Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DS9	27686	2025-05-14	2022-07-21	3.17	3.61	3.25	3.6	0.005	0.81	0.0	0.05	17.32	0.01	2.201	7.01	0.53	2.6	97.4	0.0	0.06	0.57	0.61	1.30	3.6	0.004	0.61	0.0	0.04	17.07	0.00	2.385	10.17	4.57	2.7	97.3	0.0	1.40	1.89	0.56	0.68	0.91	12039	1418	14	0	4	6	0	logfile
✔	8DSA	27687	2025-05-14	2022-07-21	3.48	3.75	3.47	3.7	0.005	0.81	0.0	0.05	17.32	0.01	2.201	7.06	0.53	2.6	97.4	0.0	0.06	0.59	0.63	1.34	3.7	0.003	0.64	0.0	0.04	17.17	0.00	2.561	10.58	3.50	2.5	97.5	0.0	1.62	2.75	0.61	0.68	0.75	12039	1418	14	0	4	6	0	logfile
✔	8DRQ	27681	2025-05-09	2022-07-21	4.16	4.28	4.57	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.83	0.0	0.05	13.80	0.00	2.579	20.55	0.00	7.7	92.3	0.0	-2.95	1.70	0.41	0.54	—	3321	407	1	0	0	0	0	logfile
✔	8DRP	27680	2025-05-17	2022-07-21	2.84	2.96	2.82	2.9	0.004	0.71	0.0	0.04	17.64	0.00	2.282	11.96	3.22	2.2	97.8	0.0	1.89	0.65	0.78	2.65	2.9	0.005	0.68	0.0	0.04	17.15	0.00	2.574	9.36	3.77	2.6	97.2	0.1	1.62	1.16	0.66	0.81	2.98	15816	2048	8	0	12	0	0	logfile
✔	7YK6	33888	2025-05-12	2022-07-21	3.03	2.39	3.06	2.1	0.006	0.73	0.0	0.05	14.22	0.01	2.130	11.24	0.21	5.5	94.4	0.1	-0.18	0.73	0.74	2.51	2.1	0.005	0.67	0.0	0.05	16.32	0.00	2.509	8.93	2.77	5.6	94.4	0.0	0.16	1.12	0.74	0.76	1.94	8736	1118	6	0	1	0	0	logfile
✔	7YK2	33884	2025-05-09	2022-07-21	2.8	2.60	2.35	2.8	0.005	0.82	0.0	0.05	11.38	0.00	2.424	12.82	0.00	11.5	88.5	0.0	-3.89	0.42	0.78	3.09	2.8	0.004	0.64	0.0	0.05	14.93	0.00	2.581	6.13	2.96	9.0	91.0	0.0	-2.68	0.46	0.42	0.79	3.42	2628	378	6	0	0	0	0	logfile
✔	8DRN	27678	2025-05-10	2022-07-21	4.12	4.23	4.08	4.2	0.004	0.98	0.0	0.05	15.67	0.01	2.264	18.85	0.26	6.6	93.4	0.0	-2.70	0.54	0.68	—	4.1	0.003	0.79	0.0	0.05	13.92	0.00	2.367	19.37	0.13	5.6	94.4	0.0	-2.20	1.88	0.59	0.72	—	6578	811	2	0	0	0	0	logfile
✔	8DS6	27684	2025-05-13	2022-07-21	4.9	4.18	4.54	3.7	0.012	1.43	0.0	0.06	10.65	0.01	2.494	0.39	0.00	1.4	98.6	0.0	1.06	0.85	0.67	—	3.7	0.002	0.57	0.0	0.04	11.86	0.01	2.457	6.32	0.00	2.0	98.0	0.0	1.72	1.11	0.85	0.63	—	10135	669	2	0	0	0	5107	logfile
✔	8DRK	27677	2025-05-18	2022-07-21	2.95	3.45	3.10	3.4	0.006	0.84	0.0	0.05	19.55	0.01	2.212	5.78	0.28	2.0	98.0	0.0	0.83	0.62	0.81	1.98	3.4	0.003	0.55	0.0	0.04	16.96	0.00	2.400	6.90	2.78	2.1	97.9	0.0	2.45	0.60	0.57	0.78	1.56	16443	1901	18	0	21	6	0	logfile
✔	8DS3	27682	2025-05-29	2022-07-21	3.07	2.62	3.13	3.2	0.005	0.90	0.0	0.05	17.58	0.01	2.212	11.43	0.28	4.5	95.5	0.0	-1.35	0.71	0.70	1.32	2.0	0.004	0.62	0.0	0.04	16.45	0.00	2.424	11.45	2.13	3.9	96.1	0.0	-0.52	0.47	0.73	0.79	1.12	32601	3888	18	0	21	6	0	logfile
