Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YFG	33789	2025-05-21	2022-07-08	3.6	3.14	3.54	3.5	0.012	1.18	1.0	0.05	17.45	0.01	2.035	10.50	0.22	5.9	93.9	0.2	-0.95	0.77	0.79	2.58	3.5	0.003	0.61	0.0	0.04	16.53	0.00	2.495	6.01	2.72	6.1	93.8	0.1	-0.34	0.35	0.76	0.79	2.17	21215	2620	25	0	48	0	0	logfile
✔	8DM8	27530	2025-05-10	2022-07-08	2.68	3.21	2.71	3.1	0.006	0.90	0.0	0.06	13.50	0.01	2.306	3.39	0.72	1.8	98.2	0.0	-0.72	0.78	0.85	3.05	3.1	0.004	0.65	0.0	0.04	15.64	0.00	2.521	6.40	1.59	2.8	97.2	0.0	1.25	1.22	0.79	0.87	2.95	6479	794	4	0	3	0	0	logfile
✔	8DMB	27533	2025-05-16	2022-07-08	3.1	3.10	3.13	3.1	0.005	0.91	0.0	0.05	23.25	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.55	0.0	0.03	23.49	0.01	1.995	2.25	1.48	1.9	98.1	0.0	0.71	0.56	0.69	0.83	4.43	14225	328	5	275	2	0	5728	logfile
✔	8DLR	27512	2025-05-09	2022-07-08	2.51	3.02	2.49	2.9	0.006	0.83	0.0	0.06	12.71	0.01	2.291	3.79	0.00	2.6	97.4	0.0	-0.80	0.72	0.84	5.48	2.9	0.005	0.63	0.0	0.04	14.40	0.00	2.410	5.05	0.69	4.0	96.0	0.0	-0.28	1.06	0.72	0.85	5.02	4027	505	4	0	6	0	0	logfile
✔	8DLK	27504	2025-05-10	2022-07-08	3.04	3.80	3.13	3.5	0.005	0.89	0.0	0.06	13.42	0.01	2.319	2.66	0.29	1.9	98.1	0.0	0.00	0.82	0.85	2.78	3.5	0.003	0.57	0.0	0.04	14.90	0.00	2.439	6.64	0.71	2.1	97.9	0.0	1.78	1.16	0.82	0.86	2.36	6554	797	4	0	7	0	0	logfile
✔	8DM2	27524	2025-05-09	2022-07-08	2.91	3.71	2.85	3.6	0.007	1.04	0.0	0.07	13.37	0.01	2.362	4.12	0.44	2.5	97.5	0.0	-0.51	0.57	0.66	2.14	3.6	0.005	0.76	0.0	0.05	16.08	0.00	2.556	7.75	4.00	6.7	93.3	0.0	-0.96	1.72	0.61	0.75	3.70	2104	249	3	0	6	0	0	logfile
✔	7YFC	33785	2025-05-13	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	3.4	0.004	0.59	0.0	0.04	18.01	0.00	2.372	5.16	5.07	3.4	96.6	0.0	0.91	0.92	0.69	0.85	3.02	9882	1262	7	0	2	0	0	logfile
✔	8DLV	27517	2025-05-10	2022-07-08	3.11	3.78	3.18	3.5	0.006	0.91	0.0	0.06	13.40	0.01	2.311	2.66	0.29	1.5	98.5	0.0	-0.25	0.82	0.85	2.77	3.5	0.003	0.54	0.0	0.04	14.91	0.00	2.526	5.86	1.14	2.4	97.6	0.0	1.81	0.61	0.83	0.87	2.26	6553	797	4	0	7	0	0	logfile
✔	8DMG	27536	2025-05-18	2022-07-08	4.4	5.39	4.50	4.6	0.030	2.34	20.0	0.12	16.93	0.01	0.312	28.72	6.80	6.0	92.3	1.7	-2.43	0.79	0.61	—	4.6	0.005	0.65	0.0	0.04	13.72	0.00	2.170	63.00	0.00	5.2	94.7	0.0	0.95	2.24	0.93	0.84	—	16844	2068	4	0	18	0	202	logfile
✔	8DLi	27502	2025-05-24	2022-07-08	2.56	3.44	2.78	2.9	0.005	0.85	0.0	0.06	12.96	0.01	2.274	3.61	0.07	2.0	98.0	0.0	-0.02	0.83	0.81	2.61	2.9	0.005	0.63	0.0	0.05	13.93	0.00	2.514	5.60	0.66	2.4	97.6	0.0	0.50	1.53	0.83	0.84	2.55	25154	3110	24	0	60	0	0	logfile
