Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ADS	15369	2025-05-10	2022-07-11	3.05	2.91	2.80	3.2	0.004	0.49	0.0	0.06	13.38	0.00	2.218	11.86	0.00	1.4	98.6	0.0	-3.19	0.48	0.79	5.21	3.2	0.008	0.71	0.0	0.06	16.66	0.00	2.597	11.39	4.04	3.8	96.2	0.0	-3.66	0.52	0.49	0.82	6.19	5170	750	10	0	0	0	0	logfile
✔	8ADW	15372	2025-05-10	2022-07-11	2.95	2.93	2.87	3.0	0.009	1.46	0.0	0.07	22.42	0.01	2.469	8.01	23.33	7.7	92.3	0.0	-4.02	0.51	0.80	4.38	2.9	0.007	0.80	0.0	0.05	20.12	0.00	2.518	12.43	3.48	9.5	90.5	0.0	-3.50	1.26	0.51	0.83	4.36	6920	990	10	0	0	0	0	logfile
✔	7YG5	33808	2025-05-21	2022-07-11	3.0	3.31	3.14	3.3	0.015	1.10	2.0	0.07	17.21	0.01	2.195	16.07	0.56	10.9	88.8	0.3	-2.73	0.65	0.82	2.84	3.3	0.003	0.67	0.0	0.04	16.28	0.00	2.330	7.74	1.82	6.6	93.3	0.0	-0.28	1.14	0.61	0.81	2.17	20308	2436	8	0	37	0	0	logfile
✔	7YGN	33817	2025-05-10	2022-07-11	3.0	3.26	3.08	3.3	0.006	0.85	0.0	0.05	15.42	0.01	1.892	3.34	0.00	2.7	97.3	0.0	0.11	0.69	0.77	2.97	3.3	0.003	0.55	0.0	0.04	16.79	0.00	1.975	4.97	1.94	3.0	97.0	0.0	0.77	0.54	0.65	0.80	2.65	6133	739	3	9	2	0	0	logfile
✔	8DNE	27564	2025-05-13	2022-07-11	3.5	3.77	3.52	3.8	0.004	0.65	0.0	0.04	14.83	0.00	1.785	9.38	0.00	4.9	95.1	0.0	-0.37	0.71	0.78	2.45	3.8	0.003	0.62	0.0	0.04	16.71	0.00	1.929	8.41	2.86	4.5	95.5	0.0	0.37	1.23	0.69	0.77	1.53	10281	1251	6	0	4	0	0	logfile
✔	7YG4	33807	2025-05-11	2022-07-11	3.1	3.38	3.15	3.3	0.003	0.58	0.0	0.04	15.98	0.00	2.147	7.09	0.00	3.3	96.7	0.0	0.41	0.75	0.81	1.84	3.3	0.003	0.61	0.0	0.04	17.28	0.00	2.351	5.64	1.29	3.4	96.6	0.0	1.73	0.32	0.76	0.82	1.23	7510	953	3	0	0	0	0	logfile
✔	7YG8	33811	2025-05-11	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.008	0.71	0.0	0.04	24.57	0.00	1.803	17.58	0.00	0.0	0.0	0.0	—	0.39	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	8DNF	27565	2025-05-14	2022-07-11	3.38	3.71	3.39	3.9	0.004	0.69	0.0	0.04	15.96	0.01	2.266	4.74	0.79	2.8	97.2	0.0	-0.81	0.56	0.81	1.68	3.9	0.003	0.64	0.0	0.04	16.51	0.00	1.882	3.20	2.69	4.3	95.7	0.0	-0.41	1.07	0.63	0.87	1.69	11812	1496	8	0	12	0	0	logfile
✔	8DNH	27572	2025-05-14	2022-07-11	2.99	3.18	3.04	3.2	0.006	0.88	0.0	0.06	17.00	0.01	2.150	8.51	0.16	3.8	96.2	0.0	0.38	0.58	0.74	1.96	3.1	0.004	0.69	0.0	0.05	18.31	0.01	1.869	5.39	2.53	3.8	96.2	0.0	0.06	1.15	0.68	0.83	2.17	11796	1496	8	0	12	0	0	logfile
✔	8DNP	27576	2025-05-30	2022-07-11	2.69	2.56	2.88	2.7	0.010	1.16	0.0	0.08	12.98	0.00	1.768	10.47	1.31	2.3	97.7	0.0	0.44	0.76	0.82	4.00	2.7	0.003	0.61	0.0	0.04	19.06	0.00	2.028	9.65	3.76	1.7	98.3	0.0	5.52	0.66	0.73	0.83	4.31	33936	4128	48	0	24	0	0	logfile
