Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YiE	33856	2025-05-21	2022-07-16	3.4	3.73	3.50	3.7	0.003	0.55	0.0	0.04	14.09	0.00	2.239	6.57	0.00	6.8	92.7	0.5	-0.45	0.66	0.76	2.38	3.7	0.003	0.53	0.0	0.04	15.79	0.00	2.488	5.07	2.06	7.3	92.4	0.3	0.25	0.37	0.66	0.84	2.06	21326	2640	8	0	6	8	0	logfile
✔	7YiD	33855	2025-05-21	2022-07-16	3.4	3.71	3.50	3.7	0.003	0.56	0.0	0.04	13.96	0.00	2.216	7.32	0.00	6.6	93.1	0.3	-0.75	0.65	0.81	3.12	3.7	0.003	0.53	0.0	0.04	15.50	0.00	2.505	5.38	1.18	6.8	92.9	0.3	-0.23	1.23	0.64	0.84	2.58	21326	2640	8	0	6	8	0	logfile
✔	8DPM	27638	2025-05-21	2022-07-15	3.0	3.51	2.98	3.3	0.002	0.58	0.0	0.04	10.75	0.00	2.221	6.59	0.62	2.7	97.3	0.0	0.12	0.81	0.80	3.81	3.2	0.004	0.74	0.0	0.04	14.29	0.00	2.394	8.63	2.46	3.4	96.6	0.0	-0.20	1.26	0.84	0.85	3.56	16992	2169	21	0	21	0	0	logfile
✔	8DPH	27635	2025-05-11	2022-07-15	3.2	2.17	3.17	2.0	0.005	0.56	0.0	0.04	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.60	0.0	0.04	13.84	0.00	2.540	4.45	2.44	2.7	97.3	0.0	1.60	1.05	0.78	0.77	2.39	8182	1093	6	0	3	0	0	logfile
✔	7Yi9	33854	2025-05-10	2022-07-15	2.6	2.91	2.69	2.9	0.004	0.65	0.0	0.40	14.61	0.00	2.115	9.72	0.00	5.0	95.0	0.0	-0.81	0.63	0.75	3.34	2.9	0.004	0.62	0.0	0.04	17.72	0.00	2.153	8.01	2.77	4.5	95.5	0.0	-0.48	1.96	0.64	0.78	3.11	5226	634	5	0	1	0	0	logfile
✔	7Yi8	33853	2025-05-10	2022-07-15	2.7	2.97	2.76	2.9	0.003	0.61	0.0	0.04	14.73	0.00	2.179	9.92	0.00	4.0	96.0	0.0	-0.52	0.69	0.74	2.24	2.9	0.002	0.56	0.0	0.04	17.79	0.00	2.526	7.44	2.60	3.4	96.6	0.0	-0.52	0.96	0.68	0.77	1.90	5225	634	5	0	1	0	0	logfile
✔	8DPG	27634	2025-05-11	2022-07-15	3.6	2.36	3.58	2.2	0.003	0.49	0.0	0.04	9.69	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.003	0.62	0.0	0.04	13.36	0.00	2.525	3.96	1.95	2.3	97.7	0.0	1.60	1.10	0.76	0.73	1.84	8162	1093	6	0	2	0	0	logfile
✔	8DPi	27636	2025-05-11	2022-07-15	3.4	2.28	3.42	2.1	0.009	0.52	0.0	0.06	11.00	0.00	2.211	4.16	0.98	1.3	98.6	0.1	1.79	0.73	0.68	1.99	2.1	0.004	0.66	0.0	0.04	14.31	0.00	2.433	5.86	2.08	3.5	96.5	0.0	1.46	0.60	0.75	0.73	2.06	8150	1093	6	0	2	0	0	logfile
✔	8DoU	27623	2025-05-15	2022-07-14	3.54	3.80	3.52	3.8	0.003	0.63	0.0	0.04	14.70	0.00	2.233	7.01	0.34	4.7	95.3	0.0	0.61	0.70	0.76	1.40	3.8	0.003	0.67	0.0	0.04	16.57	0.00	2.490	5.92	2.50	5.6	94.4	0.0	-0.17	0.55	0.73	0.80	1.63	10666	1300	6	0	2	0	0	logfile
✔	8DP1	27628	2025-05-24	2022-07-14	3.46	4.08	3.45	3.5	0.014	1.90	9.0	0.12	15.88	0.02	2.519	0.08	1.61	4.4	95.0	0.6	-0.92	0.84	0.83	3.01	3.5	0.003	0.69	0.0	0.04	14.02	0.00	2.444	4.19	0.45	2.5	97.5	0.0	0.30	1.25	0.85	0.86	2.30	25000	3045	33	0	95	0	0	logfile
