	8E96	27957	2025-05-21	2022-08-26	3.38	2.51	—	2.0	0.003	0.56	0.0	0.04	14.28	0.00	2.149	8.15	0.00	6.5	93.4	0.1	-1.58	0.78	0.75	2.05	2.0	0.003	0.59	0.0	0.04	15.67	0.00	2.510	6.33	0.88	6.4	93.6	0.1	-1.21	0.92	0.79	0.77	1.71	21924	2838	12	0	6	0	0	logfile
✔	8GPi	34193	2025-05-20	2022-08-26	3.0	2.28	2.93	2.1	0.005	0.80	0.0	0.05	14.80	0.00	2.188	5.16	0.00	2.2	97.8	0.0	0.49	0.78	0.78	3.49	2.1	0.004	0.63	0.0	0.04	14.26	0.00	2.410	4.24	2.23	2.2	97.8	0.0	0.77	1.11	0.79	0.81	3.21	20265	2364	50	0	132	0	0	logfile
✔	8AUR	15673	2025-05-10	2022-08-25	3.47	3.44	3.61	3.6	0.002	0.54	0.0	0.04	13.41	0.00	2.350	6.62	0.00	5.6	94.4	0.0	-1.30	0.72	0.82	2.41	3.5	0.003	0.61	0.0	0.04	15.86	0.00	2.398	6.62	3.72	6.8	93.1	0.1	-1.11	1.64	0.70	0.83	2.75	5409	699	3	0	0	0	0	logfile

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