Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y4S	33606	2025-05-10	2022-06-16	3.5	3.72	3.46	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.003	0.63	0.0	0.04	15.15	0.00	2.519	6.57	3.69	1.5	98.5	0.0	2.42	1.59	0.72	0.78	2.57	4940	686	2	0	0	0	0	logfile
✔	7Y58	33612	2025-05-10	2022-06-16	3.8	4.04	3.78	4.1	0.005	0.88	3.0	0.05	18.11	0.02	2.068	14.85	3.38	10.0	90.0	0.0	-1.41	0.54	0.76	1.61	4.0	0.003	0.70	0.0	0.04	18.25	0.00	2.497	7.96	4.57	8.3	91.4	0.3	-0.18	1.02	0.59	0.81	1.52	5606	743	3	0	0	0	0	logfile
✔	8DC2	27320	2025-05-11	2022-06-15	2.99	2.48	3.02	3.1	0.003	0.54	0.0	0.04	19.79	0.00	2.216	11.65	0.16	3.0	97.0	0.0	1.17	0.82	0.83	2.49	3.1	0.003	0.65	0.0	0.04	20.96	0.00	2.462	11.06	1.45	3.0	97.0	0.0	0.95	0.36	0.83	0.84	2.51	7296	673	4	87	0	0	0	logfile
✔	8DBZ	27318	2025-05-11	2022-06-15	4.1	4.31	4.13	4.2	0.003	0.74	0.0	0.05	12.61	0.01	2.101	19.43	0.00	6.5	93.4	0.1	-1.42	0.62	0.62	—	4.2	0.006	0.85	0.0	0.05	13.24	0.01	2.475	19.84	0.00	10.0	89.9	0.1	-1.92	0.59	0.64	0.66	—	7960	1184	9	0	0	0	0	logfile
✔	8A5P	15180	2025-05-16	2022-06-15	3.4	4.19	3.47	3.6	0.011	1.65	3.0	0.10	17.87	0.02	1.816	2.29	0.90	3.3	96.6	0.1	-1.12	0.93	0.90	2.49	3.6	0.003	0.59	0.0	0.04	18.35	0.00	1.933	6.10	1.13	2.7	97.2	0.1	1.84	1.98	0.91	0.87	2.25	13937	1550	10	72	6	0	0	logfile
✔	8A5o	15179	2025-05-15	2022-06-15	3.2	3.27	3.09	3.2	0.016	1.87	2.0	0.10	14.34	0.01	1.981	1.08	0.72	3.8	96.0	0.2	-1.14	0.70	0.80	3.54	3.2	0.003	0.56	0.0	0.04	16.16	0.00	2.212	4.92	0.86	2.0	97.9	0.1	1.47	1.64	0.80	0.85	2.27	12571	1555	8	0	6	0	0	logfile
✔	8DBM	27290	2025-05-26	2022-06-14	2.4	2.48	2.45	2.5	0.011	0.82	0.0	0.06	16.54	0.00	1.884	7.64	2.67	3.3	96.7	0.0	0.14	0.68	0.82	4.58	2.4	0.003	0.54	0.0	0.05	16.80	0.00	1.975	7.51	2.83	3.0	97.0	0.0	0.91	1.15	0.69	0.86	4.10	28716	3708	36	0	48	24	0	logfile
✔	8DBG	27283	2025-05-16	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	17.53	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.003	0.53	0.0	0.05	16.74	0.00	1.983	5.30	1.97	4.0	96.0	0.0	0.89	0.28	0.73	0.91	5.66	14442	1854	18	0	30	12	0	logfile
✔	7Y49	33604	2025-05-11	2022-06-14	3.67	2.35	3.55	2.2	0.003	0.59	0.0	0.04	14.27	0.00	2.317	5.03	0.47	3.8	96.2	0.0	0.44	0.49	0.66	2.02	2.2	0.003	0.56	0.0	0.04	15.84	0.00	2.543	4.19	2.59	3.8	96.2	0.0	1.02	0.92	0.49	0.68	1.45	4169	565	1	0	0	0	0	logfile
✔	8DBD	27280	2025-05-26	2022-06-14	3.2	3.20	3.28	3.2	0.007	0.77	0.0	0.06	15.09	0.00	2.119	5.93	2.74	3.3	96.7	0.0	0.45	0.65	0.77	3.28	3.2	0.003	0.53	0.0	0.05	16.34	0.00	2.514	6.06	2.61	3.6	96.4	0.0	0.56	0.61	0.61	0.84	3.06	28464	3708	24	0	24	0	0	logfile
