Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Yi0	33845	2025-05-15	2022-07-14	3.2	3.31	3.15	3.3	0.003	0.59	0.0	0.04	15.67	0.00	2.105	8.46	0.93	5.7	94.3	0.0	-0.27	0.62	0.62	1.43	3.3	0.003	0.65	0.0	0.04	17.42	0.00	2.091	6.55	2.46	5.7	94.3	0.0	0.73	2.64	0.68	0.74	1.68	13430	1638	9	0	7	0	0	logfile
✔	7Yi4	33851	2025-05-24	2022-07-14	3.96	8.09	3.86	2.7	0.004	0.61	0.0	0.04	23.49	0.00	2.041	12.68	0.10	3.9	96.1	0.0	1.12	0.85	0.82	0.23	2.7	0.003	0.62	0.0	0.04	24.05	0.00	2.075	11.95	1.30	3.8	96.2	0.0	1.56	1.61	0.85	0.83	0.23	25351	2359	18	302	5	0	0	logfile
✔	7YH7	33822	2025-05-26	2022-07-13	3.3	3.70	3.30	3.4	0.003	0.54	0.0	0.04	13.55	0.00	2.190	4.90	0.03	4.2	95.8	0.0	0.00	0.73	0.69	2.39	3.5	0.004	0.60	0.0	0.04	14.42	0.00	2.511	5.36	0.94	5.2	94.8	0.0	0.04	0.43	0.80	0.88	2.20	28318	3574	20	0	43	0	0	logfile
✔	7YHK	33831	2025-05-16	2022-07-13	3.14	3.38	3.17	3.4	0.007	1.02	0.0	0.06	14.13	0.01	2.022	5.30	0.76	5.0	94.8	0.2	-3.95	0.54	0.74	4.42	3.4	0.003	0.62	0.0	0.04	15.74	0.00	2.487	6.84	1.46	3.6	96.4	0.0	-1.26	0.44	0.71	0.88	4.08	14502	1812	15	0	18	0	0	logfile
✔	8DoK	27596	2025-05-24	2022-07-13	3.2	3.37	3.24	3.4	0.007	1.02	7.0	0.07	17.80	0.01	2.136	12.34	0.71	3.8	96.1	0.2	-0.58	0.65	0.83	3.01	3.4	0.004	0.67	0.0	0.05	14.45	0.00	2.472	7.66	2.06	3.9	96.1	0.0	-0.25	0.90	0.66	0.85	2.54	25844	3091	46	0	122	0	0	logfile
✔	8DNW	27582	2025-05-09	2022-07-12	3.4	3.74	3.38	3.7	0.003	0.51	0.0	0.04	12.46	0.00	1.976	5.57	0.00	1.4	98.6	0.0	2.85	0.58	0.79	1.72	3.7	0.003	0.56	0.0	0.04	14.15	0.00	2.573	5.93	1.15	1.6	98.4	0.0	3.33	1.09	0.56	0.80	1.43	4060	528	3	0	0	0	0	logfile
✔	7YH6	33820	2025-05-09	2022-07-12	3.4	3.90	3.34	3.7	0.005	0.66	0.0	0.05	13.19	0.00	2.161	8.14	0.00	7.1	92.7	0.2	-0.87	0.66	0.86	3.92	3.7	0.003	0.70	0.0	0.04	14.63	0.00	2.533	6.91	1.39	6.6	93.4	0.0	-0.87	0.30	0.68	0.87	2.89	3343	430	4	0	1	0	0	logfile
✔	8DNV	27581	2025-05-09	2022-07-12	3.03	3.41	3.03	3.4	0.004	0.59	0.0	0.04	11.81	0.01	2.276	7.53	0.00	2.5	97.5	0.0	1.82	0.49	0.76	3.80	3.3	0.004	0.55	0.0	0.04	13.94	0.00	2.516	5.76	0.67	2.7	97.3	0.0	2.28	0.36	0.56	0.82	3.05	4157	535	3	0	0	0	0	logfile
✔	8Do2	27588	2025-05-09	2022-07-12	2.95	3.24	2.96	3.2	0.005	0.73	0.0	0.04	12.56	0.00	2.254	7.21	0.22	1.7	98.3	0.0	2.17	0.58	0.80	2.71	3.2	0.003	0.56	0.0	0.04	14.96	0.00	2.617	6.40	1.33	1.3	98.7	0.0	2.81	0.31	0.59	0.83	2.26	4226	541	4	0	1	0	0	logfile
✔	8Do4	27590	2025-05-20	2022-07-12	3.2	3.38	3.21	3.5	0.005	0.81	0.0	0.05	16.40	0.00	2.056	12.09	1.54	3.4	96.6	0.0	-0.40	0.69	0.68	1.37	3.5	0.003	0.65	0.0	0.05	17.07	0.00	2.509	9.01	3.09	3.6	96.4	0.0	-0.30	0.71	0.71	0.71	1.33	20163	2625	6	0	0	0	0	logfile
