Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D8Q	27254	2025-05-10	2022-06-08	4.2	3.68	18.15	3.7	0.012	1.24	0.0	0.05	11.02	0.01	2.139	1.66	0.53	1.5	98.3	0.2	2.20	0.67	0.74	—	3.6	0.003	0.69	0.0	0.04	13.00	0.00	2.513	10.67	0.00	5.5	94.5	0.0	-0.27	1.01	0.67	0.76	—	5202	669	6	0	1	0	0	logfile
✔	7Y1T	33572	2025-05-11	2022-06-08	3.24	3.67	3.31	3.5	0.003	0.88	0.0	0.09	16.88	0.00	1.998	8.09	0.00	4.1	95.9	0.0	-0.76	0.73	0.75	1.76	3.5	0.003	0.67	0.0	0.05	15.57	0.00	2.119	8.47	2.68	5.3	94.7	0.0	-0.67	0.52	0.74	0.79	2.59	8112	1030	10	0	24	0	0	logfile
✔	7Y1F	33562	2025-05-12	2022-06-08	3.3	3.13	3.30	3.2	0.007	1.12	0.0	0.06	13.79	0.01	2.215	9.10	0.00	6.7	93.3	0.0	-2.25	0.55	0.71	3.16	3.3	0.003	0.71	0.0	0.04	15.91	0.00	2.437	11.48	3.03	5.8	94.2	0.0	-0.17	1.18	0.54	0.71	1.92	8691	1131	6	0	0	0	0	logfile
✔	8D8o	27253	2025-05-14	2022-06-08	3.35	3.59	3.31	3.5	0.004	0.58	0.0	0.04	15.92	0.01	2.133	7.67	0.16	5.9	94.1	0.0	-0.78	0.73	0.82	2.46	3.5	0.003	0.58	0.0	0.04	16.49	0.00	2.361	5.65	3.88	6.0	94.0	0.0	-0.80	0.87	0.73	0.83	2.35	11819	1536	3	0	1	0	0	logfile
✔	7Y1B	33559	2025-05-09	2022-06-08	3.23	3.55	3.33	3.5	0.006	0.64	0.0	0.05	14.26	0.01	2.340	4.92	0.00	9.8	90.2	0.0	-1.42	0.74	0.84	3.37	3.4	0.003	0.60	0.0	0.04	15.70	0.00	2.546	3.20	0.42	5.1	94.9	0.0	-0.12	0.90	0.72	0.86	3.24	4137	541	3	0	0	0	0	logfile
✔	7Y1J	33563	2025-05-13	2022-06-08	3.0	3.08	2.83	3.1	0.004	0.51	0.0	0.04	12.14	0.00	1.971	5.91	0.69	0.8	99.2	0.0	2.20	0.67	0.83	3.67	3.1	0.003	0.50	0.0	0.04	15.21	0.00	1.943	4.97	2.07	1.2	98.8	0.0	2.73	0.43	0.71	0.86	3.12	9487	1204	2	0	5	0	0	logfile
✔	7Y1N	33567	2025-05-12	2022-06-08	3.61	3.87	3.56	3.8	0.005	0.70	0.0	0.04	12.08	0.00	2.118	8.54	1.30	2.2	97.8	0.0	2.40	0.67	0.85	2.14	3.8	0.003	0.62	0.0	0.04	14.55	0.00	1.944	6.98	1.89	1.0	99.0	0.0	2.84	0.49	0.67	0.84	1.12	8763	1171	2	0	5	0	0	logfile
✔	8D8R	27255	2025-05-09	2022-06-08	4.1	4.18	14.91	4.1	0.012	1.26	0.0	0.06	10.92	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.003	0.71	0.0	0.05	13.19	0.01	2.539	12.60	0.00	7.4	92.6	0.0	-0.51	1.88	0.62	0.67	—	3323	425	4	0	1	0	0	logfile
✔	7Y1R	33571	2025-05-12	2022-06-08	4.01	2.49	4.08	3.9	0.003	0.71	0.0	0.04	17.91	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.78	0.0	0.04	13.22	0.00	2.416	9.49	0.00	6.6	93.3	0.1	-2.62	0.69	0.62	0.61	—	8565	1041	11	0	20	0	0	logfile
✔	8D7X	27237	2025-05-13	2022-06-07	3.4	3.65	3.40	3.5	0.006	0.71	1.0	0.05	13.45	0.00	2.219	8.94	0.60	8.6	91.2	0.2	-2.20	0.74	0.76	3.37	3.5	0.002	0.59	0.0	0.04	14.56	0.00	2.612	5.46	2.52	5.6	94.3	0.1	-1.73	0.34	0.82	0.85	2.71	10108	1484	3	0	1	0	0	logfile
