Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DG5	27416	2025-05-18	2022-06-23	3.26	3.59	3.38	3.5	0.011	1.42	1.0	0.06	16.30	0.01	2.013	8.22	0.00	8.0	91.7	0.3	-2.73	0.69	0.69	1.25	3.5	0.003	0.69	0.0	0.04	17.20	0.00	2.003	11.13	2.45	6.7	93.1	0.2	-0.83	0.37	0.68	0.70	0.59	16269	1887	5	50	12	0	0	logfile
✔	8DG7	27417	2025-05-17	2022-06-23	3.32	3.61	3.39	3.5	0.007	1.11	1.0	0.06	18.49	0.01	1.980	8.83	1.24	8.7	91.2	0.1	-2.75	0.70	0.70	0.47	3.5	0.003	0.70	0.0	0.04	18.50	0.00	1.910	12.71	3.79	7.1	92.8	0.1	-0.59	0.44	0.71	0.71	0.43	15609	1816	7	47	9	0	0	logfile
✔	8DG9	27419	2025-05-17	2022-06-23	2.24	2.40	2.34	2.5	0.004	0.67	0.0	0.05	17.36	0.00	2.116	5.15	0.91	2.7	97.3	0.0	-0.16	0.69	0.83	4.59	2.5	0.003	0.82	0.0	0.05	16.68	0.00	2.279	4.56	2.79	2.5	97.5	0.0	0.38	1.10	0.68	0.84	4.60	15450	2007	12	0	6	0	0	logfile
✔	8A8J	15231	2025-05-10	2022-06-23	3.1	3.35	3.16	3.3	0.005	0.71	0.0	0.04	19.60	0.00	2.009	4.14	0.19	4.4	95.6	0.0	0.13	0.72	0.84	3.07	3.3	0.002	0.50	0.0	0.03	19.73	0.00	2.043	3.73	1.15	2.8	97.2	0.0	1.21	0.26	0.70	0.84	2.85	6159	682	6	38	4	0	0	logfile
✔	8DFP	27410	2025-05-18	2022-06-22	3.17	3.73	3.15	3.4	0.008	1.15	0.0	0.07	12.92	0.01	2.429	1.23	0.00	1.5	98.5	0.0	-0.93	0.84	0.79	3.52	3.4	0.004	0.61	0.0	0.04	12.01	0.00	2.413	3.02	0.47	2.0	98.0	0.0	0.39	0.55	0.85	0.82	3.42	16124	1118	10	0	10	0	7703	logfile
✔	8DFM	27408	2025-05-17	2022-06-22	3.45	4.16	3.29	3.6	0.008	1.17	0.0	0.07	12.32	0.01	2.387	1.31	0.00	2.0	98.0	0.0	-0.37	0.88	0.83	3.25	3.6	0.003	0.61	0.0	0.04	11.58	0.00	2.384	2.99	0.60	2.4	97.6	0.0	0.63	1.44	0.88	0.84	3.33	15966	1126	10	0	10	0	7566	logfile
✔	7Y7V	33671	2025-05-10	2022-06-22	2.2	2.46	2.25	2.4	0.006	0.78	0.0	0.07	16.08	0.00	2.078	5.73	1.11	3.2	96.8	0.0	0.09	0.71	0.86	4.53	2.4	0.003	0.61	0.0	0.04	15.62	0.00	2.595	4.56	3.32	1.9	98.1	0.0	1.64	0.37	0.69	0.87	3.91	4341	532	2	0	4	58	0	logfile
✔	7Y83	33679	2025-05-18	2022-06-22	2.93	3.17	3.04	3.2	0.004	0.59	0.0	0.04	20.60	0.00	1.923	18.19	5.52	3.5	96.5	0.0	0.07	0.66	0.79	2.46	3.2	0.005	0.67	0.0	0.04	20.30	0.00	1.859	15.02	4.91	3.3	96.7	0.0	0.09	0.29	0.63	0.79	2.61	16300	1861	5	59	5	0	0	logfile
✔	7Y7W	33672	2025-05-10	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.91	0.0	0.08	17.20	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	2.7	0.003	0.57	0.0	0.04	16.63	0.00	2.199	3.41	3.79	1.3	98.7	0.0	1.80	1.15	0.70	0.87	4.06	4310	529	2	0	7	48	0	logfile
✔	8DFV	27415	2025-05-18	2022-06-22	3.06	3.24	3.07	3.2	0.010	1.15	0.0	0.06	16.02	0.01	2.206	10.04	0.00	9.7	90.0	0.3	-2.99	0.68	0.70	2.03	3.2	0.004	0.72	0.0	0.04	17.41	0.00	2.226	12.00	1.82	6.6	93.1	0.3	-0.47	0.65	0.68	0.71	1.03	16710	1917	5	60	10	0	0	logfile
