Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YPo	34010	2025-05-14	2022-08-04	3.5	3.79	3.56	3.8	0.004	0.59	0.0	0.04	16.33	0.00	2.091	11.72	0.00	4.7	95.3	0.0	-1.80	0.56	0.78	2.30	3.8	0.003	0.59	0.0	0.04	18.74	0.00	2.483	8.65	1.77	3.1	96.9	0.0	-1.13	0.56	0.55	0.78	2.43	11324	1308	5	28	0	0	0	logfile
✔	8AMX	15528	2025-05-17	2022-08-04	2.55	2.79	2.59	2.7	0.004	0.63	0.0	0.04	11.93	0.01	2.414	2.40	0.00	2.4	97.2	0.3	2.10	0.64	0.86	3.96	2.7	0.003	0.57	0.0	0.04	15.14	0.00	2.653	3.42	0.94	3.0	96.7	0.3	2.78	0.21	0.69	0.89	3.10	15633	2024	16	0	0	57	0	logfile
✔	8DYA	27779	2025-05-11	2022-08-03	3.67	4.01	3.64	4.0	0.011	1.53	3.0	0.10	10.00	0.01	2.532	1.41	0.56	3.9	95.6	0.5	0.63	0.63	0.66	2.75	4.0	0.004	0.71	0.0	0.04	13.44	0.00	2.583	4.99	2.98	4.1	95.6	0.3	1.31	0.71	0.69	0.73	2.67	7896	1164	6	0	18	0	0	logfile
✔	7YPG	33999	2025-05-09	2022-08-03	2.5	2.00	2.07	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.004	0.67	0.0	0.05	17.74	0.00	2.640	9.21	6.41	8.5	91.5	0.0	-5.33	0.97	0.41	0.82	3.14	2676	354	6	0	0	0	0	logfile
✔	7YPJ	34002	2025-05-28	2022-08-03	3.8	4.94	3.92	3.8	0.008	1.26	0.0	0.07	13.23	0.01	2.167	19.20	0.12	8.5	91.5	0.1	-2.82	0.87	0.69	0.19	3.8	0.003	0.83	0.0	0.05	15.23	0.01	2.290	20.65	0.99	8.0	92.0	0.0	-1.55	1.24	0.88	0.73	0.40	30478	3865	9	0	4	0	0	logfile
✔	8DY6	27776	2025-05-21	2022-08-03	4.32	4.84	4.03	4.2	0.006	1.02	0.0	0.06	19.23	0.01	2.266	4.49	0.00	4.4	95.4	0.2	-1.13	0.82	0.86	—	4.2	0.003	0.63	0.0	0.04	12.86	0.00	2.398	6.80	0.00	3.9	96.1	0.0	-0.13	0.32	0.83	0.87	—	20778	2445	54	0	132	0	0	logfile
✔	7YP9	33996	2025-05-23	2022-08-03	3.58	3.68	3.59	3.7	0.005	0.66	0.0	0.05	14.96	0.01	2.140	5.57	0.08	3.4	96.6	0.0	-4.82	0.68	0.66	0.63	3.6	0.003	0.69	0.0	0.04	17.53	0.00	2.276	14.63	2.76	3.5	96.5	0.0	-0.97	1.25	0.73	0.75	0.90	24547	3013	10	61	3	0	0	logfile
✔	7YPA	33997	2025-05-25	2022-08-03	3.05	3.16	3.04	3.1	0.005	0.63	0.0	0.04	15.66	0.01	2.191	3.02	0.08	3.1	96.9	0.0	-3.59	0.76	0.81	2.49	3.1	0.003	0.63	0.0	0.04	17.85	0.00	2.071	4.53	1.53	2.5	97.5	0.0	0.05	1.39	0.78	0.87	2.58	26022	3129	10	86	3	0	0	logfile
✔	7YPH	34000	2025-05-28	2022-08-03	3.68	4.64	3.77	3.7	0.008	1.31	1.0	0.07	14.04	0.01	2.197	16.14	0.15	8.5	91.5	0.1	-3.48	0.81	0.63	0.30	3.6	0.003	0.79	0.0	0.05	15.85	0.00	2.455	20.95	1.79	7.8	92.2	0.0	-1.83	0.47	0.83	0.69	0.39	30407	3865	7	0	2	0	0	logfile
✔	8AMF	15525	2025-05-13	2022-08-03	3.8	4.56	—	4.4	0.007	0.99	0.0	0.07	18.67	0.01	2.281	6.91	0.77	7.6	92.4	0.0	-3.87	0.55	0.84	1.57	4.4	0.003	0.75	0.0	0.05	19.59	0.00	2.315	9.81	2.31	5.1	94.9	0.0	-0.95	1.36	0.55	0.83	1.44	10507	1332	10	20	4	0	0	logfile
