Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y63	33632	2025-05-13	2022-06-18	3.16	3.52	3.24	3.4	0.006	0.74	0.0	0.05	18.69	0.01	2.214	10.48	0.00	6.0	94.0	0.0	-2.24	0.69	0.82	2.54	3.4	0.003	0.64	0.0	0.04	16.02	0.00	2.524	6.06	1.70	4.7	95.3	0.0	-0.21	1.22	0.67	0.83	2.44	9924	1238	8	0	16	0	0	logfile
✔	8DDR	27339	2025-05-29	2022-06-18	3.2	2.96	3.17	3.2	0.015	0.94	0.0	0.07	11.80	0.00	2.251	5.05	1.77	3.3	96.7	0.0	1.33	0.82	0.82	2.55	3.2	0.003	0.56	0.0	0.04	13.47	0.00	2.577	3.66	1.66	4.1	95.9	0.0	1.57	0.38	0.85	0.86	2.15	32074	3872	12	0	78	0	0	logfile
✔	7Y66	33635	2025-05-13	2022-06-18	2.9	2.32	2.83	2.1	0.002	0.59	0.0	0.04	12.30	0.00	2.144	6.52	0.00	2.3	97.7	0.0	0.09	0.77	0.77	2.22	2.1	0.003	0.61	0.0	0.04	15.70	0.00	2.495	4.38	2.79	3.7	96.3	0.0	0.78	0.41	0.80	0.81	2.35	8917	1139	7	0	2	0	0	logfile
✔	7Y65	33634	2025-05-13	2022-06-18	3.2	3.41	3.19	3.4	0.003	0.59	0.0	0.15	14.43	0.01	2.183	8.62	0.85	3.2	96.7	0.1	0.35	0.61	0.70	1.73	3.4	0.002	0.59	0.0	0.04	16.00	0.00	2.516	6.26	1.48	2.1	97.9	0.0	0.63	0.55	0.65	0.76	1.69	8721	1109	7	0	1	0	0	logfile
✔	7Y68	33637	2025-05-13	2022-06-18	2.87	3.37	3.02	3.3	0.005	0.73	0.0	0.05	22.41	0.01	2.213	11.36	0.09	5.3	94.7	0.0	-1.61	0.68	0.82	3.50	3.3	0.003	0.63	0.0	0.04	15.91	0.00	2.511	7.29	1.52	5.4	94.6	0.0	0.12	1.19	0.64	0.81	2.83	10264	1300	8	0	18	0	0	logfile
✔	8DD8	27336	2025-05-13	2022-06-17	3.4	3.50	3.43	3.4	0.003	0.60	0.0	0.04	15.62	0.00	2.211	7.34	0.00	4.0	95.9	0.1	-0.65	0.81	0.81	2.33	3.4	0.003	0.54	0.0	0.04	16.80	0.00	2.539	8.15	0.60	4.0	96.0	0.0	0.36	1.22	0.83	0.84	1.94	10492	1272	2	0	0	0	0	logfile
✔	8DD3	27333	2025-05-18	2022-06-17	2.9	2.70	2.96	3.1	0.006	0.72	0.0	0.05	14.77	0.00	2.021	6.29	0.00	3.7	96.3	0.0	0.77	0.77	0.85	4.03	3.1	0.003	0.64	0.0	0.04	15.16	0.00	2.392	5.36	2.12	2.4	97.6	0.0	1.27	1.18	0.76	0.86	3.45	17459	2121	17	0	28	0	0	logfile
✔	7Y5N	33621	2025-05-15	2022-06-17	3.45	3.26	3.37	3.3	0.005	0.70	0.0	0.05	14.10	0.01	2.249	4.70	5.43	5.5	94.5	0.0	-1.51	0.77	0.79	2.83	3.3	0.007	0.75	0.0	0.05	14.90	0.00	2.133	6.43	3.06	6.1	93.9	0.0	-1.01	0.56	0.79	0.83	2.50	13034	1639	6	0	20	0	0	logfile
✔	7Y5H	33620	2025-05-10	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.62	0.0	0.04	15.49	0.00	2.034	5.44	2.65	1.7	98.3	0.0	1.46	1.09	0.66	0.81	1.51	4704	600	4	0	4	0	0	logfile
✔	8DD7	27335	2025-05-13	2022-06-17	3.3	3.57	3.30	3.4	0.005	0.94	0.0	0.05	17.63	0.01	2.272	11.26	0.44	6.7	93.3	0.0	-2.46	0.82	0.77	1.51	3.4	0.003	0.68	0.0	0.04	17.75	0.00	2.588	10.83	2.88	5.6	94.4	0.0	0.11	0.58	0.84	0.83	1.28	10370	1275	3	0	1	0	0	logfile
