Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AG5	15416	2025-05-15	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.004	0.53	0.0	0.04	17.84	0.00	2.316	5.63	2.94	3.8	96.2	0.0	0.43	0.24	0.77	0.78	2.90	13762	1703	4	0	0	0	0	logfile
✔	7YJ2	33869	2025-05-12	2022-07-19	2.9	3.04	2.91	3.0	0.010	1.03	0.0	0.07	17.03	0.01	2.119	9.08	8.32	7.1	92.3	0.6	-3.30	0.69	0.86	3.49	3.0	0.003	0.60	0.0	0.04	17.08	0.00	2.584	2.84	3.80	5.2	94.8	0.0	-0.40	0.41	0.69	0.87	2.46	9124	1154	6	0	1	0	0	logfile
✔	7YiU	33864	2025-05-13	2022-07-18	2.9	3.02	2.83	3.0	0.008	1.08	1.0	0.07	19.63	0.01	1.932	14.64	16.13	6.5	92.3	1.2	-4.83	0.69	0.87	2.38	3.0	0.003	0.64	0.0	0.04	17.73	0.00	2.557	3.97	3.25	4.6	95.4	0.0	-0.89	1.16	0.70	0.88	2.40	9285	1166	7	0	4	0	0	logfile
✔	8DPZ	27644	2025-05-09	2022-07-18	3.38	3.59	2.04	3.5	0.004	0.77	0.0	0.05	13.01	0.01	2.363	1.84	0.00	3.6	96.4	0.0	-2.09	0.74	0.80	3.86	3.5	0.003	0.62	0.0	0.04	14.87	0.00	2.547	4.92	2.50	3.4	96.6	0.0	-1.27	1.15	0.75	0.83	3.41	3326	420	4	0	2	0	0	logfile
✔	8AFX	15411	2025-05-10	2022-07-18	4.8	5.07	4.58	5.0	0.005	0.90	0.0	0.05	16.08	0.01	2.159	17.10	1.05	6.1	93.9	0.0	-0.47	0.60	0.65	—	5.0	0.003	0.73	0.0	0.05	12.31	0.00	2.615	7.16	0.00	6.1	93.9	0.0	-1.10	0.58	0.74	0.80	—	2498	321	1	0	0	0	0	logfile
✔	8DQ0	27645	2025-05-21	2022-07-18	3.74	3.61	3.79	3.6	0.008	0.98	0.0	0.05	16.04	0.01	2.203	6.20	1.20	4.9	95.1	0.0	-1.54	0.53	0.72	2.38	3.6	0.003	0.53	0.0	0.04	16.72	0.00	2.238	7.13	1.52	3.9	96.1	0.0	0.14	1.37	0.56	0.74	2.16	17129	1075	6	0	2	0	8445	logfile
✔	7YiX	33865	2025-05-14	2022-07-18	2.96	3.52	3.10	3.4	0.003	0.52	0.0	0.04	13.44	0.00	2.001	3.35	0.00	3.6	96.4	0.0	-0.34	0.63	0.78	3.94	3.5	0.002	0.53	0.0	0.04	15.39	0.00	2.099	3.21	1.97	3.3	96.7	0.0	-0.22	1.14	0.64	0.80	3.80	11080	1416	10	0	20	0	0	logfile
✔	8AFH	15398	2025-05-15	2022-07-18	3.9	2.50	3.74	3.1	0.006	0.70	0.0	0.04	14.17	0.00	2.160	15.04	0.00	4.9	95.1	0.0	-1.29	0.61	0.62	1.09	2.1	0.004	0.65	0.0	0.04	17.40	0.00	2.500	11.11	4.58	4.5	95.5	0.0	1.37	1.59	0.63	0.66	0.66	13570	1760	20	0	0	0	0	logfile
✔	8AFM	15402	2025-05-11	2022-07-18	4.8	3.13	4.70	3.9	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.43	0.25	8.2	91.8	0.0	-3.48	0.46	0.51	—	3.0	0.004	0.80	0.0	0.04	15.41	0.01	2.350	12.60	0.00	5.2	94.8	0.0	-0.99	2.13	0.49	0.58	—	7842	1010	12	0	0	0	0	logfile
✔	8AFL	15401	2025-05-09	2022-07-18	4.4	3.03	4.23	2.2	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.68	0.25	8.4	91.6	0.0	-3.48	0.59	0.59	—	2.1	0.004	0.72	0.0	0.04	15.34	0.00	2.415	12.03	0.00	4.9	95.1	0.0	-0.77	0.85	0.59	0.58	—	3921	505	6	0	0	0	0	logfile
