Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YNS	33970	2025-05-09	2022-07-31	3.0	2.79	2.25	3.1	0.009	0.66	0.0	0.06	11.51	0.00	2.233	10.18	0.00	5.1	94.9	0.0	-3.28	0.51	0.87	6.08	3.1	0.002	0.51	0.0	0.05	13.93	0.00	2.653	3.65	1.94	2.3	97.7	0.0	-1.87	0.91	0.48	0.87	4.55	2526	366	6	0	0	0	0	logfile
✔	7YNP	33968	2025-05-09	2022-07-31	2.8	2.38	2.15	3.4	0.012	0.97	0.0	0.06	13.69	0.00	2.265	10.48	0.00	6.5	93.5	0.0	-3.88	0.39	0.78	4.28	3.5	0.002	0.47	0.0	0.05	15.91	0.00	2.644	5.90	4.26	3.1	96.9	0.0	-2.28	1.79	0.33	0.79	5.02	2568	366	8	0	2	0	0	logfile
✔	7YNM	33966	2025-05-09	2022-07-31	2.9	2.93	2.39	3.0	0.012	0.99	0.0	0.05	14.59	0.00	2.219	39.00	0.00	3.6	96.4	0.0	-2.80	0.45	0.70	4.24	3.1	0.004	0.67	0.0	0.05	17.65	0.00	2.538	12.54	4.94	8.9	91.1	0.0	-2.02	1.39	0.49	0.78	3.23	3528	488	12	0	8	0	0	logfile
✔	7YNR	33969	2025-05-09	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.003	0.47	0.0	0.05	12.92	0.00	2.618	3.46	0.00	4.2	95.8	0.0	-1.92	0.22	0.41	0.88	5.75	2526	366	6	0	0	0	0	logfile
✔	7YNo	33967	2025-05-09	2022-07-31	2.8	2.92	2.22	3.1	0.008	0.79	0.0	0.05	12.19	0.00	2.252	22.12	0.00	7.3	92.7	0.0	-3.47	0.41	0.77	5.69	3.1	0.003	0.64	0.0	0.05	14.99	0.00	2.631	6.48	1.55	5.1	94.9	0.0	-2.07	0.36	0.43	0.80	5.36	2562	366	8	0	2	0	0	logfile
✔	7YNi	33962	2025-05-10	2022-07-31	3.26	3.56	2.98	3.6	0.004	0.66	0.0	0.04	10.92	0.01	2.206	19.26	0.00	5.0	94.5	0.5	0.78	0.44	0.69	1.96	3.6	0.004	0.71	0.0	0.04	14.02	0.01	2.483	13.98	2.09	5.5	94.2	0.3	1.28	0.94	0.49	0.72	1.34	4387	594	3	0	1	0	0	logfile
✔	7YNT	33971	2025-05-09	2022-07-31	3.1	2.98	2.25	4.1	0.004	0.59	0.0	0.06	11.35	0.00	2.275	13.34	0.00	8.9	91.1	0.0	-5.55	0.42	0.70	4.17	4.1	0.005	0.70	0.0	0.06	13.64	0.00	2.570	8.62	2.08	14.9	85.1	0.0	-4.24	0.46	0.36	0.64	4.14	2364	348	6	0	0	0	0	logfile
✔	7YNJ	33963	2025-05-10	2022-07-31	3.33	3.63	3.36	3.7	0.004	0.68	0.0	0.04	12.78	0.01	2.249	13.26	0.00	3.8	96.2	0.0	1.41	0.55	0.72	1.45	3.7	0.003	0.64	0.0	0.04	15.44	0.01	2.591	12.00	4.48	4.5	95.5	0.0	1.59	0.43	0.52	0.73	1.34	4371	592	3	0	1	0	0	logfile
✔	8DW6	27751	2025-05-23	2022-07-31	3.5	2.65	3.48	3.2	0.004	0.65	0.0	0.05	12.25	0.00	1.856	11.91	2.26	5.1	94.9	0.0	0.45	0.55	0.61	1.11	2.6	0.003	0.66	0.0	0.04	17.04	0.00	1.914	11.70	2.22	5.5	94.5	0.0	0.21	1.23	0.56	0.66	1.47	23694	2914	15	17	11	0	0	logfile
✔	8DW2	27749	2025-05-12	2022-07-30	4.11	4.56	4.34	4.3	0.003	0.81	0.0	0.05	17.65	0.01	2.127	18.20	0.48	6.2	93.7	0.1	-0.94	0.76	0.78	—	4.3	0.003	0.71	0.0	0.04	13.99	0.01	2.424	13.00	0.00	7.4	92.6	0.1	-0.80	1.04	0.77	0.80	—	9364	1223	7	0	3	0	0	logfile
