Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AA4	15293	2025-05-15	2022-06-29	3.1	3.54	2.91	3.2	0.001	0.41	0.0	0.04	7.46	0.00	2.240	3.52	0.00	2.7	97.2	0.1	0.39	0.73	0.88	4.17	3.2	0.004	0.59	0.0	0.04	10.21	0.00	2.563	2.21	0.41	4.2	95.7	0.1	-0.25	0.94	0.73	0.90	4.32	13616	1742	2	0	0	0	0	logfile
✔	8DiM	27440	2025-05-27	2022-06-29	2.62	3.22	2.95	3.2	0.003	0.56	0.0	0.04	16.98	0.00	2.196	3.84	3.52	2.1	97.6	0.3	0.32	0.71	0.84	3.85	3.2	0.003	0.54	0.0	0.04	15.67	0.00	2.582	2.53	3.02	2.6	97.3	0.1	0.61	0.24	0.68	0.86	3.89	16745	2139	18	0	18	18	0	logfile
✔	7YBi	33722	2025-05-25	2022-06-29	4.1	4.25	4.13	4.1	0.004	0.69	0.0	0.05	15.19	0.00	2.038	11.91	0.21	3.8	96.1	0.1	-0.90	0.77	0.78	—	4.1	0.004	0.70	0.0	0.05	12.98	0.00	2.419	10.62	0.04	5.1	94.8	0.0	-0.81	0.41	0.77	0.78	—	26649	3241	35	0	95	0	0	logfile
✔	7YBK	33724	2025-05-25	2022-06-29	3.9	4.09	4.09	4.0	0.005	0.82	0.0	0.05	15.43	0.01	2.106	10.35	0.32	3.8	96.1	0.1	-1.53	0.74	0.74	1.92	4.0	0.003	0.75	0.0	0.05	15.10	0.00	2.471	8.55	2.09	5.1	94.9	0.0	-1.06	0.81	0.76	0.79	1.61	26491	3225	34	0	91	0	0	logfile
✔	7YAJ	33714	2025-05-11	2022-06-28	3.16	3.97	3.21	3.6	0.005	0.95	0.0	0.05	18.80	0.01	2.150	9.01	1.66	2.6	97.4	0.0	-1.00	0.60	0.66	0.66	3.7	0.003	0.75	0.0	0.04	18.47	0.00	2.064	13.29	5.46	2.6	97.4	0.0	0.49	0.85	0.61	0.74	0.66	7649	997	3	0	2	0	0	logfile
✔	8Di5	27439	2025-05-09	2022-06-28	3.04	3.55	3.02	3.5	0.006	0.95	0.0	0.06	12.40	0.01	2.300	4.17	0.38	3.3	96.7	0.0	-2.40	0.65	0.80	4.29	3.5	0.003	0.60	0.0	0.04	15.49	0.00	2.432	8.76	1.13	3.6	96.4	0.0	-1.15	0.49	0.64	0.80	3.12	2467	311	3	0	1	0	0	logfile
✔	7YAM	33717	2025-05-10	2022-06-28	3.3	3.46	3.25	3.4	0.013	0.53	0.0	0.04	14.47	0.00	1.756	6.05	0.13	1.6	98.4	0.0	1.95	0.70	0.80	2.17	3.4	0.003	0.53	0.0	0.04	15.99	0.00	1.939	5.46	1.87	2.3	97.7	0.0	2.10	0.44	0.70	0.82	1.98	6672	871	2	0	2	0	0	logfile
✔	7YAE	33710	2025-05-12	2022-06-28	3.37	3.61	3.35	3.6	0.005	0.74	1.0	0.05	14.62	0.00	2.207	12.85	0.92	5.2	94.8	0.0	-0.26	0.58	0.64	1.18	3.6	0.004	0.70	0.0	0.04	15.96	0.00	2.489	8.80	3.16	6.0	94.0	0.0	-0.42	1.06	0.60	0.68	1.13	9031	1146	8	0	4	0	0	logfile
✔	7YAH	33712	2025-05-11	2022-06-28	3.12	3.28	3.14	3.3	0.006	0.84	0.0	0.05	15.97	0.01	2.229	8.86	0.35	2.6	97.4	0.0	0.05	0.63	0.71	1.63	3.3	0.004	0.60	0.0	0.04	16.39	0.00	2.265	8.47	4.26	2.2	97.8	0.0	1.33	0.35	0.64	0.74	1.26	7666	999	3	0	2	0	0	logfile
✔	8A9A	15274	2025-05-15	2022-06-28	3.3	3.59	3.34	3.6	0.003	0.67	0.0	0.04	18.00	0.00	2.116	12.52	0.14	10.5	89.1	0.4	-1.45	0.63	0.58	1.12	3.6	0.004	0.96	1.0	0.05	18.37	0.00	2.115	13.34	2.71	9.5	90.2	0.2	-2.10	0.99	0.70	0.71	1.03	12772	1618	2	0	0	0	0	logfile