✔	8DQ1	27646	2025-05-21	2022-07-18	4.1	3.85	3.29	3.9	0.011	1.10	3.0	0.06	19.21	0.01	2.082	14.69	0.87	5.7	94.3	0.0	-1.40	0.44	0.67	—	3.9	0.004	0.58	0.0	0.04	17.69	0.00	2.305	11.91	0.00	4.5	95.5	0.0	0.05	1.95	0.55	0.74	—	17754	1075	8	36	2	0	8343	logfile
✔	7YiM	33861	2025-05-10	2022-07-17	2.6	2.93	2.74	2.9	0.013	1.15	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.004	0.67	0.0	0.04	17.88	0.00	2.468	8.46	1.16	3.1	96.9	0.0	0.74	1.24	0.64	0.66	1.19	4657	592	1	0	0	0	0	logfile
✔	8DPT	27642	2025-05-16	2022-07-17	4.0	4.13	3.96	4.1	0.004	1.21	2.0	0.06	14.57	0.01	2.093	16.97	0.41	5.5	93.9	0.6	-0.83	0.64	0.68	—	4.1	0.004	0.81	0.0	0.05	15.24	0.01	2.498	11.84	1.84	4.3	95.7	0.0	0.25	0.61	0.70	0.76	—	13550	1714	12	0	14	0	0	logfile
✔	8AFE	15395	2025-05-10	2022-07-17	3.3	2.35	3.31	2.0	0.006	0.70	0.0	0.04	14.17	0.00	2.161	14.08	0.00	4.9	95.1	0.0	-1.30	0.59	0.64	1.83	2.0	0.003	0.57	0.0	0.04	16.45	0.00	2.546	8.74	2.87	3.3	96.7	0.0	1.31	0.42	0.61	0.69	0.96	6785	880	10	0	0	0	0	logfile
✔	8DPS	27641	2025-05-13	2022-07-17	3.47	3.80	3.57	3.8	0.008	1.82	4.0	0.08	14.65	0.01	2.063	19.50	0.52	5.7	94.2	0.2	-0.57	0.68	0.72	1.72	3.8	0.003	0.80	0.0	0.05	15.14	0.00	2.496	9.15	1.83	3.5	96.5	0.0	0.11	0.50	0.69	0.74	1.37	10610	1324	12	0	14	0	0	logfile
✔	7YiH	33859	2025-05-21	2022-07-16	3.5	3.85	3.58	3.8	0.004	0.78	0.0	0.05	14.23	0.01	2.066	16.72	0.00	13.9	85.0	1.1	-2.65	0.61	0.68	1.55	3.8	0.004	0.75	0.0	0.05	16.49	0.01	2.474	12.30	2.77	14.0	84.9	1.1	-2.01	0.93	0.63	0.72	1.90	21321	2640	8	0	5	4	0	logfile
✔	7YiG	33858	2025-05-21	2022-07-16	3.6	3.86	3.62	3.8	0.003	0.57	0.0	0.04	14.21	0.00	2.152	7.15	0.00	7.8	91.9	0.3	-2.00	0.67	0.80	2.11	3.8	0.003	0.57	0.0	0.04	15.92	0.00	2.489	5.47	1.76	8.0	91.9	0.2	-1.39	0.92	0.68	0.80	1.92	21320	2640	8	0	4	4	0	logfile
✔	7YiJ	33860	2025-05-21	2022-07-16	3.8	4.24	3.94	4.1	0.004	0.92	0.0	0.05	14.45	0.01	2.135	19.50	0.00	13.3	85.3	1.4	-2.71	0.57	0.71	1.54	4.1	0.005	0.84	0.0	0.05	16.88	0.01	2.431	16.62	2.23	12.9	86.0	1.1	-2.07	0.80	0.58	0.72	1.61	21313	2640	5	0	1	0	0	logfile
✔	8AFA	15393	2025-05-12	2022-07-16	3.16	3.52	3.19	3.5	0.003	0.48	0.0	0.04	14.99	0.00	2.223	6.23	0.53	1.8	98.2	0.0	0.26	0.63	0.83	2.67	3.5	0.003	0.53	0.0	0.04	15.34	0.00	2.539	8.49	2.11	1.7	98.3	0.0	2.54	0.89	0.57	0.81	2.22	9008	1208	6	0	0	0	0	logfile
✔	7YiD	33855	2025-05-21	2022-07-16	3.4	3.71	3.50	3.7	0.003	0.56	0.0	0.04	13.96	0.00	2.216	7.32	0.00	6.6	93.1	0.3	-0.75	0.65	0.81	3.12	3.7	0.003	0.53	0.0	0.04	15.50	0.00	2.505	5.38	1.18	6.8	92.9	0.3	-0.23	1.23	0.64	0.84	2.58	21326	2640	8	0	6	8	0	logfile

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