Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DK1	27480	2025-05-20	2022-07-01	2.95	3.68	3.03	3.4	0.002	0.42	0.0	0.04	9.97	0.00	2.294	2.83	1.44	3.3	96.7	0.0	2.11	0.85	0.90	2.51	3.4	0.003	0.52	0.0	0.04	12.88	0.00	2.550	3.01	1.15	3.3	96.7	0.0	2.43	0.63	0.85	0.90	2.25	19500	2446	8	0	0	0	0	logfile
✔	7YCG	33738	2025-05-12	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.008	0.69	0.0	0.04	24.55	0.00	1.842	30.51	0.00	0.0	0.0	0.0	—	0.33	0.95	0.89	—	8661	0	3	404	4	0	0	logfile
✔	7YCi	33740	2025-05-11	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.009	0.74	0.0	0.04	24.66	0.01	1.830	25.93	0.00	0.0	0.0	0.0	—	0.96	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	7YCH	33739	2025-05-12	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.008	0.71	0.0	0.04	24.27	0.00	1.777	27.90	0.00	0.0	0.0	0.0	—	0.92	0.94	0.88	—	8661	0	3	404	4	0	0	logfile
✔	8DK3	27482	2025-05-12	2022-07-01	3.28	4.10	3.37	3.6	0.006	0.58	0.0	0.04	16.40	0.00	1.869	3.66	0.85	6.8	93.2	0.0	-0.13	0.85	0.87	2.42	3.6	0.006	0.63	0.0	0.04	17.80	0.00	1.882	2.73	1.34	5.8	94.2	0.0	-0.31	0.39	0.86	0.88	2.31	8905	999	7	52	4	0	0	logfile
✔	8DJM	27461	2025-05-11	2022-07-01	3.23	3.66	3.31	3.6	0.029	1.53	2.0	1.04	32.65	0.00	1.844	8.23	0.82	3.7	96.3	0.0	-2.26	0.49	0.75	3.22	3.7	0.003	1.35	0.0	0.14	21.04	0.00	2.597	5.04	1.51	2.7	97.3	0.0	1.44	0.51	0.60	0.83	2.25	7032	862	7	0	8	0	0	logfile
✔	8DK2	27481	2025-05-23	2022-07-01	4.1	4.81	4.16	4.1	0.002	0.47	0.0	0.04	13.70	0.00	1.988	7.72	2.88	3.7	96.3	0.0	2.05	0.84	0.80	—	4.1	0.005	0.62	0.0	0.04	14.30	0.00	1.977	8.61	0.00	5.1	94.8	0.0	2.10	1.59	0.85	0.81	—	23727	2840	12	52	4	0	0	logfile
✔	7YC8	33736	2025-05-11	2022-07-01	4.14	7.25	4.30	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.970	59.75	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	8DJB	27459	2025-05-18	2022-06-30	3.18	3.51	3.10	3.3	0.005	0.72	0.0	0.06	12.90	0.00	1.908	12.93	6.96	4.2	95.6	0.2	-0.69	0.82	0.81	1.93	3.3	0.003	0.61	0.0	0.05	15.46	0.00	2.443	5.96	1.52	2.9	97.1	0.0	0.95	1.03	0.87	0.90	2.03	16781	2156	9	0	1	0	0	logfile
✔	8DJK	27460	2025-05-11	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.52	1.0	1.03	32.03	0.01	1.327	7.25	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	3.7	0.005	1.37	0.0	0.14	20.98	0.00	2.505	5.27	1.49	4.1	95.9	0.0	1.31	0.51	0.65	0.83	2.35	7091	870	7	0	8	0	0	logfile
✔	7YBL	33725	2025-05-25	2022-06-29	3.6	3.80	3.54	3.7	0.006	0.99	0.0	0.05	16.19	0.01	1.819	13.99	0.60	5.8	94.0	0.2	-0.98	0.59	0.50	0.16	3.7	0.003	0.77	0.0	0.05	14.53	0.00	2.337	9.37	1.73	4.8	95.0	0.1	-0.70	1.64	0.71	0.70	1.25	26819	3234	39	0	112	0	0	logfile