✔	8DBL	27289	2025-05-16	2022-06-14	2.4	2.55	2.51	2.5	0.011	0.82	0.0	0.06	16.54	0.00	1.885	7.60	2.67	3.3	96.7	0.0	0.14	0.67	0.83	4.21	2.5	0.003	0.51	0.0	0.05	16.11	0.00	1.985	6.61	2.61	2.8	97.2	0.0	0.88	0.40	0.65	0.85	3.77	14358	1854	18	0	24	12	0	logfile
✔	7Y48	33603	2025-05-11	2022-06-14	2.85	2.13	2.79	2.0	0.010	0.84	0.0	0.04	13.51	0.01	2.271	9.22	0.90	2.3	97.7	0.0	1.13	0.51	0.74	2.02	2.0	0.004	0.56	0.0	0.04	15.59	0.00	2.393	2.77	2.03	1.1	98.9	0.0	1.66	0.38	0.53	0.79	2.07	4324	567	2	0	2	0	0	logfile
✔	8DAR	27273	2025-05-28	2022-06-14	3.0	3.42	3.13	3.3	0.004	0.60	0.0	0.04	12.52	0.00	2.011	6.25	1.93	4.7	95.3	0.0	1.67	0.81	0.83	2.41	3.3	0.005	0.77	3.0	0.06	15.27	0.01	2.172	5.47	2.06	5.0	95.0	0.0	1.59	0.65	0.77	0.82	1.89	30157	3827	15	0	14	0	0	logfile
✔	8A5A	15163	2025-05-15	2022-06-14	3.3	3.49	3.26	3.5	0.016	2.08	3.0	0.10	15.44	0.01	1.838	3.05	2.26	4.9	94.7	0.4	-2.22	0.56	0.66	3.59	3.5	0.003	0.59	0.0	0.04	16.27	0.00	1.978	4.99	1.92	2.7	97.2	0.1	1.13	1.24	0.73	0.83	2.35	13191	1629	8	0	6	0	0	logfile
✔	8DBH	27284	2025-05-26	2022-06-14	2.2	2.17	2.27	2.1	0.007	0.69	0.0	0.05	17.53	0.00	1.957	4.90	1.94	3.4	96.6	0.0	0.54	0.72	0.85	5.77	2.1	0.003	0.58	0.0	0.05	16.71	0.00	1.912	4.90	1.46	3.6	96.4	0.0	0.78	0.91	0.74	0.90	5.50	28884	3708	36	0	60	24	0	logfile
✔	8A5D	15165	2025-05-14	2022-06-14	2.9	3.06	2.93	3.0	0.016	1.88	1.0	0.09	14.05	0.01	2.001	0.82	0.23	2.6	97.3	0.1	-0.81	0.72	0.80	4.42	3.0	0.003	0.59	0.0	0.04	16.41	0.00	1.985	4.32	1.46	2.7	97.3	0.0	1.71	0.59	0.80	0.85	3.31	12222	1519	8	0	6	0	0	logfile
✔	7Y45	33601	2025-05-22	2022-06-14	3.3	3.31	3.23	3.3	0.011	1.50	0.0	0.07	20.37	0.01	2.027	13.31	11.22	10.0	89.3	0.7	-3.83	0.72	0.79	2.30	3.3	0.002	0.62	0.0	0.04	16.35	0.00	2.415	5.08	1.41	2.9	97.1	0.0	1.15	1.36	0.75	0.86	1.70	22638	2654	22	0	78	6	0	logfile
✔	8DBo	27293	2025-05-16	2022-06-14	2.5	2.48	2.52	2.5	0.007	1.02	0.0	0.05	18.64	0.00	1.866	10.11	3.37	4.1	95.9	0.0	0.90	0.61	0.74	3.60	2.5	0.003	0.75	0.0	0.05	18.72	0.00	1.901	7.32	3.06	4.5	95.5	0.0	-0.14	0.70	0.68	0.78	3.92	14880	1896	18	0	30	18	0	logfile
✔	7Y42	33600	2025-05-22	2022-06-13	3.45	3.86	3.61	3.8	0.006	0.85	0.0	0.05	14.43	0.01	2.121	11.84	0.59	9.5	90.5	0.0	-3.02	0.77	0.81	2.57	3.8	0.005	0.68	0.0	0.05	15.84	0.00	2.382	7.07	2.22	7.4	92.6	0.0	-1.95	0.41	0.75	0.81	1.90	23058	2904	6	0	30	0	0	logfile
✔	8DAD	27270	2025-05-10	2022-06-13	3.85	4.05	3.88	4.0	0.004	0.85	1.0	0.05	17.77	0.01	2.238	16.32	0.63	5.0	95.0	0.0	-0.96	0.65	0.73	1.59	3.9	0.004	0.78	0.0	0.05	16.30	0.01	2.522	12.96	5.40	5.3	94.7	0.0	-0.86	0.45	0.65	0.74	2.20	3255	424	5	0	4	0	0	logfile

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