Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DMJ	27541	2025-05-13	2022-07-08	3.2	2.19	3.22	2.0	0.003	0.64	0.0	0.05	14.82	0.00	2.167	8.41	0.32	3.1	96.9	0.0	-0.37	0.75	0.76	3.13	2.1	0.005	0.67	0.0	0.05	15.85	0.00	2.569	9.04	2.64	3.0	97.0	0.0	-0.63	0.35	0.75	0.77	2.97	11030	1425	7	0	0	0	0	logfile
✔	8ADG	15362	2025-05-22	2022-07-08	3.0	3.31	3.05	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.50	0.0	0.04	15.44	0.00	2.298	2.20	1.11	3.7	96.3	0.0	0.34	0.90	0.60	0.83	3.73	23191	1506	6	0	0	0	11383	logfile
✔	7YFG	33789	2025-05-21	2022-07-08	3.6	3.14	3.54	3.5	0.012	1.18	1.0	0.05	17.45	0.01	2.035	10.50	0.22	5.9	93.9	0.2	-0.95	0.77	0.79	2.58	3.5	0.003	0.61	0.0	0.04	16.53	0.00	2.495	6.01	2.72	6.1	93.8	0.1	-0.34	0.35	0.76	0.79	2.17	21215	2620	25	0	48	0	0	logfile
✔	8DL8	27499	2025-05-10	2022-07-07	3.0	4.08	3.14	3.7	0.003	0.53	0.0	0.04	16.82	0.01	1.612	6.82	3.54	2.5	97.3	0.1	2.02	0.75	0.82	1.99	3.7	0.003	0.76	0.0	0.04	16.79	0.00	2.051	8.00	2.83	2.9	97.0	0.1	2.50	0.56	0.72	0.83	2.19	6208	877	5	0	2	1	0	logfile
✔	8DL7	27498	2025-05-11	2022-07-07	2.7	3.86	2.72	3.3	0.006	0.82	3.0	0.05	16.20	0.00	2.238	7.20	2.90	4.5	95.3	0.2	1.47	0.75	0.84	2.18	3.3	0.003	0.79	2.0	0.04	15.95	0.00	2.481	4.51	1.71	3.6	96.3	0.1	2.44	0.30	0.75	0.83	2.29	6586	909	9	0	4	1	0	logfile
✔	8DLF	27500	2025-05-13	2022-07-07	3.23	3.07	3.22	3.0	0.009	1.29	0.0	0.16	25.90	0.01	2.103	35.48	8.48	8.3	90.2	1.4	-1.74	0.60	0.48	0.90	3.0	0.005	0.78	0.0	0.05	26.23	0.01	2.471	21.91	4.82	10.4	88.8	0.8	-2.11	1.35	0.66	0.57	0.70	7167	631	10	112	0	4	0	logfile
✔	8DL6	27497	2025-05-10	2022-07-07	3.0	4.19	2.96	3.5	0.008	1.09	0.0	0.06	14.53	0.00	2.169	7.37	3.22	6.9	92.1	0.9	-0.55	0.75	0.81	1.88	3.6	0.005	0.76	0.0	0.04	14.97	0.00	2.252	6.36	1.61	6.0	93.6	0.3	1.79	0.46	0.76	0.82	1.38	6171	874	5	0	1	1	0	logfile
✔	7YER	33775	2025-05-16	2022-07-06	3.0	3.14	—	3.2	0.003	0.55	0.0	0.04	13.65	0.00	2.248	4.24	0.13	6.3	93.2	0.4	0.97	0.69	0.82	2.38	3.1	0.003	0.58	0.0	0.04	16.44	0.00	2.499	3.71	1.19	5.6	94.0	0.4	0.98	0.36	0.67	0.83	2.04	14313	1810	6	0	1	0	0	logfile
✔	8DKU	27491	2025-05-15	2022-07-06	3.2	3.52	3.26	3.5	0.004	0.64	0.0	0.05	14.08	0.00	2.201	7.49	0.00	6.0	94.0	0.0	-0.86	0.67	0.79	2.19	3.5	0.003	0.57	0.0	0.04	16.08	0.00	2.457	6.98	1.81	5.7	94.3	0.0	-0.51	1.17	0.66	0.80	1.81	10644	1300	5	0	3	0	0	logfile
✔	8ACT	15353	2025-05-19	2022-07-06	3.6	4.18	3.74	3.6	0.003	0.64	0.0	0.04	14.83	0.00	1.812	16.02	0.00	2.9	97.1	0.0	0.58	0.83	0.70	0.76	3.6	0.004	0.79	0.0	0.04	16.74	0.00	1.916	16.90	1.63	3.9	96.1	0.0	-0.17	2.03	0.83	0.72	0.89	18843	2322	8	0	6	0	0	logfile
