Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YFX	33800	2025-05-10	2022-07-09	3.4	3.66	3.48	3.6	0.005	0.79	0.0	0.05	16.96	0.01	1.969	7.14	0.45	2.4	97.6	0.0	-0.16	0.64	0.71	1.95	3.6	0.003	0.64	0.0	0.04	17.52	0.00	1.954	8.81	3.71	3.5	96.5	0.0	0.10	1.27	0.66	0.77	1.91	6319	746	4	15	2	0	0	logfile
✔	7YG0	33803	2025-05-15	2022-07-09	3.75	4.38	3.85	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	3.9	0.004	0.95	0.0	0.05	16.12	0.00	2.434	23.87	3.15	5.0	95.0	0.1	-0.78	2.17	0.67	0.73	-0.01	13336	1708	2	0	0	0	0	logfile
✔	7YG1	33804	2025-05-10	2022-07-09	3.77	4.01	3.79	3.9	0.005	1.15	1.0	0.06	14.00	0.01	2.230	42.79	1.33	14.0	86.0	0.0	-3.77	0.65	0.65	0.57	3.9	0.003	0.91	0.0	0.05	16.95	0.00	2.536	18.88	4.72	7.7	92.1	0.1	-1.69	1.44	0.67	0.68	0.34	6208	770	2	0	0	0	0	logfile
✔	8DMo	27545	2025-05-12	2022-07-08	3.9	5.15	3.89	4.1	0.003	0.63	0.0	0.04	14.36	0.00	2.239	9.02	0.00	3.0	96.9	0.1	1.78	0.74	0.67	0.80	4.2	0.003	0.69	0.0	0.04	16.02	0.00	2.552	9.96	0.92	2.6	97.3	0.1	1.97	0.60	0.86	0.87	0.86	8912	1150	2	0	0	0	0	logfile
✔	8DLo	27508	2025-05-24	2022-07-08	2.25	2.89	2.50	2.7	0.005	0.80	0.0	0.06	13.69	0.01	2.276	3.05	0.00	2.6	97.4	0.0	-0.19	0.77	0.82	3.35	2.7	0.004	0.71	1.0	0.05	14.32	0.00	2.372	6.25	0.84	2.8	97.2	0.0	0.13	0.37	0.77	0.83	2.91	25257	3120	24	0	60	0	0	logfile
✔	8DLK	27504	2025-05-10	2022-07-08	3.04	3.80	3.13	3.5	0.005	0.89	0.0	0.06	13.42	0.01	2.319	2.66	0.29	1.9	98.1	0.0	0.00	0.82	0.85	2.78	3.5	0.003	0.57	0.0	0.04	14.90	0.00	2.439	6.64	0.71	2.1	97.9	0.0	1.78	1.16	0.82	0.86	2.36	6554	797	4	0	7	0	0	logfile
✔	8DM2	27524	2025-05-09	2022-07-08	2.91	3.71	2.85	3.6	0.007	1.04	0.0	0.07	13.37	0.01	2.362	4.12	0.44	2.5	97.5	0.0	-0.51	0.57	0.66	2.14	3.6	0.005	0.76	0.0	0.05	16.08	0.00	2.556	7.75	4.00	6.7	93.3	0.0	-0.96	1.72	0.61	0.75	3.70	2104	249	3	0	6	0	0	logfile
✔	8DLZ	27521	2025-05-22	2022-07-08	2.57	3.25	2.76	3.0	0.005	0.86	0.0	0.06	13.17	0.01	2.297	3.31	0.12	2.0	98.0	0.0	-0.13	0.79	0.83	2.96	3.0	0.003	0.59	0.0	0.04	14.13	0.00	2.424	5.64	1.08	1.9	98.1	0.0	0.67	1.16	0.78	0.83	2.89	22974	2842	25	0	57	0	0	logfile
✔	8DLR	27512	2025-05-09	2022-07-08	2.51	3.02	2.49	2.9	0.006	0.83	0.0	0.06	12.71	0.01	2.291	3.79	0.00	2.6	97.4	0.0	-0.80	0.72	0.84	5.48	2.9	0.005	0.63	0.0	0.04	14.40	0.00	2.410	5.05	0.69	4.0	96.0	0.0	-0.28	1.06	0.72	0.85	5.02	4027	505	4	0	6	0	0	logfile
✔	8DM8	27530	2025-05-10	2022-07-08	2.68	3.21	2.71	3.1	0.006	0.90	0.0	0.06	13.50	0.01	2.306	3.39	0.72	1.8	98.2	0.0	-0.72	0.78	0.85	3.05	3.1	0.004	0.65	0.0	0.04	15.64	0.00	2.521	6.40	1.59	2.8	97.2	0.0	1.25	1.22	0.79	0.87	2.95	6479	794	4	0	3	0	0	logfile