✔	8DLX	27519	2025-05-23	2022-07-08	2.45	3.38	2.61	2.7	0.005	0.86	0.0	0.06	13.11	0.01	2.279	3.50	0.08	2.2	97.8	0.0	-0.13	0.83	0.84	2.90	2.7	0.005	0.60	0.0	0.05	13.79	0.00	2.398	5.38	0.57	2.5	97.5	0.0	0.59	1.14	0.84	0.87	2.91	24293	3005	25	0	59	0	0	logfile
✔	8DMX	27548	2025-05-14	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.006	0.69	0.0	0.05	16.05	0.01	1.909	3.00	1.59	4.9	95.1	0.0	-0.83	0.52	0.69	0.91	2.71	11748	1488	8	0	8	0	0	logfile
✔	8DM1	27523	2025-05-22	2022-07-08	3.04	3.80	3.09	3.5	0.005	0.85	0.0	0.06	13.21	0.01	2.305	3.36	0.54	1.7	98.3	0.0	0.41	0.78	0.75	1.04	3.5	0.003	0.63	0.0	0.04	14.43	0.00	2.438	7.45	1.61	1.8	98.2	0.0	0.81	1.28	0.81	0.83	2.24	22276	2751	24	0	55	0	0	logfile
✔	8DLN	27507	2025-05-10	2022-07-08	3.04	3.75	3.10	3.4	0.005	0.89	0.0	0.06	13.35	0.01	2.303	2.81	0.29	1.8	98.2	0.0	-0.21	0.83	0.85	3.19	3.5	0.003	0.62	0.0	0.04	14.72	0.00	2.491	7.35	0.86	2.5	97.5	0.0	1.66	2.31	0.84	0.87	2.80	6553	797	4	0	7	0	0	logfile
✔	8DM3	27525	2025-05-29	2022-07-08	2.37	2.98	2.51	2.6	0.005	0.85	0.0	0.05	12.92	0.01	2.245	4.10	0.24	2.4	97.6	0.0	-0.56	0.78	0.82	2.75	2.6	0.002	0.59	0.0	0.04	14.15	0.00	2.524	6.46	1.47	1.8	98.2	0.0	0.49	0.58	0.78	0.84	2.55	31185	3888	30	0	57	0	0	logfile
✔	8DLT	27515	2025-05-24	2022-07-08	2.4	3.35	2.60	2.8	0.005	0.79	0.0	0.05	12.93	0.01	2.220	2.75	0.00	1.7	98.3	0.0	0.21	0.85	0.84	3.11	2.8	0.003	0.57	0.0	0.04	13.56	0.00	2.366	5.56	0.66	2.2	97.8	0.0	0.72	1.13	0.85	0.86	2.68	25245	3120	24	0	60	0	0	logfile
✔	8ADE	15361	2025-05-10	2022-07-08	2.78	2.65	2.54	2.7	0.012	1.58	0.0	0.11	9.64	0.00	2.213	3.08	0.00	3.4	96.6	0.0	-4.12	0.74	0.76	3.27	3.0	0.004	0.70	0.0	0.05	15.13	0.00	2.617	11.94	1.28	2.9	97.1	0.0	-2.57	0.74	0.77	0.83	4.56	5026	644	7	0	0	0	0	logfile
✔	8DM4	27526	2025-05-09	2022-07-08	2.45	2.88	2.45	2.8	0.006	0.93	0.0	0.06	13.36	0.01	2.259	4.06	0.23	4.1	95.9	0.0	-0.05	0.69	0.81	4.67	2.9	0.004	0.64	0.0	0.05	15.36	0.00	2.414	7.24	2.29	3.1	96.9	0.0	0.31	1.16	0.67	0.82	5.02	4018	497	5	0	6	0	0	logfile
✔	8DLJ	27503	2025-05-26	2022-07-08	2.91	3.82	3.10	3.1	0.005	0.88	0.0	0.06	12.96	0.01	2.282	3.47	0.13	1.7	98.3	0.0	0.38	0.84	0.82	2.35	3.1	0.005	0.67	0.0	0.04	14.22	0.00	2.065	7.96	0.88	2.4	97.6	0.0	0.55	1.19	0.85	0.85	2.40	28498	3508	26	0	64	0	0	logfile
✔	8DLS	27514	2025-05-09	2022-07-08	2.66	3.23	2.65	3.1	0.006	0.98	0.0	0.06	12.29	0.01	2.288	4.45	0.00	4.8	95.2	0.0	-0.59	0.70	0.83	4.60	3.1	0.003	0.68	0.0	0.05	14.71	0.00	2.402	7.75	2.30	3.3	96.7	0.0	0.45	0.43	0.70	0.83	4.24	4017	495	5	0	7	0	0	logfile

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