✔	7YJM	33874	2025-05-12	2022-07-20	3.2	3.29	3.08	3.2	0.008	1.05	0.0	0.06	19.54	0.00	1.946	17.47	17.31	9.4	89.4	1.2	-4.69	0.74	0.88	2.07	3.2	0.003	0.63	0.0	0.04	17.14	0.00	2.611	4.04	3.52	4.5	95.3	0.2	-0.90	0.41	0.73	0.89	2.08	8895	1120	7	0	2	0	0	logfile
✔	8DR8	27674	2025-05-18	2022-07-20	3.04	3.55	3.20	3.5	0.007	0.82	0.0	0.05	20.92	0.00	2.216	6.05	0.17	2.2	97.8	0.0	0.91	0.61	0.79	1.54	3.5	0.003	0.53	0.0	0.04	16.93	0.00	2.467	8.44	2.87	2.4	97.6	0.0	1.97	0.40	0.58	0.78	1.59	16270	1878	18	0	20	6	0	logfile
✔	7YJN	33875	2025-05-11	2022-07-20	3.4	3.63	3.44	3.6	0.019	1.74	21.0	0.13	15.89	0.01	1.776	26.04	8.37	11.1	87.0	1.9	-2.39	0.70	0.83	2.69	3.6	0.003	0.69	0.0	0.04	16.21	0.00	2.498	5.51	3.80	6.2	93.6	0.2	0.06	1.19	0.69	0.83	1.98	8528	1095	6	0	1	0	0	logfile
✔	8DRE	27676	2025-05-25	2022-07-20	3.18	2.53	3.23	2.0	0.006	0.80	0.0	0.05	19.10	0.01	2.216	8.37	0.25	3.5	96.5	0.0	-0.71	0.73	0.76	1.15	2.0	0.004	0.70	1.0	0.04	17.07	0.00	2.471	11.46	2.24	3.5	96.5	0.0	0.15	1.14	0.73	0.79	1.27	25940	3069	18	0	20	6	0	logfile
✔	7YJK	33873	2025-05-18	2022-07-20	3.2	3.33	3.17	3.3	0.008	0.89	0.0	0.05	14.22	0.01	2.223	8.05	0.21	7.1	92.1	0.7	-3.10	0.72	0.86	3.03	3.3	0.002	0.58	0.0	0.04	15.57	0.00	2.478	3.97	0.79	3.8	96.0	0.2	-0.56	1.57	0.71	0.86	2.34	17658	2236	10	0	4	0	0	logfile
✔	8DRA	27675	2025-05-13	2022-07-20	3.98	4.17	3.98	4.0	0.003	0.77	0.0	0.05	15.74	0.01	2.257	11.58	0.35	5.4	94.6	0.0	-3.01	0.63	0.69	0.62	4.0	0.003	0.81	0.0	0.05	17.31	0.00	2.507	19.82	3.34	6.5	93.5	0.0	-2.92	2.05	0.67	0.76	0.68	9899	1218	3	0	0	0	0	logfile
✔	8AG3	15414	2025-05-09	2022-07-19	3.47	2.17	3.24	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	1.8	0.004	0.63	0.0	0.05	17.38	0.01	2.440	8.14	3.25	8.8	91.2	0.0	-1.30	0.34	0.63	0.77	2.96	2632	322	2	0	0	0	0	logfile
✔	7YJ1	33868	2025-05-12	2022-07-19	3.1	3.27	2.96	3.2	0.006	0.84	0.0	0.05	18.00	0.00	1.486	11.68	9.53	7.4	91.9	0.7	-3.00	0.72	0.88	2.84	3.2	0.003	0.58	1.0	0.04	17.00	0.00	2.239	3.49	2.46	4.5	95.5	0.0	-0.22	0.35	0.70	0.87	2.36	9140	1154	6	0	1	0	0	logfile
✔	8AG5	15416	2025-05-15	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.004	0.53	0.0	0.04	17.84	0.00	2.316	5.63	2.94	3.8	96.2	0.0	0.43	0.24	0.77	0.78	2.90	13762	1703	4	0	0	0	0	logfile
✔	7YJ4	33871	2025-05-12	2022-07-19	3.19	3.39	3.21	3.4	0.004	0.67	0.0	0.05	14.73	0.01	2.175	9.63	1.55	5.5	94.4	0.1	-0.72	0.60	0.73	1.95	3.4	0.003	0.65	0.0	0.04	16.04	0.00	2.398	8.39	1.03	4.9	95.1	0.0	-0.32	0.66	0.62	0.78	2.11	8985	1154	7	0	0	0	0	logfile

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