Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DTo	27706	2025-05-21	2022-07-26	3.57	3.93	3.48	3.6	0.007	0.98	0.0	0.06	19.84	0.01	2.241	3.34	0.00	4.6	95.4	0.0	-1.43	0.81	0.84	2.58	3.6	0.003	0.60	0.0	0.04	13.98	0.00	2.166	5.08	1.23	3.9	96.1	0.0	-0.38	0.28	0.81	0.85	2.54	20923	2445	54	0	146	0	0	logfile
✔	8DU4	27715	2025-05-22	2022-07-26	3.55	3.67	3.48	3.6	0.004	0.69	0.0	0.04	25.34	0.01	2.118	14.07	1.78	4.2	95.8	0.0	-1.95	0.57	0.52	0.73	3.6	0.007	1.15	1.0	0.05	26.53	0.01	2.090	20.61	2.58	10.2	89.6	0.2	-2.06	1.08	0.64	0.63	1.36	17407	1446	13	292	0	0	0	logfile
✔	7YL0	33901	2025-05-09	2022-07-25	3.2	3.47	3.15	3.4	0.015	2.45	0.0	0.11	14.13	0.01	2.515	18.86	0.00	5.0	95.0	0.0	-4.14	0.41	0.74	4.76	3.4	0.005	0.79	0.0	0.04	16.69	0.00	2.537	7.27	1.85	10.0	90.0	0.0	-4.56	1.65	0.44	0.78	5.39	2958	396	12	0	0	0	0	logfile
✔	7YL7	33903	2025-05-09	2022-07-25	3.3	3.54	3.17	3.5	0.009	0.87	0.0	0.04	14.87	0.00	2.196	22.56	0.00	4.9	95.1	0.0	-5.16	0.45	0.78	4.82	3.4	0.003	0.54	0.0	0.04	12.90	0.00	2.574	3.43	1.85	6.6	93.4	0.0	-5.06	0.63	0.45	0.78	5.16	2988	402	12	0	0	0	0	logfile
✔	7YKW	33897	2025-05-09	2022-07-25	3.6	4.09	3.10	4.0	0.010	1.66	0.0	0.09	11.46	0.00	2.538	10.73	0.00	3.9	96.1	0.0	-3.01	0.63	0.78	4.01	4.0	0.006	0.76	0.0	0.04	13.73	0.00	2.353	7.24	1.44	0.9	99.1	0.0	-4.38	1.49	0.63	0.76	4.06	1908	256	8	0	0	0	0	logfile
✔	8DTB	27695	2025-05-16	2022-07-25	3.14	3.27	3.11	3.2	0.003	0.62	0.0	0.04	18.08	0.00	2.175	9.05	0.99	1.9	98.1	0.0	1.18	0.66	0.74	0.59	3.2	0.004	0.62	0.0	0.04	17.29	0.00	2.311	8.30	3.87	2.6	97.4	0.0	0.94	1.15	0.69	0.80	1.06	13724	1765	9	0	7	0	0	logfile
✔	7YL3	33902	2025-05-09	2022-07-25	3.2	3.58	3.20	3.5	0.017	2.14	0.0	0.06	10.32	0.00	1.654	22.50	0.00	3.3	96.7	0.0	-4.03	0.45	0.76	4.44	3.5	0.007	0.78	0.0	0.04	15.88	0.00	2.531	4.67	4.94	11.7	88.3	0.0	-4.76	1.28	0.42	0.75	5.08	2958	396	12	0	0	0	0	logfile
✔	8DTK	27703	2025-05-10	2022-07-25	3.77	3.96	3.71	4.0	0.005	0.79	0.0	0.09	16.06	0.01	2.096	4.32	0.00	4.5	95.5	0.0	-2.29	0.63	0.71	2.78	4.0	0.004	0.69	0.0	0.09	15.77	0.00	2.393	8.22	1.04	9.0	91.0	0.0	-2.35	0.54	0.65	0.74	2.59	6914	449	4	0	2	0	3363	logfile
✔	8DT3	27690	2025-05-09	2022-07-25	3.3	3.99	3.54	3.7	0.004	0.71	0.0	0.04	17.52	0.00	2.125	10.67	0.00	8.2	91.8	0.0	-0.65	0.78	0.83	2.90	3.7	0.006	0.80	0.0	0.05	15.51	0.00	2.492	9.21	2.87	8.0	92.0	0.0	-0.50	0.40	0.79	0.86	2.84	3821	485	4	0	3	0	0	logfile
✔	8DTH	27698	2025-05-14	2022-07-25	3.6	3.70	3.52	3.6	0.003	0.60	0.0	0.04	12.28	0.01	2.196	3.90	0.00	5.5	94.5	0.0	-0.11	0.84	0.83	2.66	3.6	0.003	0.60	0.0	0.04	14.07	0.00	2.373	6.21	1.10	2.4	97.6	0.0	2.69	0.39	0.85	0.84	2.05	11153	1437	2	0	0	0	0	logfile