✔	8DNR	27577	2025-05-13	2022-07-11	2.8	3.02	2.87	3.0	0.003	0.53	0.0	0.05	15.27	0.00	1.992	5.07	1.47	2.4	97.5	0.1	0.42	0.66	0.84	3.88	3.0	0.003	0.51	0.0	0.05	15.47	0.00	2.534	3.32	1.99	2.7	97.3	0.0	0.86	0.22	0.68	0.85	3.77	10191	1314	6	0	12	0	0	logfile
✔	8ADV	15371	2025-05-10	2022-07-11	2.98	2.99	2.80	3.0	0.006	0.64	0.0	0.05	12.65	0.00	2.127	16.36	1.45	9.3	90.7	0.0	-3.72	0.48	0.86	5.35	3.0	0.005	0.64	0.0	0.05	16.84	0.00	2.541	9.34	4.06	7.7	92.3	0.0	-3.50	0.32	0.47	0.87	5.47	6920	990	10	0	0	0	0	logfile
✔	8DN5	27555	2025-05-17	2022-07-10	3.63	3.95	3.73	3.9	0.006	0.74	0.0	0.05	11.89	0.01	1.194	14.52	1.52	6.4	93.4	0.2	-0.87	0.67	0.83	2.14	3.9	0.004	0.68	0.0	0.04	14.58	0.00	2.472	6.87	2.65	5.2	94.7	0.1	-0.16	0.95	0.63	0.83	1.85	14081	1689	13	0	47	0	0	logfile
✔	8DN4	27554	2025-05-16	2022-07-10	4.1	4.45	4.26	4.3	0.004	0.73	0.0	0.05	13.55	0.00	1.353	18.54	0.40	5.8	93.9	0.3	-0.28	0.63	0.81	—	4.3	0.004	0.78	0.0	0.05	13.32	0.00	2.488	14.50	0.00	6.0	93.8	0.2	-0.46	0.52	0.63	0.81	—	13817	1682	10	0	20	0	0	logfile
✔	8DN8	27556	2025-05-15	2022-07-10	3.7	4.03	3.79	4.0	0.004	0.62	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.003	0.67	0.0	0.04	16.08	0.00	2.406	9.17	3.10	5.1	94.9	0.0	-0.17	0.58	0.72	0.82	1.15	10638	1300	6	0	2	0	0	logfile
✔	8DN2	27552	2025-05-17	2022-07-10	3.9	4.27	4.07	4.2	0.009	0.65	0.0	0.05	12.21	0.01	1.224	14.88	2.83	5.9	94.0	0.1	0.00	0.62	0.81	2.07	4.3	0.003	0.79	0.0	0.04	14.84	0.00	2.488	10.84	3.22	4.7	95.3	0.0	0.16	0.99	0.58	0.80	1.59	14102	1696	12	0	40	0	0	logfile
✔	8DN3	27553	2025-05-17	2022-07-10	3.55	3.91	3.65	3.9	0.006	0.57	0.0	0.05	11.89	0.01	2.181	12.00	1.97	3.9	96.0	0.1	0.56	0.61	0.81	2.45	3.9	0.002	0.60	0.0	0.04	13.98	0.00	2.569	6.55	2.56	3.5	96.5	0.0	0.61	0.92	0.61	0.82	2.13	14315	1699	10	0	61	0	0	logfile
✔	8DMY	27549	2025-05-14	2022-07-09	3.07	3.43	3.14	3.4	0.004	0.62	0.0	0.05	18.68	0.00	2.379	4.32	0.63	3.3	96.7	0.0	-1.24	0.57	0.84	2.69	3.4	0.003	0.62	0.0	0.05	17.47	0.00	2.408	2.99	2.77	4.7	95.3	0.0	-0.02	1.02	0.63	0.88	1.86	11796	1494	8	0	8	0	0	logfile
✔	7YG0	33803	2025-05-15	2022-07-09	3.75	4.38	3.85	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	3.9	0.004	0.95	0.0	0.05	16.12	0.00	2.434	23.87	3.15	5.0	95.0	0.1	-0.78	2.17	0.67	0.73	-0.01	13336	1708	2	0	0	0	0	logfile
✔	7YG2	33805	2025-05-22	2022-07-09	3.32	3.64	3.42	3.6	0.003	0.62	0.0	0.05	15.08	0.01	2.196	6.69	0.00	3.5	96.5	0.0	-0.43	0.68	0.68	1.12	3.6	0.003	0.65	0.0	0.05	15.93	0.00	2.360	11.98	2.75	3.7	96.3	0.0	-0.51	0.68	0.72	0.77	1.38	20783	2630	23	0	12	0	0	logfile

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