✔	8DCX	27330	2025-05-13	2022-06-17	2.8	3.32	3.33	3.4	0.003	0.58	0.0	0.04	14.71	0.00	2.195	13.47	0.00	5.4	94.6	0.1	-0.04	0.48	0.60	0.77	3.4	0.003	0.70	0.0	0.04	16.99	0.00	2.264	11.96	1.86	4.7	95.2	0.1	-0.06	0.45	0.45	0.60	0.69	9627	1166	2	0	0	0	0	logfile
✔	7Y5W	33627	2025-05-12	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.56	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.007	0.87	0.0	0.04	29.06	0.01	2.018	22.89	5.06	2.5	97.5	0.0	1.44	0.94	0.90	0.86	0.98	8811	579	10	202	0	0	0	logfile
✔	7Y5U	33625	2025-05-16	2022-06-17	3.8	4.49	3.82	4.2	0.002	0.62	0.0	0.04	12.27	0.00	2.212	12.78	0.11	4.0	96.0	0.0	-0.20	0.80	0.69	1.18	4.2	0.004	0.75	0.0	0.05	14.82	0.00	2.287	15.26	1.82	4.2	95.8	0.0	-0.19	1.20	0.84	0.78	1.31	8865	1139	5	0	0	0	0	logfile
✔	7Y5Q	33622	2025-05-15	2022-06-17	3.8	3.59	3.74	3.8	0.005	0.68	0.0	0.05	13.44	0.01	2.314	4.83	6.70	5.6	94.4	0.0	-2.13	0.74	0.77	2.61	3.8	0.003	0.62	0.0	0.04	15.16	0.00	2.453	7.00	3.91	4.6	95.4	0.0	-1.19	0.42	0.73	0.76	2.48	12762	1634	4	0	1	0	0	logfile
✔	7Y5G	33619	2025-05-10	2022-06-17	3.85	4.19	3.81	4.1	0.002	0.44	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.003	0.57	0.0	0.04	15.22	0.00	2.042	3.75	3.02	0.7	99.3	0.0	1.37	0.63	0.66	0.76	-0.21	4736	604	4	0	6	0	0	logfile
✔	7Y5S	33623	2025-05-14	2022-06-17	3.0	2.29	2.99	2.9	0.003	0.63	0.0	0.05	12.39	0.01	2.185	9.34	0.00	7.0	93.0	0.0	-2.10	0.75	0.70	2.12	1.8	0.003	0.70	0.0	0.05	15.63	0.00	2.463	11.08	3.05	8.5	91.5	0.0	-2.14	1.34	0.79	0.78	3.30	11535	1515	3	0	0	0	0	logfile
✔	8DD2	27332	2025-05-18	2022-06-17	2.9	2.71	2.84	2.9	0.005	0.67	0.0	0.05	14.59	0.01	2.041	5.80	0.00	4.5	95.5	0.0	0.66	0.76	0.86	4.28	2.9	0.005	0.68	0.0	0.04	15.70	0.00	2.449	7.09	2.71	3.3	96.7	0.0	0.60	0.41	0.76	0.89	3.91	17459	2121	17	0	28	0	0	logfile
✔	7Y4S	33606	2025-05-10	2022-06-16	3.5	3.72	3.46	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.003	0.63	0.0	0.04	15.15	0.00	2.519	6.57	3.69	1.5	98.5	0.0	2.42	1.59	0.72	0.78	2.57	4940	686	2	0	0	0	0	logfile
✔	7Y58	33612	2025-05-10	2022-06-16	3.8	4.04	3.78	4.1	0.005	0.88	3.0	0.05	18.11	0.02	2.068	14.85	3.38	10.0	90.0	0.0	-1.41	0.54	0.76	1.61	4.0	0.003	0.70	0.0	0.04	18.25	0.00	2.497	7.96	4.57	8.3	91.4	0.3	-0.18	1.02	0.59	0.81	1.52	5606	743	3	0	0	0	0	logfile
✔	8DCK	27326	2025-05-29	2022-06-16	3.4	3.69	3.43	3.8	0.004	0.74	0.0	0.05	14.84	0.00	2.012	7.99	0.06	4.8	95.2	0.0	0.17	0.67	0.76	1.01	3.8	0.003	0.58	0.0	0.04	16.27	0.00	1.986	8.35	2.07	4.2	95.8	0.0	1.43	1.37	0.66	0.78	1.00	32661	4101	18	0	12	0	0	logfile

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