✔	7YL9	33215	2025-05-28	2022-07-25	4.7	4.87	4.74	4.7	0.005	0.78	0.0	0.05	13.47	0.00	1.401	29.51	0.00	6.8	93.0	0.2	-1.95	0.83	0.84	—	4.7	0.004	0.66	0.0	0.04	13.89	0.00	2.519	16.15	0.00	5.6	94.4	0.0	-1.50	0.51	0.82	0.84	—	31115	4067	7	0	0	0	0	logfile
✔	8AHX	15452	2025-05-15	2022-07-24	3.11	3.79	3.18	3.6	0.007	1.16	0.0	0.22	19.36	0.00	2.203	5.77	0.71	5.1	94.7	0.3	0.91	0.77	0.89	3.08	3.6	0.003	0.94	0.0	0.04	13.80	0.00	2.429	5.84	1.90	4.8	95.0	0.1	1.27	0.91	0.76	0.88	2.54	12687	1608	13	0	24	0	0	logfile
✔	7YKS	33896	2025-05-19	2022-07-23	3.0	3.20	3.05	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.003	0.77	0.0	0.04	16.45	0.00	2.384	7.31	1.47	4.3	95.7	0.0	-0.48	2.08	0.58	0.79	1.59	18984	2364	4	0	0	0	0	logfile
✔	7YKR	33895	2025-05-29	2022-07-23	3.2	3.70	3.33	4.7	0.008	1.02	8.0	0.06	10.92	0.01	2.215	4.01	0.83	9.3	90.7	0.0	-6.34	0.34	0.19	0.00	3.6	0.005	0.81	0.0	0.05	16.01	0.00	2.346	7.75	1.10	7.8	92.2	0.0	-1.61	2.86	0.64	0.78	2.18	31924	4140	4	0	0	0	0	logfile
✔	7YKD	33891	2025-05-12	2022-07-22	2.81	3.29	2.94	3.2	0.012	0.86	0.0	0.06	14.19	0.00	2.118	15.46	0.10	5.0	95.0	0.0	-0.18	0.70	0.83	4.27	3.2	0.004	0.69	0.0	0.04	15.06	0.00	2.482	8.15	2.29	3.7	96.3	0.0	0.59	0.92	0.63	0.81	3.26	8965	1133	7	0	5	0	0	logfile
✔	7YK8	33890	2025-05-09	2022-07-22	2.8	2.62	1.74	2.8	0.005	0.66	0.0	0.06	11.56	0.00	2.465	18.20	0.00	8.5	91.5	0.0	-3.55	0.46	0.82	1.92	2.8	0.003	0.63	0.0	0.05	16.97	0.00	2.614	7.53	10.26	8.5	91.5	0.0	-2.89	1.14	0.43	0.82	1.95	3108	450	12	0	0	0	0	logfile
✔	7YKJ	33892	2025-05-10	2022-07-22	3.5	3.71	3.61	3.7	0.013	1.78	1.0	0.09	15.54	0.04	1.761	8.58	2.98	6.6	92.2	1.1	-2.51	0.51	0.72	1.70	3.7	0.004	0.77	0.0	0.05	15.53	0.01	2.514	11.26	4.37	5.7	94.0	0.3	-1.00	1.27	0.53	0.75	1.60	4811	626	4	0	0	0	0	logfile
✔	8DSP	27657	2025-05-11	2022-07-22	3.3	3.95	3.28	3.7	0.005	0.79	0.0	0.05	12.78	0.00	2.147	13.79	0.47	8.9	90.5	0.6	-1.65	0.69	0.65	0.69	3.7	0.003	0.59	0.0	0.04	15.19	0.00	2.170	9.40	1.18	8.9	90.7	0.4	-1.00	2.22	0.74	0.80	2.39	7745	490	3	0	0	0	3848	logfile
✔	8DRK	27677	2025-05-18	2022-07-21	2.95	3.45	3.10	3.4	0.006	0.84	0.0	0.05	19.55	0.01	2.212	5.78	0.28	2.0	98.0	0.0	0.83	0.62	0.81	1.98	3.4	0.003	0.55	0.0	0.04	16.96	0.00	2.400	6.90	2.78	2.1	97.9	0.0	2.45	0.60	0.57	0.78	1.56	16443	1901	18	0	21	6	0	logfile
✔	8DS3	27682	2025-05-29	2022-07-21	3.07	2.62	3.13	3.2	0.005	0.90	0.0	0.05	17.58	0.01	2.212	11.43	0.28	4.5	95.5	0.0	-1.35	0.71	0.70	1.32	2.0	0.004	0.62	0.0	0.04	16.45	0.00	2.424	11.45	2.13	3.9	96.1	0.0	-0.52	0.47	0.73	0.79	1.12	32601	3888	18	0	21	6	0	logfile

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