✔	8DFQ	27411	2025-05-16	2022-06-22	3.96	4.53	3.89	4.0	0.007	1.16	0.0	0.06	13.05	0.01	2.270	0.98	0.15	1.8	98.2	0.0	-1.00	0.84	0.79	2.57	4.0	0.004	0.66	0.0	0.04	11.55	0.00	2.382	2.59	0.45	5.6	94.4	0.0	-0.37	0.59	0.85	0.81	1.79	14233	1114	8	0	7	0	6514	logfile
✔	7Y84	33680	2025-05-18	2022-06-22	2.61	2.79	2.65	2.8	0.006	0.70	2.0	0.05	19.40	0.00	1.448	15.72	1.92	1.8	98.2	0.0	-0.44	0.67	0.82	3.54	2.8	0.004	0.58	0.0	0.04	19.59	0.00	1.956	11.80	2.70	2.1	97.9	0.0	0.42	0.34	0.67	0.83	3.26	16081	1894	4	35	5	0	0	logfile
✔	7Y85	33681	2025-05-18	2022-06-22	2.73	3.04	2.86	3.0	0.004	0.58	0.0	0.04	19.99	0.00	1.940	15.62	3.87	2.3	97.7	0.0	-0.05	0.55	0.75	2.97	3.0	0.004	0.59	0.0	0.04	19.98	0.00	1.944	13.73	2.84	2.3	97.7	0.0	0.40	0.34	0.58	0.76	2.95	16502	1884	5	59	5	0	0	logfile
✔	7Y7Z	33675	2025-05-10	2022-06-22	3.2	3.57	3.17	3.5	0.006	0.86	0.0	0.05	15.33	0.01	2.037	11.20	0.00	7.2	92.8	0.0	-0.11	0.59	0.80	1.84	3.5	0.005	1.23	0.0	0.05	16.19	0.00	2.485	5.72	2.88	5.7	94.3	0.0	1.17	0.43	0.58	0.81	1.14	4303	532	2	0	5	0	0	logfile
✔	7Y81	33677	2025-05-14	2022-06-22	2.54	2.77	2.61	2.8	0.006	0.87	0.0	0.06	20.88	0.01	2.034	7.10	2.91	1.2	98.8	0.0	-1.88	0.65	0.80	3.30	2.8	0.003	0.58	0.0	0.04	20.50	0.00	1.920	11.59	3.09	1.3	98.7	0.0	0.16	1.13	0.64	0.81	3.59	11044	1223	4	55	5	0	0	logfile
✔	7Y7J	33667	2025-05-23	2022-06-22	3.8	4.33	3.92	3.8	0.008	1.22	1.0	0.08	12.74	0.01	2.008	12.19	1.09	5.6	93.7	0.8	-1.85	0.83	0.82	2.40	3.8	0.003	0.69	0.0	0.05	13.31	0.00	2.425	5.62	1.57	3.9	96.1	0.0	0.07	1.03	0.83	0.83	2.16	23742	3191	23	0	56	0	0	logfile
✔	7Y7i	33666	2025-05-14	2022-06-22	3.42	3.09	3.31	3.3	0.004	0.57	0.0	0.04	28.76	0.00	2.234	8.91	0.15	1.9	98.1	0.0	2.18	0.64	0.77	1.32	3.3	0.003	0.57	0.0	0.04	28.59	0.00	2.486	7.54	1.46	2.1	97.9	0.0	2.62	0.61	0.68	0.79	1.88	12445	824	12	286	0	0	0	logfile
✔	7Y82	33678	2025-05-15	2022-06-22	2.83	2.38	2.89	3.0	0.003	0.57	0.0	0.04	20.35	0.00	1.887	16.18	4.59	1.8	98.2	0.0	0.77	0.77	0.81	2.77	3.0	0.003	0.57	0.0	0.04	20.19	0.00	1.906	11.76	2.72	2.3	97.7	0.0	0.97	0.32	0.70	0.79	2.71	12278	1341	4	66	5	0	0	logfile
✔	7Y80	33676	2025-05-13	2022-06-22	2.71	2.92	2.77	3.0	0.005	0.92	3.0	0.05	20.87	0.01	2.031	8.90	3.77	1.8	98.2	0.0	-1.49	0.59	0.75	2.46	3.0	0.004	0.62	0.0	0.04	20.72	0.00	1.918	11.18	4.43	1.8	98.2	0.0	0.11	0.38	0.65	0.79	2.84	10572	1218	3	35	5	0	0	logfile
✔	8DFo	27409	2025-05-23	2022-06-22	3.1	3.40	3.28	7.2	0.022	1.64	93.0	0.16	18.53	0.01	1.724	6.88	0.57	4.8	95.2	0.0	-0.44	0.27	0.07	0.22	3.4	0.003	0.76	0.0	0.05	18.25	0.01	2.337	13.71	2.05	4.6	95.4	0.0	-0.61	1.89	0.45	0.39	0.63	23861	2912	13	45	0	0	0	logfile

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