Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y71	33650	2025-05-25	2022-06-21	3.12	3.37	3.22	3.4	0.003	0.62	1.0	0.05	15.55	0.00	1.894	7.57	0.17	4.6	95.3	0.1	-0.81	0.67	0.74	2.12	3.4	0.004	0.88	2.0	0.05	16.25	0.00	1.952	5.16	3.66	4.3	95.7	0.0	-0.73	0.45	0.69	0.82	1.99	27075	3428	15	0	28	0	0	logfile
✔	8DEJ	27393	2025-05-25	2022-06-20	2.86	3.09	2.91	3.0	0.004	0.73	0.0	0.05	17.95	0.00	1.829	4.19	0.36	4.0	96.0	0.0	-0.19	0.70	0.70	3.05	3.0	0.004	0.69	0.0	0.05	19.49	0.01	2.475	3.01	2.05	3.9	96.1	0.0	-0.32	0.67	0.79	0.84	3.09	26197	2975	14	135	0	0	0	logfile
✔	8DE7	27386	2025-05-10	2022-06-20	3.27	4.01	3.23	3.8	0.006	1.06	0.0	0.06	16.51	0.01	2.304	8.39	0.90	2.1	97.9	0.0	4.08	0.61	0.78	1.97	3.8	0.004	0.97	0.0	0.05	17.02	0.00	2.474	14.30	3.82	2.7	97.3	0.0	2.09	0.93	0.56	0.75	1.24	4168	526	4	0	4	0	0	logfile
✔	8DE6	27385	2025-05-15	2022-06-20	3.2	3.41	3.23	3.4	0.010	0.93	0.0	0.06	14.68	0.01	2.169	4.54	2.53	4.0	96.0	0.0	-0.86	0.70	0.82	3.02	3.4	0.003	0.55	0.0	0.04	14.65	0.00	2.237	3.31	3.48	3.6	96.4	0.0	-0.76	0.56	0.72	0.85	2.94	13243	1659	10	0	12	0	0	logfile
✔	8DE9	27388	2025-05-10	2022-06-20	3.4	4.08	3.50	3.9	0.005	1.12	0.0	0.06	14.38	0.01	2.309	8.02	0.23	3.3	96.7	0.0	2.27	0.60	0.77	1.86	3.9	0.005	1.08	0.0	0.05	16.96	0.00	2.291	13.88	2.52	3.5	96.5	0.0	1.73	2.04	0.59	0.80	1.77	4115	517	3	0	4	0	0	logfile
✔	7Y6G	33640	2025-05-28	2022-06-20	3.6	4.77	3.59	3.7	0.009	0.62	0.0	0.03	15.05	0.00	1.807	9.87	0.00	1.7	98.3	0.0	4.11	0.69	0.59	0.30	3.7	0.007	0.66	0.0	0.03	16.82	0.00	1.896	6.89	0.63	1.9	98.1	0.0	4.39	0.67	0.91	0.90	1.71	31427	3772	48	0	59	0	0	logfile
✔	7Y6K	33642	2025-05-10	2022-06-20	3.34	3.42	3.31	3.4	0.004	0.65	0.0	0.04	14.23	0.01	2.222	15.89	0.57	4.9	95.1	0.0	-1.02	0.70	0.79	2.98	3.4	0.004	0.63	0.0	0.04	15.68	0.00	2.387	12.76	3.71	4.3	95.7	0.0	-0.80	1.83	0.70	0.82	2.89	6363	834	5	0	1	0	0	logfile
✔	8A7D	15220	2025-05-13	2022-06-20	3.06	3.45	3.18	3.4	0.004	0.78	0.0	0.05	14.79	0.01	2.115	7.59	0.50	5.3	94.2	0.5	-0.22	0.64	0.77	2.66	3.4	0.003	0.61	0.0	0.04	15.72	0.00	2.232	6.49	2.77	4.4	95.3	0.2	0.20	0.48	0.59	0.75	2.36	10771	1361	5	0	17	0	0	logfile
✔	7Y6F	33639	2025-05-28	2022-06-20	2.7	2.68	2.67	2.8	0.009	0.62	0.0	0.03	15.05	0.00	1.807	9.87	0.00	1.7	98.3	0.0	4.11	0.71	0.83	1.79	2.8	0.007	0.67	0.0	0.03	18.54	0.00	2.121	3.61	0.63	0.4	99.6	0.0	4.78	0.30	0.72	0.85	1.46	31427	3772	48	0	59	0	0	logfile
✔	8DDW	27344	2025-05-25	2022-06-19	4.7	4.19	4.62	4.0	0.003	0.53	0.0	0.04	14.47	0.00	2.179	11.42	8.35	5.4	94.5	0.1	0.15	0.72	0.61	—	4.0	0.003	0.74	0.0	0.04	13.73	0.00	2.314	14.25	0.00	5.6	94.4	0.0	-0.27	1.69	0.78	0.74	—	25869	3198	10	0	68	0	0	logfile
