Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A4L	15148	2025-05-11	2022-06-12	2.68	2.73	1.77	2.8	0.004	0.65	0.0	0.05	13.43	0.00	2.385	10.11	0.00	0.0	100.0	0.0	-3.33	0.52	0.85	5.71	2.8	0.005	0.62	0.0	0.05	17.41	0.00	2.584	8.47	4.10	3.3	96.7	0.0	-3.64	1.16	0.53	0.87	5.69	7755	1125	15	0	0	0	0	logfile
✔	7Y36	33590	2025-05-12	2022-06-10	2.8	3.76	2.72	3.7	0.007	0.75	0.0	0.05	12.89	0.00	2.152	7.06	0.00	4.2	95.8	0.0	-1.26	0.57	0.54	0.34	3.6	0.004	0.78	0.0	0.04	16.75	0.00	2.399	7.99	2.83	3.6	96.4	0.0	1.19	1.47	0.63	0.77	2.21	9206	1151	7	0	1	0	0	logfile
✔	7Y3E	33592	2025-05-16	2022-06-10	2.8	2.97	2.80	3.1	0.004	0.71	0.0	0.04	14.07	0.00	2.197	12.01	0.00	6.0	94.0	0.0	0.52	0.64	0.80	2.34	3.1	0.003	0.60	0.0	0.04	17.07	0.00	2.577	8.71	3.62	4.5	95.5	0.0	1.21	0.45	0.63	0.82	2.06	14572	1856	4	0	4	0	0	logfile
✔	8D9M	27266	2025-05-17	2022-06-10	4.2	3.57	4.19	3.3	0.024	1.02	0.0	0.05	16.46	0.01	1.684	31.60	0.45	17.2	82.8	0.0	-2.61	0.83	0.80	—	3.2	0.018	0.90	0.0	0.05	16.43	0.00	1.501	14.15	0.00	12.2	87.8	0.0	-2.10	0.60	0.83	0.79	—	15967	1806	14	0	56	0	0	logfile
✔	7Y3G	33594	2025-05-11	2022-06-10	2.77	2.32	2.90	2.1	0.004	0.66	0.0	0.04	16.44	0.01	2.029	7.02	3.04	3.9	96.1	0.0	0.49	0.79	0.81	2.50	2.1	0.003	0.59	0.0	0.04	16.64	0.00	2.178	3.83	3.63	3.5	96.5	0.0	0.86	1.14	0.80	0.82	1.95	7864	1001	5	0	0	0	0	logfile
✔	8A43	15135	2025-05-28	2022-06-10	4.09	3.90	4.09	3.7	0.008	1.01	0.0	0.05	15.37	0.01	2.028	24.41	0.41	15.2	84.6	0.2	-4.94	0.78	0.68	—	3.7	0.004	0.75	0.0	0.05	14.57	0.01	2.387	11.99	0.00	9.1	90.9	0.0	-2.15	0.64	0.77	0.66	—	31109	3914	12	0	0	0	0	logfile
✔	8D9L	27265	2025-05-10	2022-06-10	4.04	5.24	4.17	4.5	0.002	0.44	0.0	0.03	16.63	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.4	0.004	0.62	0.0	0.04	17.67	0.00	2.184	14.96	0.00	3.9	96.1	0.0	0.20	1.47	0.91	0.84	—	5757	553	4	65	1	0	0	logfile
✔	8D9N	27267	2025-05-11	2022-06-10	4.4	4.74	3.59	25.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	25.0	0.003	0.69	0.0	0.04	13.31	0.00	2.441	4.39	0.00	5.2	94.8	0.0	0.53	0.58	0.36	-0.04	—	7186	902	2	0	0	0	0	logfile
✔	8D9D	27258	2025-05-20	2022-06-09	3.59	4.41	3.63	3.9	0.003	0.71	0.0	0.04	15.76	0.01	2.101	7.58	0.19	3.6	96.2	0.3	0.16	0.87	0.79	1.53	4.0	0.006	0.70	0.0	0.04	16.70	0.00	1.165	7.84	0.76	4.1	95.7	0.2	0.69	1.71	0.91	0.86	1.45	19409	2312	10	30	8	0	0	logfile
✔	8D97	27257	2025-05-16	2022-06-09	3.8	3.96	3.72	3.8	0.008	0.97	0.0	0.04	17.28	0.00	2.113	8.76	0.00	5.1	94.9	0.0	-2.43	0.87	0.87	2.06	3.8	0.002	0.51	0.0	0.04	17.80	0.00	2.503	4.89	0.78	3.0	97.0	0.0	-0.05	0.41	0.87	0.86	2.11	13874	1600	3	42	4	0	0	logfile
