Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YoT	33986	2025-05-14	2022-08-02	3.0	3.12	2.07	3.1	0.009	1.03	0.0	0.06	10.47	0.01	2.279	4.54	0.66	4.2	95.8	0.0	-3.64	0.71	0.85	3.78	3.1	0.002	0.55	0.0	0.04	15.37	0.00	2.514	5.72	1.76	2.6	97.4	0.0	0.77	1.20	0.71	0.86	2.66	12182	1551	5	0	0	0	0	logfile
✔	8DWS	27758	2025-05-18	2022-08-02	3.73	4.92	3.73	3.6	0.004	0.79	4.0	0.05	14.37	0.00	2.013	6.84	0.32	8.2	91.2	0.6	-1.47	0.69	0.45	0.78	3.6	0.003	0.78	0.0	0.04	15.92	0.00	2.364	12.05	0.90	8.3	91.4	0.3	-0.72	1.96	0.90	0.82	0.29	17229	2182	7	0	0	0	0	logfile
✔	8DWU	27760	2025-05-20	2022-08-02	3.4	4.26	3.40	3.3	0.005	1.26	5.0	0.06	14.46	0.01	2.223	5.38	0.14	7.2	92.3	0.5	-1.91	0.71	0.59	1.60	3.3	0.003	0.79	0.0	0.04	15.74	0.00	2.427	10.53	0.70	7.5	92.2	0.3	-0.74	1.50	0.89	0.86	1.85	19690	2506	13	0	0	8	0	logfile
✔	8DXP	27772	2025-05-18	2022-08-02	3.7	3.99	3.78	3.9	0.003	0.55	0.0	0.04	14.49	0.00	2.258	6.19	0.00	6.4	93.6	0.0	0.53	0.67	0.74	1.45	3.9	0.005	0.68	0.0	0.04	16.99	0.00	2.146	8.54	3.10	6.5	93.5	0.0	0.42	2.27	0.68	0.78	0.92	17465	2097	7	0	0	0	0	logfile
✔	8DXQ	27773	2025-05-13	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.002	0.48	0.0	0.04	3.91	0.00	2.540	0.13	0.00	7.5	92.4	0.0	1.35	0.30	0.64	0.68	—	10435	2101	7	0	0	0	0	logfile
✔	8DWV	27761	2025-05-18	2022-08-02	3.6	4.99	3.81	3.7	0.004	0.74	4.0	0.05	14.51	0.00	2.076	6.82	0.28	8.8	90.6	0.6	-1.14	0.69	0.46	1.16	3.6	0.003	0.79	0.0	0.04	16.28	0.00	2.536	14.60	1.16	8.3	91.4	0.4	-1.01	2.23	0.89	0.82	0.96	16480	2084	6	0	0	0	0	logfile
✔	7YoV	33988	2025-05-15	2022-08-02	3.25	3.39	3.20	3.3	0.011	1.17	0.0	0.06	11.20	0.01	2.102	6.46	1.14	7.6	92.4	0.0	-3.95	0.72	0.76	2.51	3.3	0.003	0.66	0.0	0.04	15.05	0.00	2.386	8.90	1.94	3.7	96.3	0.0	0.07	2.47	0.74	0.81	1.55	13232	1683	5	0	0	0	0	logfile
✔	7YoY	33990	2025-05-10	2022-08-02	3.64	4.09	3.73	4.0	0.008	1.15	0.0	0.07	13.20	0.01	2.303	3.96	0.20	9.6	90.4	0.0	-3.78	0.66	0.80	3.17	4.0	0.004	0.79	0.0	0.04	15.16	0.00	2.198	8.62	3.47	7.0	93.0	0.0	-1.76	0.55	0.68	0.82	2.87	4517	593	5	0	0	0	0	logfile
✔	8DWH	27754	2025-05-10	2022-08-01	3.25	2.21	3.25	2.1	0.004	0.57	0.0	0.04	12.92	0.00	2.129	7.56	0.00	3.4	96.6	0.0	-0.94	0.73	0.78	4.11	2.1	0.004	0.60	0.0	0.04	15.37	0.00	2.598	5.33	2.02	3.3	96.7	0.0	0.92	0.96	0.73	0.80	3.18	6444	858	5	0	1	0	0	logfile
✔	7YoN	33984	2025-05-12	2022-08-01	2.95	2.24	—	3.0	0.003	0.49	0.0	0.04	13.74	0.00	2.155	3.67	0.00	2.7	97.3	0.0	0.20	0.78	0.83	3.97	3.0	0.004	0.90	1.0	0.05	15.67	0.00	2.072	3.56	2.49	2.2	97.7	0.1	1.37	0.34	0.78	0.85	3.08	9161	1166	8	0	0	2	0	logfile