✔	7YPB	33998	2025-05-24	2022-08-03	3.48	3.51	3.47	3.5	0.005	0.57	0.0	0.04	14.29	0.00	2.184	2.96	0.04	2.8	97.2	0.0	-4.01	0.71	0.72	1.57	3.5	0.003	0.58	0.0	0.04	17.05	0.00	2.019	6.11	1.91	2.8	97.2	0.0	-0.33	1.28	0.77	0.82	1.91	25626	3133	10	55	3	0	0	logfile
✔	8DXS	27775	2025-05-28	2022-08-03	3.76	3.97	3.79	3.9	0.009	1.05	3.0	0.06	15.68	0.01	1.986	7.94	0.27	5.2	94.6	0.2	-2.28	0.72	0.76	0.92	3.9	0.005	0.78	0.0	0.04	15.64	0.00	2.368	8.81	1.22	5.2	94.7	0.1	-1.14	0.50	0.73	0.78	0.94	30131	3791	12	0	44	0	0	logfile
✔	8DWU	27760	2025-05-20	2022-08-02	3.4	4.26	3.40	3.3	0.005	1.26	5.0	0.06	14.46	0.01	2.223	5.38	0.14	7.2	92.3	0.5	-1.91	0.71	0.59	1.60	3.3	0.003	0.79	0.0	0.04	15.74	0.00	2.427	10.53	0.70	7.5	92.2	0.3	-0.74	1.50	0.89	0.86	1.85	19690	2506	13	0	0	8	0	logfile
✔	7YoY	33990	2025-05-10	2022-08-02	3.64	4.09	3.73	4.0	0.008	1.15	0.0	0.07	13.20	0.01	2.303	3.96	0.20	9.6	90.4	0.0	-3.78	0.66	0.80	3.17	4.0	0.004	0.79	0.0	0.04	15.16	0.00	2.198	8.62	3.47	7.0	93.0	0.0	-1.76	0.55	0.68	0.82	2.87	4517	593	5	0	0	0	0	logfile
✔	7YoX	33989	2025-05-15	2022-08-02	3.95	4.33	4.08	4.1	0.008	1.31	8.0	0.10	27.06	0.01	0.786	33.58	46.70	1.0	98.8	0.2	2.84	0.82	0.70	0.48	4.1	0.008	0.88	0.0	0.05	19.32	0.00	2.061	19.29	5.71	2.9	97.1	0.0	0.19	1.37	0.84	0.77	0.15	13878	1749	6	0	0	0	0	logfile
✔	7YP2	33994	2025-05-09	2022-08-02	3.52	3.74	3.48	3.7	0.007	0.93	0.0	0.05	14.66	0.01	2.294	3.19	0.00	8.0	92.0	0.0	-4.80	0.68	0.87	2.84	3.7	0.004	0.58	0.0	0.04	15.70	0.00	2.570	4.26	2.13	5.4	94.6	0.0	-1.49	0.41	0.65	0.86	2.76	4248	546	3	0	0	0	0	logfile
✔	7YoV	33988	2025-05-15	2022-08-02	3.25	3.39	3.20	3.3	0.011	1.17	0.0	0.06	11.20	0.01	2.102	6.46	1.14	7.6	92.4	0.0	-3.95	0.72	0.76	2.51	3.3	0.003	0.66	0.0	0.04	15.05	0.00	2.386	8.90	1.94	3.7	96.3	0.0	0.07	2.47	0.74	0.81	1.55	13232	1683	5	0	0	0	0	logfile
✔	8DWV	27761	2025-05-18	2022-08-02	3.6	4.99	3.81	3.7	0.004	0.74	4.0	0.05	14.51	0.00	2.076	6.82	0.28	8.8	90.6	0.6	-1.14	0.69	0.46	1.16	3.6	0.003	0.79	0.0	0.04	16.28	0.00	2.536	14.60	1.16	8.3	91.4	0.4	-1.01	2.23	0.89	0.82	0.96	16480	2084	6	0	0	0	0	logfile
✔	7YoZ	33991	2025-05-12	2022-08-02	4.3	4.57	4.33	4.3	0.003	0.55	0.0	0.03	27.41	0.00	2.269	6.78	0.00	1.4	98.6	0.0	0.64	0.85	0.72	—	4.3	0.008	0.88	0.0	0.04	30.21	0.01	2.358	25.42	0.20	2.4	97.6	0.0	-0.13	2.17	0.90	0.85	—	9752	594	10	242	0	0	0	logfile
✔	8DWS	27758	2025-05-18	2022-08-02	3.73	4.92	3.73	3.6	0.004	0.79	4.0	0.05	14.37	0.00	2.013	6.84	0.32	8.2	91.2	0.6	-1.47	0.69	0.45	0.78	3.6	0.003	0.78	0.0	0.04	15.92	0.00	2.364	12.05	0.90	8.3	91.4	0.3	-0.72	1.96	0.90	0.82	0.29	17229	2182	7	0	0	0	0	logfile

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