✔	8DE3	27383	2025-05-10	2022-06-19	3.3	3.58	3.28	3.6	0.008	0.69	0.0	0.05	17.06	0.00	2.178	8.58	0.16	3.0	97.0	0.0	0.95	0.59	0.72	1.11	3.6	0.003	0.56	0.0	0.04	16.57	0.00	2.242	8.26	4.50	3.7	96.3	0.0	0.71	0.37	0.59	0.76	1.03	6199	767	5	0	9	0	0	logfile
✔	8DDY	27382	2025-05-11	2022-06-19	2.89	2.51	2.86	2.8	0.016	1.75	0.0	0.07	16.38	0.01	2.247	4.49	3.82	4.8	95.2	0.0	-2.48	0.54	0.84	3.00	2.8	0.003	0.68	0.0	0.04	17.77	0.00	2.598	8.13	1.78	2.8	97.2	0.0	2.16	0.45	0.54	0.85	2.41	7968	954	18	0	9	330	0	logfile
✔	8DE4	27384	2025-05-10	2022-06-19	2.9	3.20	2.91	3.3	0.009	0.79	0.0	0.23	18.02	0.01	2.096	10.13	4.35	3.0	97.0	0.0	0.28	0.50	0.66	1.62	3.3	0.003	0.60	0.0	0.04	16.52	0.00	2.364	9.89	5.59	6.3	93.7	0.0	-0.29	0.88	0.53	0.70	2.13	6188	767	5	0	9	0	0	logfile
✔	7Y63	33632	2025-05-13	2022-06-18	3.16	3.52	3.24	3.4	0.006	0.74	0.0	0.05	18.69	0.01	2.214	10.48	0.00	6.0	94.0	0.0	-2.24	0.69	0.82	2.54	3.4	0.003	0.64	0.0	0.04	16.02	0.00	2.524	6.06	1.70	4.7	95.3	0.0	-0.21	1.22	0.67	0.83	2.44	9924	1238	8	0	16	0	0	logfile
✔	7Y68	33637	2025-05-13	2022-06-18	2.87	3.37	3.02	3.3	0.005	0.73	0.0	0.05	22.41	0.01	2.213	11.36	0.09	5.3	94.7	0.0	-1.61	0.68	0.82	3.50	3.3	0.003	0.63	0.0	0.04	15.91	0.00	2.511	7.29	1.52	5.4	94.6	0.0	0.12	1.19	0.64	0.81	2.83	10264	1300	8	0	18	0	0	logfile
✔	7Y65	33634	2025-05-13	2022-06-18	3.2	3.41	3.19	3.4	0.003	0.59	0.0	0.15	14.43	0.01	2.183	8.62	0.85	3.2	96.7	0.1	0.35	0.61	0.70	1.73	3.4	0.002	0.59	0.0	0.04	16.00	0.00	2.516	6.26	1.48	2.1	97.9	0.0	0.63	0.55	0.65	0.76	1.69	8721	1109	7	0	1	0	0	logfile
✔	7Y60	33630	2025-05-15	2022-06-18	3.8	5.07	3.89	3.8	0.004	0.67	0.0	0.04	28.44	0.00	2.200	17.05	1.30	4.0	96.0	0.0	-0.08	0.81	0.68	0.94	3.9	0.006	0.81	0.0	0.04	29.49	0.01	1.974	23.53	4.28	2.9	97.1	0.0	0.15	1.32	0.91	0.86	1.13	11378	1004	12	216	0	0	0	logfile
✔	8DDQ	27338	2025-05-29	2022-06-18	2.7	2.93	2.76	2.9	0.015	0.96	0.0	0.07	12.33	0.00	2.231	4.92	1.61	3.4	96.6	0.0	0.95	0.77	0.85	3.13	2.9	0.003	0.59	0.0	0.04	14.51	0.00	2.368	4.86	1.49	3.3	96.7	0.0	1.38	0.39	0.73	0.86	2.66	31842	3848	12	0	78	0	0	logfile
✔	7Y64	33633	2025-05-13	2022-06-18	2.9	2.25	2.85	2.1	0.002	0.58	0.0	0.04	12.47	0.00	2.139	5.05	0.19	2.5	97.5	0.0	0.58	0.76	0.77	3.26	2.1	0.006	0.67	0.0	0.05	15.62	0.00	2.479	3.16	2.70	4.2	95.8	0.0	0.60	0.39	0.79	0.82	3.10	9520	1218	6	0	0	0	0	logfile
✔	7Y69	33638	2025-05-13	2022-06-18	3.21	3.59	3.28	3.5	0.011	0.88	0.0	0.06	21.16	0.01	2.196	16.09	0.00	9.2	90.8	0.0	-2.24	0.68	0.81	3.25	3.5	0.005	0.71	0.0	0.04	16.03	0.00	2.500	7.14	1.71	5.6	94.4	0.0	-0.11	0.41	0.67	0.81	3.02	10090	1274	8	0	16	0	0	logfile

• ← previous
• Page 341 of 642
• next →