✔	7YN9	33955	2025-05-15	2022-07-30	3.53	3.69	3.49	3.6	0.007	0.83	0.0	0.05	16.33	0.01	2.151	9.81	0.38	15.4	84.4	0.2	-5.33	0.81	0.86	2.74	3.6	0.004	0.68	0.0	0.04	17.35	0.00	2.391	6.45	2.04	10.7	89.1	0.2	-3.07	0.38	0.80	0.86	2.70	13068	1514	2	38	0	0	0	logfile
✔	7YND	33959	2025-05-19	2022-07-30	3.29	3.46	3.34	3.4	0.007	0.79	1.0	0.05	17.74	0.01	2.213	8.16	1.46	10.5	89.2	0.2	-4.25	0.81	0.86	2.29	3.4	0.003	0.61	0.0	0.04	18.20	0.00	2.482	4.50	1.67	7.7	92.3	0.0	-1.31	0.38	0.82	0.88	2.09	18098	2115	3	38	0	0	0	logfile
✔	7YNB	33957	2025-05-16	2022-07-30	3.46	3.65	3.47	3.6	0.005	0.72	0.0	0.05	18.41	0.01	2.127	7.12	1.26	11.0	88.8	0.2	-4.52	0.83	0.87	2.37	3.6	0.004	0.65	0.0	0.04	18.56	0.00	2.468	4.10	2.08	10.7	89.3	0.0	-1.91	1.15	0.84	0.89	2.04	13847	1536	3	66	0	0	0	logfile
✔	7YNG	33961	2025-05-09	2022-07-30	3.1	3.08	2.47	3.4	0.009	0.85	0.0	0.06	13.71	0.00	2.192	9.66	0.00	10.4	89.6	0.0	-4.25	0.36	0.76	3.68	3.4	0.003	0.51	0.0	0.05	14.87	0.00	2.597	5.57	0.37	3.3	96.7	0.0	-2.17	0.35	0.34	0.75	3.93	2628	378	6	0	0	0	0	logfile
✔	7YNC	33958	2025-05-16	2022-07-30	3.14	3.40	3.23	3.4	0.003	0.65	0.0	0.04	18.05	0.01	2.130	6.93	1.04	10.6	89.4	0.1	-4.51	0.77	0.84	2.55	3.4	0.003	0.64	0.0	0.04	18.50	0.00	2.320	4.66	2.98	10.6	89.4	0.0	-2.04	1.16	0.79	0.87	2.27	13848	1536	3	66	0	0	0	logfile
✔	8DW3	27750	2025-05-12	2022-07-30	4.26	4.66	4.45	4.4	0.014	0.97	0.0	0.05	17.59	0.01	2.105	15.23	0.10	5.7	94.2	0.1	-0.89	0.75	0.69	—	4.4	0.003	0.71	0.0	0.04	13.31	0.00	2.328	11.28	0.00	6.1	93.9	0.0	-0.76	1.18	0.78	0.80	—	9351	1223	7	0	3	0	0	logfile
✔	8DVi	27739	2025-05-23	2022-07-29	3.2	2.70	3.23	3.1	0.004	0.68	0.0	0.05	12.49	0.00	1.856	10.77	1.78	4.9	95.1	0.0	0.23	0.65	0.78	2.56	2.7	0.004	0.66	0.0	0.04	16.73	0.00	1.861	9.05	2.26	5.3	94.7	0.0	0.41	0.81	0.67	0.82	2.29	23693	2914	14	17	10	0	0	logfile
✔	7YMY	33947	2025-05-26	2022-07-29	4.96	9.09	5.33	5.2	0.006	1.01	3.0	0.06	16.64	0.01	2.203	11.52	0.50	8.6	91.2	0.2	-2.07	0.89	0.80	—	5.2	0.003	0.74	0.0	0.05	14.48	0.00	2.381	19.45	0.00	7.4	92.6	0.0	-1.48	0.58	0.91	0.86	—	27677	3498	15	0	46	0	0	logfile
✔	8DVU	27745	2025-05-10	2022-07-29	2.9	3.07	2.86	3.0	0.003	0.62	0.0	0.04	16.46	0.00	2.164	6.25	1.01	6.2	93.8	0.0	-2.23	0.73	0.84	3.49	3.0	0.003	0.57	0.0	0.04	17.83	0.00	2.046	4.91	3.02	7.1	92.9	0.0	0.60	0.41	0.70	0.84	3.43	6170	669	3	36	3	0	0	logfile
✔	7YMX	33946	2025-05-26	2022-07-29	4.44	8.52	4.33	4.6	0.004	0.84	2.0	0.05	15.81	0.01	2.240	7.67	0.33	5.9	94.1	0.1	-1.19	0.89	0.80	—	4.6	0.003	0.65	0.0	0.04	14.11	0.00	2.458	13.22	0.00	5.9	94.0	0.0	-0.74	1.22	0.92	0.75	—	27775	3498	18	0	53	0	0	logfile

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