✔	7YAT	33719	2025-05-09	2022-06-28	2.2	2.33	1.37	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.003	0.75	0.0	0.05	15.01	0.00	2.685	11.09	1.82	4.9	95.1	0.0	-5.15	0.36	0.64	0.91	7.30	4129	600	45	0	0	25	0	logfile
✔	8A99	15273	2025-05-28	2022-06-28	2.5	2.78	2.73	2.6	0.007	1.25	2.0	0.25	17.40	0.01	2.214	6.33	0.21	5.1	94.9	0.1	-0.13	0.72	0.63	1.18	2.7	0.004	0.79	0.0	0.05	15.67	0.00	2.405	10.79	2.74	4.9	95.1	0.1	-0.63	0.90	0.83	0.82	2.16	30897	3864	20	0	60	0	0	logfile
✔	8A9B	15275	2025-05-10	2022-06-28	4.0	4.28	3.96	4.1	0.004	0.88	0.0	0.05	14.89	0.00	2.113	20.52	0.00	14.8	84.2	1.0	-3.17	0.67	0.58	—	4.1	0.003	0.77	0.0	0.04	17.43	0.00	2.411	17.24	3.14	14.1	85.4	0.5	-2.86	0.58	0.71	0.63	—	6386	809	1	0	0	0	0	logfile
✔	7YAG	33711	2025-05-17	2022-06-28	3.1	3.30	3.17	3.2	0.005	0.81	0.0	0.05	15.72	0.01	2.259	4.52	0.12	2.2	97.8	0.0	0.92	0.63	0.74	1.88	3.2	0.005	0.91	1.0	0.04	15.63	0.00	2.152	7.43	1.54	2.9	97.1	0.0	1.42	0.44	0.60	0.74	1.99	15456	999	3	0	2	0	7790	logfile
✔	7YAi	33713	2025-05-11	2022-06-28	3.14	3.36	3.23	3.3	0.004	0.78	0.0	0.05	16.33	0.00	2.075	7.62	0.35	1.8	98.2	0.0	0.56	0.67	0.75	1.64	3.3	0.003	0.58	0.0	0.04	16.40	0.00	2.310	8.65	3.78	1.5	98.5	0.0	1.55	0.31	0.65	0.77	1.53	7678	1001	3	0	2	0	0	logfile
✔	8DHM	27436	2025-05-14	2022-06-27	2.73	3.45	2.73	3.3	0.006	0.76	0.0	0.04	12.98	0.01	2.002	5.25	0.65	1.7	98.3	0.0	0.74	0.71	0.83	3.56	3.2	0.003	0.55	0.0	0.04	13.99	0.00	2.405	3.01	0.16	1.0	99.0	0.0	3.95	1.18	0.64	0.87	3.09	11698	734	6	0	5	91	5900	logfile
✔	8A93	15267	2025-05-11	2022-06-27	3.05	3.59	3.21	3.4	0.005	0.57	0.0	0.04	18.98	0.00	2.072	4.02	0.64	3.4	96.6	0.0	1.45	0.73	0.86	2.30	3.4	0.003	0.52	0.0	0.03	19.18	0.00	1.943	3.53	1.75	3.4	96.6	0.0	1.92	1.24	0.71	0.87	2.01	7353	828	9	44	4	0	0	logfile
✔	8A94	15269	2025-05-28	2022-06-27	2.4	2.82	2.71	2.7	0.007	1.14	1.0	0.07	14.51	0.01	2.046	6.57	0.66	5.3	94.7	0.1	-0.60	0.67	0.57	0.90	2.7	0.004	0.77	0.0	0.05	15.49	0.00	2.110	11.72	3.04	4.9	95.1	0.0	-0.94	1.45	0.76	0.76	1.93	30862	3864	19	0	57	0	0	logfile
✔	7YAC	33708	2025-05-12	2022-06-27	3.24	2.68	3.20	3.0	0.004	0.59	0.0	0.04	14.30	0.00	2.235	6.23	0.00	3.9	96.1	0.0	0.07	0.65	0.79	2.16	3.1	0.003	0.60	0.0	0.04	16.21	0.00	2.589	5.00	1.85	4.4	95.6	0.0	0.22	1.26	0.66	0.82	1.96	8937	1140	6	0	1	0	0	logfile
✔	7YAD	33709	2025-05-10	2022-06-27	2.66	2.45	2.93	2.2	0.003	0.56	0.0	0.04	12.51	0.00	2.165	5.84	0.00	4.5	95.3	0.1	-1.22	0.71	0.77	3.55	2.2	0.004	0.63	0.0	0.04	14.86	0.00	2.486	4.55	1.39	6.0	93.9	0.1	-1.15	2.15	0.74	0.81	3.03	6728	848	8	0	6	0	0	logfile

• ← previous
• Page 337 of 642
• next →