✔	8AE1	15378	2025-05-21	2022-07-12	3.25	3.42	3.19	3.3	0.002	0.47	0.0	0.04	12.79	0.00	2.165	3.58	0.00	2.7	97.3	0.0	-1.01	0.77	0.87	4.39	3.3	0.003	0.54	0.0	0.04	14.09	0.00	2.252	2.55	1.41	2.9	97.1	0.0	-0.35	0.26	0.77	0.89	3.76	21504	2859	6	0	18	0	0	logfile
✔	8Do6	27593	2025-05-15	2022-07-12	3.1	3.31	3.16	3.3	0.005	0.68	0.0	0.04	18.00	0.00	2.146	16.58	0.62	6.3	93.2	0.4	-1.21	0.69	0.77	1.74	3.2	0.006	0.99	1.0	0.05	19.06	0.01	2.093	17.49	2.73	8.5	91.1	0.4	-1.30	0.41	0.69	0.78	1.68	12980	1450	9	61	0	0	0	logfile
✔	8Do3	27589	2025-05-09	2022-07-12	3.22	3.50	3.22	3.5	0.004	0.62	0.0	0.04	13.22	0.02	2.452	6.81	0.00	2.3	97.7	0.0	2.39	0.54	0.79	2.25	3.5	0.003	0.58	0.0	0.04	14.49	0.00	2.612	7.52	1.56	2.3	97.7	0.0	2.85	1.11	0.54	0.81	1.59	4185	534	4	0	1	0	0	logfile
✔	8ADW	15372	2025-05-10	2022-07-11	2.95	2.93	2.87	3.0	0.009	1.46	0.0	0.07	22.42	0.01	2.469	8.01	23.33	7.7	92.3	0.0	-4.02	0.51	0.80	4.38	2.9	0.007	0.80	0.0	0.05	20.12	0.00	2.518	12.43	3.48	9.5	90.5	0.0	-3.50	1.26	0.51	0.83	4.36	6920	990	10	0	0	0	0	logfile
✔	8ADS	15369	2025-05-10	2022-07-11	3.05	2.91	2.80	3.2	0.004	0.49	0.0	0.06	13.38	0.00	2.218	11.86	0.00	1.4	98.6	0.0	-3.19	0.48	0.79	5.21	3.2	0.008	0.71	0.0	0.06	16.66	0.00	2.597	11.39	4.04	3.8	96.2	0.0	-3.66	0.52	0.49	0.82	6.19	5170	750	10	0	0	0	0	logfile
✔	8DNE	27564	2025-05-13	2022-07-11	3.5	3.77	3.52	3.8	0.004	0.65	0.0	0.04	14.83	0.00	1.785	9.38	0.00	4.9	95.1	0.0	-0.37	0.71	0.78	2.45	3.8	0.003	0.62	0.0	0.04	16.71	0.00	1.929	8.41	2.86	4.5	95.5	0.0	0.37	1.23	0.69	0.77	1.53	10281	1251	6	0	4	0	0	logfile
✔	7YG8	33811	2025-05-11	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.008	0.71	0.0	0.04	24.57	0.00	1.803	17.58	0.00	0.0	0.0	0.0	—	0.39	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	8DNC	27563	2025-05-15	2022-07-11	3.3	3.52	3.33	3.5	0.004	0.65	0.0	0.04	14.47	0.00	1.989	9.65	0.00	6.5	93.5	0.0	-1.00	0.69	0.78	2.10	3.5	0.003	0.64	0.0	0.04	16.42	0.00	1.986	8.54	1.81	4.7	95.3	0.0	-0.48	1.16	0.69	0.81	1.84	10672	1300	6	0	5	0	0	logfile
✔	7YG4	33807	2025-05-11	2022-07-11	3.1	3.38	3.15	3.3	0.003	0.58	0.0	0.04	15.98	0.00	2.147	7.09	0.00	3.3	96.7	0.0	0.41	0.75	0.81	1.84	3.3	0.003	0.61	0.0	0.04	17.28	0.00	2.351	5.64	1.29	3.4	96.6	0.0	1.73	0.32	0.76	0.82	1.23	7510	953	3	0	0	0	0	logfile
✔	7YGN	33817	2025-05-10	2022-07-11	3.0	3.26	3.08	3.3	0.006	0.85	0.0	0.05	15.42	0.01	1.892	3.34	0.00	2.7	97.3	0.0	0.11	0.69	0.77	2.97	3.3	0.003	0.55	0.0	0.04	16.79	0.00	1.975	4.97	1.94	3.0	97.0	0.0	0.77	0.54	0.65	0.80	2.65	6133	739	3	9	2	0	0	logfile

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