✔	7Yoo	33985	2025-05-12	2022-08-01	3.11	2.28	—	3.2	0.003	0.44	0.0	0.04	13.43	0.00	2.153	3.82	0.00	1.7	98.3	0.0	-0.16	0.78	0.81	3.56	3.2	0.003	0.55	0.0	0.04	15.17	0.00	2.565	3.60	2.09	2.5	97.5	0.0	0.66	0.92	0.79	0.84	3.21	9188	1169	6	0	0	0	0	logfile
✔	8ALZ	15521	2025-05-18	2022-08-01	3.4	4.20	3.42	3.8	0.003	0.72	0.0	0.04	16.77	0.01	2.204	15.40	0.39	4.5	95.4	0.0	-0.91	0.90	0.78	0.63	3.8	0.004	0.91	1.0	0.05	17.34	0.00	1.280	17.35	2.77	5.1	94.8	0.0	-1.02	0.91	0.91	0.82	0.76	16409	2041	3	0	2	0	0	logfile
✔	8DWC	27752	2025-05-11	2022-08-01	2.87	2.13	2.85	2.0	0.008	0.65	0.0	0.05	12.54	0.00	2.095	7.28	0.00	4.8	95.2	0.0	-1.14	0.76	0.81	4.35	2.0	0.004	0.59	0.0	0.04	15.09	0.00	2.503	4.87	1.53	3.7	96.3	0.0	1.15	0.34	0.77	0.83	3.17	8298	1102	6	0	0	0	0	logfile
✔	7Yo2	33979	2025-05-26	2022-08-01	3.3	2.97	3.16	3.1	0.002	0.50	0.0	0.04	13.87	0.00	2.147	6.53	0.03	2.3	97.7	0.0	0.67	0.63	0.83	3.00	3.1	0.003	0.53	0.0	0.04	15.70	0.00	2.462	5.35	1.60	2.2	97.8	0.0	0.94	0.38	0.65	0.85	3.03	27884	3512	4	0	0	0	0	logfile
✔	7Yo3	33980	2025-05-12	2022-08-01	3.1	2.47	2.92	2.9	0.004	0.67	0.0	0.05	13.95	0.01	2.207	9.01	0.21	3.7	96.3	0.0	0.21	0.26	0.61	1.96	2.9	0.002	0.55	0.0	0.04	16.35	0.00	2.057	6.51	2.06	2.1	97.9	0.0	0.75	0.77	0.30	0.74	2.35	8961	1144	3	0	3	0	0	logfile
✔	8DWG	27753	2025-05-11	2022-08-01	2.71	2.08	2.72	1.8	0.005	0.60	0.0	0.04	12.58	0.00	2.106	6.68	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.8	0.003	0.59	0.0	0.04	14.82	0.00	2.536	4.72	2.11	3.9	96.1	0.0	1.18	0.34	0.80	0.83	3.86	8350	1101	7	0	1	0	0	logfile
✔	7YoJ	33983	2025-05-14	2022-08-01	3.36	3.79	3.57	3.7	0.005	0.87	0.0	0.05	24.11	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.003	0.63	0.0	0.04	23.65	0.00	2.395	11.19	3.14	5.1	94.8	0.1	0.27	0.98	0.78	0.82	1.73	11545	867	4	216	0	0	0	logfile
✔	7Yo5	33982	2025-05-26	2022-08-01	3.9	3.18	3.65	3.5	0.003	0.64	2.0	0.05	13.52	0.00	1.245	11.54	0.29	2.8	97.2	0.0	-0.51	0.57	0.70	1.36	3.1	0.003	0.64	0.0	0.04	16.31	0.00	2.242	9.98	2.61	3.2	96.8	0.0	-0.29	1.64	0.59	0.73	1.45	27844	3492	8	0	8	0	0	logfile
✔	8DWJ	27756	2025-05-09	2022-08-01	3.9	3.19	3.77	3.1	0.008	1.18	0.0	0.06	16.24	0.01	2.218	13.71	0.33	5.9	94.1	0.0	-2.71	0.33	0.57	0.88	3.0	0.003	0.78	0.0	0.05	18.08	0.01	2.488	14.55	2.33	4.7	95.3	0.0	-1.38	1.41	0.33	0.58	0.78	3043	339	4	11	2	0	0	logfile
✔	8DWi	27755	2025-05-09	2022-08-01	3.4	4.06	3.54	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.77	0.0	0.04	16.40	0.01	2.556	10.13	2.87	6.0	94.0	0.0	-0.47	1.65	0.47	0.71	2.20	3192	424	1	0	0	0	0	logfile

• ← previous
• Page 323 of 642
• next →