Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YAC	33708	2025-05-12	2022-06-27	3.24	2.68	3.20	3.0	0.004	0.59	0.0	0.04	14.30	0.00	2.235	6.23	0.00	3.9	96.1	0.0	0.07	0.65	0.79	2.16	3.1	0.003	0.60	0.0	0.04	16.21	0.00	2.589	5.00	1.85	4.4	95.6	0.0	0.22	1.26	0.66	0.82	1.96	8937	1140	6	0	1	0	0	logfile
✔	7Y9X	33695	2025-05-19	2022-06-26	2.49	2.67	2.52	2.7	0.004	0.55	0.0	0.04	11.11	0.00	2.130	5.49	0.31	1.6	98.4	0.0	-0.15	0.70	0.82	4.82	2.7	0.003	0.54	0.0	0.04	15.47	0.00	2.533	5.13	1.35	1.4	98.6	0.0	0.82	1.75	0.68	0.83	4.11	18662	2192	4	38	4	0	0	logfile
✔	7Y9S	33690	2025-05-24	2022-06-26	3.0	2.41	3.07	2.2	0.004	0.67	0.0	0.05	14.21	0.01	2.203	5.75	0.26	4.9	94.8	0.3	-0.13	0.79	0.80	3.10	2.2	0.004	0.69	0.0	0.05	15.80	0.01	2.392	5.05	1.24	5.4	94.5	0.1	-0.17	0.38	0.80	0.82	2.87	25273	3126	22	0	53	0	0	logfile
✔	7Y9T	33691	2025-05-11	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.034	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.004	0.69	0.0	0.04	13.61	0.00	2.608	4.54	1.44	4.9	95.1	0.0	-1.24	0.58	0.67	0.87	3.24	7726	992	4	0	0	0	0	logfile
✔	7Y9Y	33696	2025-05-16	2022-06-26	2.77	3.00	2.81	3.0	0.003	0.61	0.0	0.04	17.98	0.01	2.064	8.75	1.63	1.5	98.5	0.0	0.08	0.70	0.83	3.22	3.0	0.003	0.58	0.0	0.04	18.02	0.00	2.092	5.87	3.12	1.7	98.3	0.0	0.43	0.39	0.64	0.82	3.00	13781	1545	5	61	4	0	0	logfile
✔	7Y9U	33692	2025-05-11	2022-06-26	3.3	3.48	3.22	3.5	0.011	1.06	2.0	0.06	10.08	0.01	2.311	3.19	0.00	5.3	94.7	0.0	-6.23	0.60	0.84	3.22	3.5	0.002	0.62	0.0	0.04	13.81	0.00	2.585	3.90	2.53	2.6	97.4	0.0	-0.61	1.26	0.61	0.85	2.22	7748	988	6	0	2	0	0	logfile
✔	7Y9V	33693	2025-05-11	2022-06-26	3.2	3.43	3.15	3.4	0.013	1.21	6.0	0.06	10.86	0.01	2.057	4.79	0.48	5.1	94.9	0.0	-5.91	0.62	0.83	3.18	3.4	0.003	0.67	0.0	0.04	13.83	0.00	2.578	5.49	3.49	4.2	95.8	0.0	-0.24	1.21	0.63	0.85	2.40	7734	988	8	0	2	4	0	logfile
✔	8DH7	27431	2025-05-11	2022-06-25	2.99	3.24	3.02	3.3	0.003	0.59	0.0	0.05	12.96	0.01	2.117	6.55	0.55	2.8	97.1	0.1	0.73	0.76	0.86	4.31	3.3	0.002	0.54	0.0	0.04	15.61	0.00	2.469	4.85	1.77	2.5	97.4	0.1	0.90	0.34	0.75	0.88	3.24	8274	1052	2	0	0	0	0	logfile
✔	8DH9	27433	2025-05-13	2022-06-25	4.5	3.05	4.87	4.5	0.003	0.65	0.0	0.04	12.03	0.00	2.073	13.96	0.08	2.8	96.9	0.2	0.38	0.65	0.52	—	2.4	0.003	0.79	0.0	0.05	12.72	0.01	2.390	13.28	0.08	4.3	95.6	0.1	-0.61	1.15	0.69	0.60	—	10229	1281	4	0	0	0	0	logfile
✔	8DHA	27434	2025-05-09	2022-06-25	3.8	4.85	4.33	4.8	0.004	0.78	0.0	0.05	17.10	0.01	2.155	15.08	0.49	4.8	95.2	0.0	0.08	0.69	0.73	0.68	4.8	0.003	0.78	0.0	0.05	17.28	0.00	2.562	11.81	3.95	4.6	95.4	0.0	-0.30	0.54	0.69	0.73	0.76	3510	439	5	0	2	0	0	logfile
