Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BGK	44516	2025-05-25	2024-04-19	3.28	2.28	—	2.1	0.003	0.70	0.0	0.05	16.63	0.01	2.140	7.78	0.00	6.6	93.4	0.0	-1.33	0.75	0.74	2.43	2.1	0.006	0.71	0.0	0.05	18.59	0.00	1.861	4.53	1.58	7.8	92.1	0.1	-0.75	0.48	0.75	0.75	2.26	26331	3066	8	75	1	0	0	logfile
✔	9BHA	44538	2025-05-15	2024-04-19	3.5	3.62	3.42	3.6	0.003	0.65	0.0	0.04	15.47	0.01	2.343	1.70	0.00	0.5	99.4	0.1	-1.83	0.72	0.77	2.78	3.6	0.004	0.65	0.0	0.04	17.81	0.00	2.507	6.46	2.05	2.1	97.9	0.0	0.95	0.80	0.74	0.78	2.04	13264	1586	4	49	0	0	0	logfile
✔	8Z6H	39799	2025-05-19	2024-04-19	3.1	3.39	3.02	3.3	0.004	0.64	0.0	0.05	14.22	0.01	2.195	7.11	0.00	6.9	92.9	0.2	0.03	0.68	0.82	2.65	3.3	0.004	0.58	0.0	0.04	15.34	0.00	2.511	4.33	1.59	7.0	92.9	0.0	0.54	0.41	0.69	0.86	2.28	17589	2196	8	0	7	0	0	logfile
✔	9BGZ	44527	2025-05-09	2024-04-19	3.0	2.38	3.02	2.9	0.003	0.54	0.0	0.04	15.10	0.00	2.258	7.60	0.66	1.7	98.3	0.0	2.35	0.73	0.84	2.25	2.9	0.004	0.70	0.0	0.04	16.88	0.01	2.506	10.54	3.97	0.8	99.2	0.0	2.08	1.76	0.74	0.85	2.26	2783	369	1	0	0	0	0	logfile
✔	9BH2	44530	2025-05-09	2024-04-19	2.7	2.39	2.64	2.8	0.003	0.52	0.0	0.04	15.81	0.00	2.104	6.79	0.62	1.7	98.3	0.0	2.82	0.73	0.81	2.13	2.8	0.004	0.70	0.0	0.04	16.66	0.00	2.516	12.47	3.10	2.2	97.8	0.0	2.38	0.50	0.77	0.83	2.53	3078	414	1	0	0	0	0	logfile
✔	9BHE	44542	2025-05-13	2024-04-19	3.8	4.96	3.90	4.1	0.013	1.43	0.0	0.08	15.88	0.01	2.197	14.89	0.28	3.6	96.4	0.0	-0.01	0.83	0.85	1.50	4.2	0.003	0.72	0.0	0.04	15.40	0.00	2.526	11.68	1.69	4.6	95.4	0.0	1.05	0.92	0.82	0.86	0.98	9878	1246	8	4	0	0	0	logfile
✔	9BH4	44532	2025-05-17	2024-04-19	2.55	2.75	2.55	2.8	0.004	0.75	0.0	0.04	11.49	0.00	2.254	8.77	0.00	1.8	98.2	0.0	0.18	0.72	0.85	4.64	2.8	0.003	0.57	0.0	0.04	15.35	0.00	2.369	6.07	1.85	2.7	97.3	0.0	0.28	1.32	0.73	0.88	4.16	16290	1980	12	0	6	0	0	logfile
✔	9BGY	44526	2025-05-09	2024-04-19	3.0	2.40	3.00	3.0	0.003	0.50	0.0	0.04	14.21	0.00	2.152	6.28	0.32	2.1	97.9	0.0	2.93	0.71	0.83	2.27	3.0	0.003	0.65	0.0	0.04	16.56	0.00	2.592	7.11	2.23	1.8	98.2	0.0	2.87	0.51	0.76	0.86	2.91	2916	389	1	0	0	0	0	logfile
✔	9BHC	44540	2025-05-13	2024-04-19	2.75	3.66	2.78	3.4	0.013	1.20	0.0	0.08	13.32	0.01	2.201	6.93	0.00	4.4	95.6	0.0	1.01	0.82	0.91	2.51	3.4	0.004	0.65	0.0	0.04	15.36	0.00	2.509	6.11	1.63	3.5	96.5	0.0	1.66	0.93	0.75	0.85	2.21	9608	1230	4	0	0	0	0	logfile
✔	9BH1	44529	2025-05-09	2024-04-19	3.1	2.56	3.08	3.1	0.003	0.48	0.0	0.04	13.56	0.00	2.269	5.60	0.00	0.3	99.7	0.0	2.41	0.71	0.83	3.08	3.0	0.004	0.66	0.0	0.04	16.35	0.00	2.578	10.38	3.86	1.3	98.7	0.0	1.85	1.77	0.75	0.85	2.20	2942	395	1	0	0	0	0	logfile