✔	7Y35	33588	2025-05-12	2022-06-09	2.9	2.79	2.85	3.0	0.009	0.80	0.0	0.05	12.99	0.01	2.217	5.09	0.10	4.0	96.0	0.0	-1.37	0.84	0.82	3.23	3.1	0.004	0.76	0.0	0.04	17.15	0.00	2.494	7.12	2.63	3.3	96.7	0.0	1.16	0.81	0.85	0.85	2.80	9191	1150	7	0	1	0	0	logfile
✔	7Y27	33587	2025-05-11	2022-06-09	3.48	3.96	3.59	3.9	0.012	0.63	0.0	0.06	13.37	0.00	2.204	5.95	0.00	3.7	96.2	0.1	0.16	0.67	0.81	2.45	4.0	0.002	0.58	0.0	0.04	15.01	0.00	2.223	3.77	2.33	3.3	96.7	0.0	0.58	0.95	0.67	0.82	1.89	8184	1137	7	0	1	0	0	logfile
✔	7Y24	33585	2025-05-11	2022-06-09	3.25	3.61	3.34	3.6	0.004	0.68	2.0	0.06	12.93	0.00	2.208	12.97	0.37	3.0	97.0	0.0	0.69	0.61	0.73	1.83	3.5	0.004	0.67	0.0	0.04	15.34	0.00	2.436	10.27	3.33	2.7	97.3	0.0	0.58	0.50	0.63	0.76	1.68	8229	1127	7	0	2	0	0	logfile
✔	7Y26	33586	2025-05-11	2022-06-09	3.3	3.67	3.39	3.7	0.003	0.57	0.0	0.04	12.62	0.00	2.203	4.71	0.00	3.0	97.0	0.0	0.69	0.66	0.80	3.02	3.7	0.002	0.53	0.0	0.04	14.55	0.00	2.529	3.60	1.45	2.1	97.9	0.0	0.87	0.37	0.66	0.80	2.41	8014	1111	7	0	2	0	0	logfile
✔	8D9F	27260	2025-05-18	2022-06-09	2.71	3.74	2.91	3.4	0.010	0.95	0.0	0.06	15.70	0.01	2.015	10.10	0.06	3.3	96.6	0.1	0.50	0.82	0.83	3.13	3.4	0.003	0.65	0.0	0.04	17.23	0.00	2.402	7.06	0.89	2.8	97.2	0.0	1.28	1.16	0.82	0.85	2.77	16163	1912	4	33	4	0	0	logfile
✔	8D9G	27261	2025-05-18	2022-06-09	2.57	2.97	2.74	2.9	0.012	0.99	0.0	0.05	18.99	0.01	2.036	11.14	5.96	7.0	92.8	0.2	-2.52	0.72	0.78	2.47	2.9	0.006	0.65	0.0	0.04	19.35	0.00	2.309	6.56	2.54	4.6	95.4	0.0	0.38	1.68	0.69	0.81	2.82	17148	1965	5	59	4	0	0	logfile
✔	7Y1R	33571	2025-05-12	2022-06-08	4.01	2.49	4.08	3.9	0.003	0.71	0.0	0.04	17.91	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.78	0.0	0.04	13.22	0.00	2.416	9.49	0.00	6.6	93.3	0.1	-2.62	0.69	0.62	0.61	—	8565	1041	11	0	20	0	0	logfile
✔	7Y1K	33564	2025-05-12	2022-06-08	3.8	4.04	3.86	4.0	0.005	0.61	0.0	0.04	12.89	0.00	2.011	7.48	2.96	1.7	98.3	0.0	0.96	0.66	0.82	2.35	3.9	0.003	0.63	0.0	0.04	14.38	0.00	1.926	8.14	3.57	2.0	98.0	0.0	2.58	1.03	0.65	0.81	1.39	8510	1164	2	0	5	0	0	logfile
✔	7Y1L	33565	2025-05-12	2022-06-08	3.73	3.98	3.75	3.9	0.005	0.59	0.0	0.04	12.44	0.00	2.202	8.44	1.03	1.8	98.2	0.0	2.57	0.64	0.85	1.27	3.9	0.003	0.60	0.0	0.04	14.67	0.00	2.024	8.11	1.94	0.9	99.1	0.0	2.67	0.47	0.64	0.84	0.76	8955	1189	2	0	5	0	0	logfile
✔	7Y1J	33563	2025-05-13	2022-06-08	3.0	3.08	2.83	3.1	0.004	0.51	0.0	0.04	12.14	0.00	1.971	5.91	0.69	0.8	99.2	0.0	2.20	0.67	0.83	3.67	3.1	0.003	0.50	0.0	0.04	15.21	0.00	1.943	4.97	2.07	1.2	98.8	0.0	2.73	0.43	0.71	0.86	3.12	9487	1204	2	0	5	0	0	logfile

• ← previous
• Page 344 of 642
• next →