✔	8A8W	15242	2025-05-25	2022-06-24	4.29	4.56	4.28	4.3	0.003	0.81	0.0	0.05	15.19	0.01	2.183	9.64	0.00	2.8	97.2	0.0	-0.24	0.85	0.80	—	4.3	0.003	0.67	0.0	0.04	14.88	0.00	2.348	13.26	0.00	2.9	97.1	0.0	0.80	0.44	0.85	0.81	—	27187	3398	13	0	35	0	0	logfile
✔	8A8U	15240	2025-05-25	2022-06-24	3.62	3.92	3.72	3.8	0.004	0.83	0.0	0.05	15.49	0.01	2.196	8.04	0.04	3.4	96.6	0.0	-0.39	0.78	0.76	1.16	3.8	0.003	0.72	0.0	0.04	17.05	0.00	2.443	11.32	1.69	2.9	97.1	0.0	0.59	1.01	0.79	0.78	0.85	27129	3391	13	0	33	0	0	logfile
✔	7Y8Y	33686	2025-05-18	2022-06-24	3.0	3.24	3.07	3.2	0.003	0.61	0.0	0.04	18.86	0.00	2.201	6.52	2.51	5.7	94.1	0.2	-0.56	0.76	0.81	2.23	3.2	0.003	0.63	0.0	0.04	19.05	0.00	2.255	5.35	2.68	6.3	93.6	0.1	-0.53	1.13	0.76	0.82	2.21	17023	1971	5	55	4	0	0	logfile
✔	8A8V	15241	2025-05-25	2022-06-24	3.34	3.62	3.37	3.7	0.004	0.79	0.0	0.05	15.57	0.01	2.208	8.03	0.11	3.5	96.5	0.0	-0.58	0.75	0.79	1.81	3.7	0.004	0.66	0.0	0.04	16.80	0.00	2.139	9.44	2.00	3.3	96.7	0.0	0.58	0.40	0.77	0.83	1.54	27164	3396	13	0	33	0	0	logfile
✔	7Y8T	33685	2025-05-18	2022-06-24	2.9	3.12	2.99	3.1	0.004	0.64	1.0	0.04	16.97	0.00	2.218	4.76	1.21	6.0	93.8	0.2	-0.46	0.74	0.85	3.19	3.1	0.003	0.61	0.0	0.04	17.74	0.00	2.457	3.03	2.13	5.8	94.0	0.2	0.01	0.28	0.74	0.85	2.91	16754	1978	4	37	4	0	0	logfile
✔	8DG9	27419	2025-05-17	2022-06-23	2.24	2.40	2.34	2.5	0.004	0.67	0.0	0.05	17.36	0.00	2.116	5.15	0.91	2.7	97.3	0.0	-0.16	0.69	0.83	4.59	2.5	0.003	0.82	0.0	0.05	16.68	0.00	2.279	4.56	2.79	2.5	97.5	0.0	0.38	1.10	0.68	0.84	4.60	15450	2007	12	0	6	0	0	logfile
✔	8A8J	15231	2025-05-10	2022-06-23	3.1	3.35	3.16	3.3	0.005	0.71	0.0	0.04	19.60	0.00	2.009	4.14	0.19	4.4	95.6	0.0	0.13	0.72	0.84	3.07	3.3	0.002	0.50	0.0	0.03	19.73	0.00	2.043	3.73	1.15	2.8	97.2	0.0	1.21	0.26	0.70	0.84	2.85	6159	682	6	38	4	0	0	logfile
✔	8DG8	27418	2025-05-14	2022-06-23	3.62	3.99	3.59	4.0	0.004	0.76	0.0	0.05	14.02	0.01	2.129	16.01	0.15	8.4	91.6	0.1	-2.83	0.52	0.57	1.57	4.0	0.004	0.79	0.0	0.05	16.01	0.00	2.390	11.46	2.53	8.6	91.2	0.1	-2.32	0.57	0.66	0.68	1.41	11617	1494	8	0	9	0	0	logfile
✔	8A8M	15233	2025-05-10	2022-06-23	4.0	5.84	4.31	4.3	0.004	0.89	0.0	0.05	18.82	0.00	2.218	29.09	1.56	8.5	91.4	0.2	-2.63	0.78	0.54	—	4.5	0.004	0.93	0.0	0.05	18.24	0.00	1.946	25.59	3.65	7.8	92.2	0.0	-2.56	0.98	0.83	0.73	—	5244	647	4	0	6	0	0	logfile
✔	8DGJ	27427	2025-05-16	2022-06-23	4.02	4.32	4.06	4.1	0.007	1.24	2.0	0.06	14.25	0.01	2.213	11.07	0.13	7.4	92.3	0.3	-2.71	0.69	0.56	—	4.1	0.004	0.78	0.0	0.04	14.01	0.01	2.371	17.98	0.00	7.8	92.1	0.1	-0.87	0.55	0.68	0.55	—	13574	1689	2	0	0	0	0	logfile

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