✔	8DiM	27440	2025-05-27	2022-06-29	2.62	3.22	2.95	3.2	0.003	0.56	0.0	0.04	16.98	0.00	2.196	3.84	3.52	2.1	97.6	0.3	0.32	0.71	0.84	3.85	3.2	0.003	0.54	0.0	0.04	15.67	0.00	2.582	2.53	3.02	2.6	97.3	0.1	0.61	0.24	0.68	0.86	3.89	16745	2139	18	0	18	18	0	logfile
✔	7YBK	33724	2025-05-25	2022-06-29	3.9	4.09	4.09	4.0	0.005	0.82	0.0	0.05	15.43	0.01	2.106	10.35	0.32	3.8	96.1	0.1	-1.53	0.74	0.74	1.92	4.0	0.003	0.75	0.0	0.05	15.10	0.00	2.471	8.55	2.09	5.1	94.9	0.0	-1.06	0.81	0.76	0.79	1.61	26491	3225	34	0	91	0	0	logfile
✔	8AA1	15290	2025-05-23	2022-06-29	2.9	3.20	2.77	3.0	0.011	0.57	0.0	0.04	12.37	0.00	2.061	7.22	0.00	1.6	98.4	0.1	1.18	0.86	0.90	3.93	3.0	0.002	0.51	0.0	0.04	12.12	0.00	2.010	3.94	0.69	2.6	97.3	0.1	0.89	1.11	0.84	0.90	4.26	23634	2950	12	0	26	0	0	logfile
✔	8AA4	15293	2025-05-15	2022-06-29	3.1	3.54	2.91	3.2	0.001	0.41	0.0	0.04	7.46	0.00	2.240	3.52	0.00	2.7	97.2	0.1	0.39	0.73	0.88	4.17	3.2	0.004	0.59	0.0	0.04	10.21	0.00	2.563	2.21	0.41	4.2	95.7	0.1	-0.25	0.94	0.73	0.90	4.32	13616	1742	2	0	0	0	0	logfile
✔	8AA3	15292	2025-05-23	2022-06-29	2.7	3.00	2.56	2.8	0.011	0.52	0.0	0.04	14.25	0.00	2.085	7.26	0.00	1.6	98.4	0.0	1.42	0.84	0.89	3.41	2.8	0.004	0.54	0.0	0.04	14.48	0.00	1.964	4.03	0.89	2.3	97.7	0.0	0.84	1.14	0.84	0.91	4.34	23634	2950	12	0	26	0	0	logfile
✔	7YBi	33722	2025-05-25	2022-06-29	4.1	4.25	4.13	4.1	0.004	0.69	0.0	0.05	15.19	0.00	2.038	11.91	0.21	3.8	96.1	0.1	-0.90	0.77	0.78	—	4.1	0.004	0.70	0.0	0.05	12.98	0.00	2.419	10.62	0.04	5.1	94.8	0.0	-0.81	0.41	0.77	0.78	—	26649	3241	35	0	95	0	0	logfile
✔	8A9Y	15288	2025-05-23	2022-06-29	3.5	4.25	3.37	3.6	0.002	0.48	0.0	0.04	9.99	0.00	2.100	8.53	0.04	4.2	95.7	0.1	0.29	0.72	0.85	2.79	3.6	0.002	0.51	0.0	0.04	11.57	0.00	1.974	5.96	1.35	4.3	95.6	0.1	0.11	2.57	0.73	0.85	2.93	23688	2988	8	0	2	0	0	logfile
✔	8AA0	15289	2025-05-30	2022-06-29	3.2	3.48	3.08	3.3	0.010	0.63	0.0	0.05	12.83	0.00	1.978	8.02	0.00	4.4	95.4	0.2	0.31	0.85	0.88	3.66	3.3	0.005	0.57	0.0	0.04	12.64	0.00	1.987	5.43	0.86	4.1	95.8	0.1	0.15	1.16	0.85	0.90	3.58	33058	4134	16	0	26	0	0	logfile
✔	7YBM	33726	2025-05-25	2022-06-29	3.45	3.55	3.44	3.5	0.004	0.85	0.0	0.05	16.15	0.00	2.092	8.18	0.07	4.7	95.1	0.2	-0.61	0.67	0.64	1.90	3.5	0.003	0.74	0.0	0.04	14.03	0.00	2.491	6.33	1.28	4.6	95.3	0.1	-0.68	0.59	0.75	0.77	1.95	27456	3309	39	0	114	0	0	logfile

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