✔	8D80	27241	2025-05-14	2022-06-07	3.6	3.97	3.35	3.6	0.005	0.64	0.0	0.05	15.29	0.01	2.212	8.72	0.75	5.7	93.7	0.6	-1.72	0.89	0.85	3.20	3.6	0.006	0.63	0.0	0.04	15.59	0.00	2.533	5.31	0.85	5.5	94.2	0.3	-1.44	0.52	0.89	0.85	2.97	11230	1542	5	0	3	0	0	logfile
✔	8D82	27244	2025-05-18	2022-06-07	3.22	3.52	3.30	3.4	0.003	0.55	0.0	0.04	19.91	0.00	2.239	6.01	0.95	4.6	95.4	0.0	-2.63	0.69	0.76	1.43	3.4	0.003	0.67	0.0	0.04	15.65	0.00	2.512	5.41	2.75	5.6	94.4	0.0	-0.74	1.06	0.71	0.83	2.34	17366	2108	20	0	38	0	0	logfile
✔	8D7R	27231	2025-05-13	2022-06-07	3.9	4.13	3.90	4.0	0.003	0.55	0.0	0.04	15.03	0.00	2.345	5.62	0.00	8.1	91.9	0.0	-3.25	0.60	0.56	0.88	4.0	0.003	0.72	0.0	0.04	14.84	0.00	2.448	7.88	2.55	8.8	91.2	0.0	-1.42	0.78	0.63	0.62	1.22	9627	1167	12	0	16	0	0	logfile
✔	8D85	27247	2025-05-11	2022-06-07	3.81	4.26	4.04	4.2	0.003	0.54	0.0	0.04	19.55	0.00	2.357	4.77	0.00	4.1	95.8	0.1	-2.45	0.68	0.64	0.81	4.2	0.003	0.79	0.0	0.05	15.43	0.01	2.424	6.94	2.72	5.4	94.5	0.1	-0.82	1.19	0.72	0.72	0.90	7093	865	10	0	11	0	0	logfile
✔	8D7E	27228	2025-05-16	2022-06-07	2.93	3.17	2.98	3.1	0.002	0.49	0.0	0.04	11.95	0.00	2.257	5.40	0.70	2.9	97.1	0.0	-2.25	0.67	0.81	3.32	3.1	0.004	0.66	0.0	0.04	15.64	0.00	2.457	4.49	5.01	4.3	95.7	0.0	0.02	1.58	0.67	0.86	3.43	8959	1143	9	0	8	0	0	logfile
✔	8D7H	27230	2025-05-15	2022-06-07	3.4	3.69	3.47	3.6	0.003	0.53	0.0	0.04	12.37	0.00	2.291	4.59	1.06	3.9	96.1	0.0	-1.37	0.68	0.76	1.60	3.6	0.003	0.70	0.0	0.05	13.63	0.00	2.369	4.14	2.94	5.9	94.1	0.0	0.32	0.57	0.71	0.83	1.83	12540	1526	22	0	32	0	0	logfile
✔	8D7Y	27238	2025-05-13	2022-06-07	3.4	3.72	3.45	3.6	0.007	0.58	0.0	0.05	13.76	0.00	2.276	11.11	0.72	6.8	92.6	0.6	-2.04	0.76	0.77	2.82	3.6	0.005	0.62	0.0	0.05	15.01	0.00	2.543	5.90	3.02	7.7	92.2	0.1	-2.08	0.39	0.80	0.83	2.71	10086	1484	3	0	1	0	0	logfile
✔	8D81	27242	2025-05-12	2022-06-07	3.9	4.14	3.88	4.1	0.004	0.66	0.0	0.05	14.94	0.00	2.266	9.87	1.32	7.1	92.4	0.6	-2.23	0.73	0.74	2.42	4.1	0.008	0.78	0.0	0.05	16.12	0.00	2.488	10.20	2.03	9.7	90.0	0.3	-2.10	0.56	0.76	0.82	1.93	9248	1198	3	0	2	0	0	logfile
✔	8D66	27218	2025-05-15	2022-06-06	3.14	3.25	3.05	3.2	0.009	1.02	0.0	0.06	18.54	0.01	2.309	7.77	0.00	6.2	93.8	0.0	-1.63	0.69	0.83	3.44	3.2	0.003	0.57	0.0	0.05	15.60	0.00	2.452	6.33	2.69	4.5	95.5	0.0	0.16	0.36	0.64	0.82	3.52	12800	1540	10	0	5	0	0	logfile
✔	8D64	27216	2025-05-14	2022-06-06	3.14	3.25	3.11	3.2	0.007	0.81	0.0	0.06	13.69	0.01	2.275	7.13	0.00	6.6	93.4	0.0	-3.61	0.72	0.84	3.27	3.2	0.004	0.61	0.0	0.05	15.34	0.00	2.555	4.49	2.62	5.8	94.2	0.0	-0.40	1.18	0.73	0.86	3.26	12545	1540	10	0	0	0	0	logfile

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