✔	8Z74	39810	2025-05-10	2024-04-19	3.01	2.28	3.02	2.1	0.003	0.63	0.0	0.04	14.94	0.00	2.235	13.45	0.00	3.9	96.1	0.0	0.52	0.73	0.74	2.84	2.1	0.003	0.64	0.0	0.04	15.20	0.00	2.556	10.48	2.78	3.3	96.7	0.0	0.53	0.27	0.71	0.73	2.93	6709	847	5	0	2	0	0	logfile
✔	9BH0	44528	2025-05-09	2024-04-19	3.4	2.55	3.39	3.3	0.003	0.57	0.0	0.04	14.29	0.00	2.071	4.94	0.32	2.1	97.9	0.0	2.89	0.74	0.83	2.29	3.3	0.004	0.65	0.0	0.04	16.45	0.00	2.529	5.76	3.48	0.3	99.7	0.0	2.67	0.98	0.79	0.85	1.64	2934	391	2	0	0	0	0	logfile
✔	8Z6X	39807	2025-05-10	2024-04-19	2.96	3.13	2.88	1.8	0.003	0.54	0.0	0.05	9.21	0.00	2.186	4.00	3.07	7.2	92.6	0.2	-2.58	0.75	0.88	4.17	1.8	0.004	0.74	0.0	0.05	13.57	0.00	2.487	6.05	3.07	7.5	92.5	0.0	-0.64	1.77	0.76	0.92	3.79	4704	618	3	0	0	0	0	logfile
✔	9BH6	44534	2025-05-23	2024-04-19	3.3	2.41	3.32	3.3	0.003	0.61	0.0	0.04	12.64	0.01	2.304	1.35	0.00	0.5	99.4	0.1	-1.51	0.84	0.81	3.48	3.3	0.002	0.58	0.0	0.04	15.39	0.00	2.497	5.15	1.49	1.4	98.6	0.0	1.42	1.36	0.84	0.82	2.35	24388	3096	4	0	0	0	0	logfile
✔	9BH7	44535	2025-05-14	2024-04-19	3.5	3.43	3.54	3.6	0.003	0.64	0.0	0.04	12.66	0.01	2.370	1.58	0.00	0.7	99.2	0.1	-1.16	0.83	0.78	2.21	3.6	0.003	0.59	0.0	0.04	15.97	0.00	2.516	6.12	2.40	2.0	98.0	0.0	1.99	1.45	0.83	0.79	0.90	12166	1544	2	0	0	0	0	logfile
✔	9BH9	44537	2025-05-15	2024-04-19	3.5	3.53	3.41	3.5	0.003	0.68	0.0	0.05	15.03	0.01	2.362	1.75	0.07	0.6	99.4	0.0	-2.11	0.72	0.76	2.80	3.5	0.003	0.66	0.0	0.04	17.72	0.00	2.467	6.92	1.55	2.1	97.9	0.0	0.73	2.06	0.74	0.76	1.53	13155	1574	4	50	0	0	0	logfile
✔	9BGN	44518	2025-05-26	2024-04-19	3.3	3.22	3.29	3.2	0.002	0.54	0.0	0.04	16.23	0.00	2.170	5.13	0.14	8.4	91.5	0.1	-1.80	0.40	0.86	2.67	3.2	0.002	0.58	0.0	0.04	16.64	0.00	2.261	3.68	2.09	8.6	91.4	0.1	-1.83	1.18	0.41	0.88	2.55	27855	3591	9	0	0	0	0	logfile
✔	9BGF	44511	2025-05-11	2024-04-18	2.9	2.71	2.78	2.9	0.003	0.53	0.0	0.04	14.49	0.00	1.906	7.29	0.25	4.2	95.8	0.0	1.17	0.74	0.84	4.53	2.9	0.003	0.59	0.0	0.04	16.68	0.00	1.949	7.29	2.11	5.2	94.8	0.0	0.76	0.33	0.72	0.84	3.43	7317	857	5	0	16	0	0	logfile
✔	9BFR	44504	2025-05-10	2024-04-18	3.19	3.40	3.23	3.4	0.006	1.12	0.0	0.06	13.10	0.01	2.440	1.77	0.00	2.9	97.1	0.0	-4.21	0.59	0.77	2.43	3.4	0.003	0.58	0.0	0.04	15.60	0.00	2.585	5.22	1.45	2.5	97.5	0.0	-1.08	0.57	0.61	0.79	2.11	6266	766	4	0	6	0	0	logfile
✔	8Z67	39794	2025-05-09	2024-04-18	3.2	2.13	3.11	1.9	0.011	1.10	1.0	0.08	13.56	0.01	1.708	10.35	1.71	3.4	96.6	0.0	0.94	0.60	0.66	4.42	1.9	0.004	0.58	0.0	0.05	14.98	0.00	2.662	7.49	1.28	3.4	96.6	0.0	1.54	1.12	0.71	0.77	4.20	2304	297	1	0	0	0	0	logfile

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