✔	8DMB	27533	2025-05-16	2022-07-08	3.1	3.10	3.13	3.1	0.005	0.91	0.0	0.05	23.25	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.55	0.0	0.03	23.49	0.01	1.995	2.25	1.48	1.9	98.1	0.0	0.71	0.56	0.69	0.83	4.43	14225	328	5	275	2	0	5728	logfile
✔	8DLQ	27510	2025-05-10	2022-07-08	2.77	3.49	2.82	3.2	0.006	0.94	0.0	0.06	13.16	0.01	2.296	3.05	0.43	1.8	98.2	0.0	0.35	0.84	0.87	3.52	3.2	0.003	0.57	0.0	0.04	15.02	0.00	2.538	6.25	0.57	1.9	98.1	0.0	1.66	0.64	0.83	0.87	2.57	6552	797	4	0	7	0	0	logfile
✔	7YFC	33785	2025-05-13	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	3.4	0.004	0.59	0.0	0.04	18.01	0.00	2.372	5.16	5.07	3.4	96.6	0.0	0.91	0.92	0.69	0.85	3.02	9882	1262	7	0	2	0	0	logfile
✔	8DMG	27536	2025-05-18	2022-07-08	4.4	5.39	4.50	4.6	0.030	2.34	20.0	0.12	16.93	0.01	0.312	28.72	6.80	6.0	92.3	1.7	-2.43	0.79	0.61	—	4.6	0.005	0.65	0.0	0.04	13.72	0.00	2.170	63.00	0.00	5.2	94.7	0.0	0.95	2.24	0.93	0.84	—	16844	2068	4	0	18	0	202	logfile
✔	8DMX	27548	2025-05-14	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.006	0.69	0.0	0.05	16.05	0.01	1.909	3.00	1.59	4.9	95.1	0.0	-0.83	0.52	0.69	0.91	2.71	11748	1488	8	0	8	0	0	logfile
✔	7YFL	33792	2025-05-20	2022-07-08	3.9	4.15	3.83	4.0	0.005	0.66	0.0	0.04	16.70	0.00	2.260	9.01	0.34	7.9	91.8	0.3	-0.49	0.72	0.77	1.05	4.0	0.003	0.61	0.0	0.04	16.36	0.00	2.585	6.61	3.68	7.1	92.8	0.1	-0.27	1.08	0.71	0.76	1.03	19968	2778	14	0	18	0	0	logfile
✔	8DM3	27525	2025-05-29	2022-07-08	2.37	2.98	2.51	2.6	0.005	0.85	0.0	0.05	12.92	0.01	2.245	4.10	0.24	2.4	97.6	0.0	-0.56	0.78	0.82	2.75	2.6	0.002	0.59	0.0	0.04	14.15	0.00	2.524	6.46	1.47	1.8	98.2	0.0	0.49	0.58	0.78	0.84	2.55	31185	3888	30	0	57	0	0	logfile
✔	8DM1	27523	2025-05-22	2022-07-08	3.04	3.80	3.09	3.5	0.005	0.85	0.0	0.06	13.21	0.01	2.305	3.36	0.54	1.7	98.3	0.0	0.41	0.78	0.75	1.04	3.5	0.003	0.63	0.0	0.04	14.43	0.00	2.438	7.45	1.61	1.8	98.2	0.0	0.81	1.28	0.81	0.83	2.24	22276	2751	24	0	55	0	0	logfile
✔	8ADG	15362	2025-05-22	2022-07-08	3.0	3.31	3.05	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.50	0.0	0.04	15.44	0.00	2.298	2.20	1.11	3.7	96.3	0.0	0.34	0.90	0.60	0.83	3.73	23191	1506	6	0	0	0	11383	logfile
✔	8DLW	27518	2025-05-28	2022-07-08	2.16	3.12	2.26	2.6	0.007	1.07	0.0	0.06	11.95	0.01	2.290	1.95	0.19	2.3	97.7	0.1	0.82	0.87	0.86	4.36	2.6	0.004	0.67	0.0	0.04	12.95	0.00	2.428	5.29	1.06	2.4	97.6	0.0	0.96	2.12	0.88	0.89	4.12	30267	3768	33	0	78	0	0	logfile

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