✔	7Yi3	33850	2025-05-14	2022-07-14	3.3	2.58	3.26	3.1	0.003	0.53	0.0	0.04	16.30	0.01	2.014	7.86	0.16	6.1	93.9	0.0	-0.30	0.73	0.77	2.60	2.5	0.002	0.51	0.0	0.04	16.93	0.00	2.059	6.27	2.12	6.1	93.9	0.0	0.55	0.27	0.73	0.77	2.27	11425	1392	7	0	5	0	0	logfile
✔	7YHS	33837	2025-05-23	2022-07-14	3.37	2.19	3.26	1.9	0.005	0.91	0.0	0.05	20.46	0.01	2.129	6.19	7.08	8.0	92.0	0.1	-4.27	0.70	0.65	1.63	1.8	0.005	0.69	0.0	0.04	20.48	0.00	2.338	8.89	5.42	9.1	90.9	0.0	-1.59	0.42	0.73	0.69	1.56	24596	2949	13	109	0	0	0	logfile
✔	7Yi4	33851	2025-05-24	2022-07-14	3.96	8.09	3.86	2.7	0.004	0.61	0.0	0.04	23.49	0.00	2.041	12.68	0.10	3.9	96.1	0.0	1.12	0.85	0.82	0.23	2.7	0.003	0.62	0.0	0.04	24.05	0.00	2.075	11.95	1.30	3.8	96.2	0.0	1.56	1.61	0.85	0.83	0.23	25351	2359	18	302	5	0	0	logfile
✔	7Yi2	33849	2025-05-14	2022-07-14	3.4	2.75	3.37	2.7	0.003	0.60	0.0	0.04	18.25	0.01	2.062	9.71	0.23	6.9	93.1	0.0	-0.99	0.75	0.77	2.10	2.7	0.006	0.60	0.0	0.04	19.06	0.00	2.074	7.57	2.97	7.0	93.0	0.0	-0.28	0.32	0.75	0.77	2.03	12140	1397	9	33	5	0	0	logfile
✔	8DP5	27630	2025-05-19	2022-07-14	3.1	3.61	3.19	3.5	0.013	1.78	2.0	0.09	12.28	0.02	2.317	0.79	0.00	1.1	98.9	0.0	-0.51	0.80	0.85	4.09	3.5	0.002	0.52	0.0	0.03	14.27	0.00	2.509	2.48	0.22	1.6	98.4	0.0	3.13	2.87	0.71	0.79	2.48	17780	1145	6	0	0	0	8916	logfile
✔	7Yi5	33852	2025-05-24	2022-07-14	3.96	7.42	3.88	2.8	0.006	0.67	0.0	0.04	23.56	0.00	2.006	17.91	0.29	4.5	95.5	0.0	0.33	0.87	0.84	0.30	2.7	0.004	0.62	0.0	0.04	23.82	0.00	2.048	12.23	1.53	4.2	95.8	0.0	1.17	0.47	0.87	0.84	0.11	25389	2364	18	302	5	0	0	logfile
✔	7YHo	33832	2025-05-09	2022-07-14	3.3	3.49	3.34	3.3	0.005	0.78	1.0	0.07	23.57	0.00	2.273	11.12	8.78	4.0	96.0	0.0	0.44	0.74	0.72	1.30	3.3	0.004	0.74	0.0	0.04	23.66	0.00	2.528	13.02	4.39	4.6	95.4	0.0	0.04	0.86	0.75	0.74	1.80	3923	361	4	49	1	0	0	logfile
✔	7Yi1	33848	2025-05-15	2022-07-14	2.8	2.41	2.77	2.6	0.003	0.57	0.0	0.03	26.98	0.00	2.155	7.30	0.37	1.9	98.1	0.0	0.11	0.81	0.84	2.94	2.6	0.004	0.59	0.0	0.04	27.53	0.00	2.152	5.48	2.35	1.8	98.2	0.0	1.71	0.21	0.81	0.86	2.72	13926	967	12	302	0	0	0	logfile
✔	8DoW	27624	2025-05-24	2022-07-14	3.69	4.37	3.72	3.6	0.014	1.96	15.0	0.13	15.27	0.02	2.498	0.14	1.03	7.6	91.0	1.3	-1.25	0.84	0.82	2.02	3.6	0.006	0.82	0.0	0.05	14.54	0.00	2.474	8.87	0.92	6.9	92.8	0.3	-0.61	1.21	0.84	0.84	1.94	25053	3108	31	0	69	0	0	logfile
✔	8AEX	15388	2025-05-10	2022-07-14	2.76	2.87	2.66	2.8	0.009	1.16	0.0	0.06	16.57	0.00	2.313	12.81	3.19	8.5	91.5	0.0	-3.01	0.49	0.85	5.31	2.8	0.009	0.87	0.0	0.06	17.93	0.00	2.390	9.58	4.68	9.4	90.6	0.0	-2.47	0.36	0.49	0.87	4.79	4665	680	10	0	0	0	0	logfile

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