✔	8DKX	27493	2025-05-10	2022-07-06	3.0	3.53	3.00	3.4	0.005	0.75	1.0	0.05	13.28	0.00	2.099	8.39	0.62	5.5	94.5	0.0	-3.42	0.62	0.84	4.43	3.4	0.004	0.66	0.0	0.04	15.58	0.00	2.607	5.97	3.11	6.4	93.6	0.0	-0.65	0.90	0.60	0.85	3.87	4370	553	3	0	0	0	0	logfile
✔	8ACP	15352	2025-05-25	2022-07-06	4.5	4.98	4.53	4.4	0.002	0.62	0.0	0.04	16.33	0.00	2.072	16.33	0.08	6.3	93.7	0.0	-1.27	0.88	0.83	—	4.4	0.003	0.65	0.0	0.04	16.57	0.00	1.930	14.41	0.04	7.1	92.9	0.0	-1.12	0.36	0.88	0.84	—	26737	3141	9	104	3	0	0	logfile
✔	7YET	33777	2025-05-14	2022-07-06	3.3	3.55	—	3.5	0.004	0.61	0.0	0.04	14.41	0.01	2.204	7.29	0.23	5.9	93.7	0.4	1.31	0.70	0.81	2.52	3.5	0.004	0.91	2.0	0.05	15.88	0.01	2.352	6.40	1.45	7.0	92.5	0.5	1.44	1.50	0.71	0.83	2.19	11862	1493	6	0	1	0	0	logfile
✔	8DKW	27492	2025-05-10	2022-07-06	3.09	3.64	3.05	3.6	0.006	0.71	1.0	0.06	13.84	0.00	2.097	8.61	0.41	6.2	93.8	0.0	-2.92	0.60	0.83	3.25	3.6	0.004	0.60	0.0	0.04	15.57	0.00	2.619	6.09	2.49	5.7	94.3	0.0	-0.21	0.35	0.57	0.84	2.64	4370	553	3	0	0	0	0	logfile
✔	7YES	33776	2025-05-16	2022-07-06	3.4	3.49	—	3.4	0.002	0.53	0.0	0.04	14.11	0.00	2.209	4.52	0.18	6.8	92.6	0.6	0.91	0.80	0.86	2.46	3.4	0.002	0.55	0.0	0.04	15.77	0.00	2.522	3.52	1.36	6.5	92.9	0.6	1.06	0.88	0.81	0.87	2.43	14679	1863	6	0	1	0	0	logfile
✔	8DL0	27494	2025-05-19	2022-07-06	4.1	4.31	4.14	4.1	0.003	0.67	0.0	0.05	13.22	0.00	2.168	13.34	0.00	4.1	95.9	0.0	0.25	0.73	0.75	—	4.1	0.005	0.70	0.0	0.05	13.74	0.00	2.307	15.05	0.00	5.3	94.7	0.0	-0.05	1.62	0.73	0.77	—	10377	1268	4	0	0	0	0	logfile
✔	8ACB	15345	2025-05-09	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.004	0.64	0.0	0.04	18.06	0.00	2.574	4.88	2.84	9.6	90.4	0.0	-0.58	1.22	0.20	0.83	3.79	1815	220	2	5	0	0	0	logfile
✔	8ACC	15346	2025-05-09	2022-07-05	2.9	3.30	2.79	3.3	0.002	0.70	0.0	0.05	13.62	0.00	2.200	6.25	0.00	11.4	86.5	2.2	-2.46	0.20	0.81	4.38	3.3	0.003	0.61	0.0	0.04	17.16	0.00	2.505	4.76	7.24	11.4	87.8	0.9	-1.60	0.60	0.20	0.83	3.60	1779	231	2	5	0	0	0	logfile
✔	7YEA	33768	2025-05-17	2022-07-05	3.82	4.08	3.84	3.9	0.008	0.84	0.0	0.05	13.81	0.01	2.099	22.75	0.00	7.6	92.4	0.0	-1.40	0.81	0.72	1.21	3.9	0.003	0.79	0.0	0.04	15.85	0.00	2.506	11.56	1.87	4.0	96.0	0.0	0.27	1.01	0.81	0.71	0.59	16016	2034	2	0	0	0	0	logfile
✔	8DKi	27489	2025-05-10	2022-07-05	3.32	3.57	3.28	3.6	0.003	0.64	0.0	0.05	13.79	0.00	2.204	9.78	0.21	4.6	95.4	0.0	-0.62	0.62	0.84	2.61	3.5	0.004	0.64	0.0	0.04	16.01	0.00	2.593	8.98	3.32	7.0	93.0	0.0	-0.20	0.33	0.60	0.86	2.59	4365	552	3	0	0	0	0	logfile

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