Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z5H	39774	2025-05-10	2024-04-18	3.3	2.39	3.10	2.2	0.006	0.77	1.0	0.05	12.98	0.00	2.336	9.05	0.16	6.0	94.0	0.0	-0.46	0.78	0.79	3.21	2.2	0.004	0.61	0.0	0.04	16.05	0.00	2.528	4.80	2.89	4.2	95.8	0.0	0.71	0.94	0.79	0.82	2.49	6645	911	4	0	0	0	0	logfile
✔	8Z66	39793	2025-05-09	2024-04-18	3.06	2.07	2.53	2.0	0.006	0.94	1.0	0.05	13.50	0.01	2.243	10.65	0.00	4.1	95.9	0.0	-0.94	0.73	0.73	4.05	2.0	0.004	0.64	0.0	0.04	15.64	0.00	2.619	8.57	2.87	3.4	96.6	0.0	1.70	0.92	0.73	0.74	2.40	2220	296	1	0	0	0	0	logfile
✔	8Z5R	39779	2025-05-14	2024-04-18	3.52	3.72	3.56	3.7	0.003	0.59	0.0	0.04	18.19	0.00	2.234	5.54	0.60	5.7	94.3	0.0	1.59	0.54	0.74	0.55	3.7	0.003	0.61	0.0	0.04	18.33	0.00	2.521	6.04	3.26	6.9	93.1	0.1	0.84	0.43	0.56	0.79	0.67	11273	1462	4	0	1	0	0	logfile
✔	9BFU	44507	2025-05-25	2024-04-18	4.07	3.95	—	3.5	0.007	1.29	2.0	0.07	13.62	0.01	2.355	3.46	0.00	3.8	96.2	0.0	-1.97	0.86	0.83	—	3.5	0.003	0.62	0.0	0.04	13.16	0.00	2.484	7.67	0.00	2.6	97.4	0.0	-0.07	0.42	0.86	0.84	—	25696	3304	8	0	30	0	0	logfile
✔	9BGi	44513	2025-05-10	2024-04-18	3.05	3.32	3.06	3.2	0.004	0.52	0.0	0.04	20.54	0.00	1.899	4.85	1.77	4.2	95.8	0.0	0.49	0.52	0.90	3.15	3.2	0.003	0.50	0.0	0.04	20.49	0.00	1.967	4.53	2.30	3.9	96.1	0.0	1.41	0.23	0.51	0.90	3.16	6511	676	14	48	4	177	0	logfile
✔	8Z68	39795	2025-05-11	2024-04-18	2.64	2.24	2.62	2.0	0.009	0.80	3.0	0.06	14.04	0.00	2.138	10.82	0.82	4.1	95.9	0.0	0.19	0.79	0.80	4.19	2.0	0.005	0.61	0.0	0.04	15.53	0.00	2.566	7.55	2.35	3.7	96.3	0.0	0.34	0.43	0.81	0.82	4.00	8543	1140	5	0	0	0	0	logfile
✔	9BFQ	44503	2025-05-13	2024-04-18	3.09	2.63	3.10	3.2	0.008	1.24	4.0	0.07	13.92	0.01	2.341	2.50	0.08	3.2	96.8	0.0	-2.70	0.69	0.79	3.32	3.2	0.005	0.66	0.0	0.04	15.44	0.00	2.406	7.17	1.44	2.9	97.1	0.0	-0.31	0.47	0.69	0.79	2.74	10958	1365	4	0	5	0	0	logfile
✔	8Z64	39791	2025-05-13	2024-04-18	3.53	2.39	3.45	2.1	0.003	0.49	0.0	0.04	10.50	0.00	2.227	6.24	3.20	4.5	95.5	0.0	-2.69	0.71	0.73	2.21	3.1	0.003	0.68	0.0	0.05	14.29	0.00	2.424	8.83	5.05	7.3	92.7	0.0	-0.75	0.63	0.74	0.75	2.22	9665	1162	11	0	21	0	0	logfile
✔	9BFS	44505	2025-05-23	2024-04-18	3.06	3.31	3.15	3.3	0.007	1.27	3.0	0.07	14.10	0.01	2.355	3.04	0.00	3.9	96.1	0.0	-2.34	0.70	0.77	3.09	3.3	0.003	0.60	0.0	0.04	15.23	0.00	2.523	6.36	1.54	2.6	97.4	0.0	-0.41	1.26	0.70	0.85	2.99	24272	3032	8	0	26	0	0	logfile
✔	9BGG	44512	2025-05-10	2024-04-18	3.4	3.61	3.48	3.6	0.003	0.54	0.0	0.04	12.81	0.00	2.200	8.11	0.00	3.0	97.0	0.0	0.43	0.69	0.76	2.07	3.6	0.003	0.62	0.0	0.04	15.35	0.00	2.361	8.40	1.54	3.9	96.1	0.0	0.51	0.93	0.70	0.77	2.01	6925	835	4	0	4	0	0	logfile
✔	8Z67	39794	2025-05-09	2024-04-18	3.2	2.13	3.11	1.9	0.011	1.10	1.0	0.08	13.56	0.01	1.708	10.35	1.71	3.4	96.6	0.0	0.94	0.60	0.66	4.42	1.9	0.004	0.58	0.0	0.05	14.98	0.00	2.662	7.49	1.28	3.4	96.6	0.0	1.54	1.12	0.71	0.77	4.20	2304	297	1	0	0	0	0	logfile
✔	8Z65	39792	2025-05-11	2024-04-18	2.97	2.13	3.01	2.0	0.008	0.82	4.0	0.06	13.56	0.00	2.023	9.65	0.24	5.2	94.8	0.0	-0.38	0.78	0.77	3.94	2.0	0.003	0.63	0.0	0.04	15.83	0.00	2.568	8.00	2.91	4.0	96.0	0.0	0.63	0.46	0.78	0.80	3.16	8494	1149	5	0	0	0	0	logfile
✔	9BFP	44502	2025-05-11	2024-04-18	2.78	3.22	2.80	3.1	0.007	1.24	2.0	0.07	13.56	0.01	2.356	2.52	0.00	2.7	97.3	0.0	-2.06	0.72	0.83	3.43	3.1	0.003	0.60	0.0	0.04	16.21	0.00	2.525	5.90	1.48	2.1	97.9	0.0	0.21	0.58	0.74	0.86	3.40	8263	1034	3	0	4	0	0	logfile
✔	9BFi	44497	2025-05-09	2024-04-17	2.66	2.90	2.77	2.9	0.003	0.68	0.0	0.04	12.28	0.01	2.274	2.64	0.00	1.5	98.5	0.0	0.42	0.55	0.80	3.23	2.9	0.003	0.55	0.0	0.04	14.69	0.00	2.608	3.83	0.76	2.1	97.7	0.2	1.91	0.33	0.52	0.81	3.06	3766	489	1	0	0	0	0	logfile
✔	9BFJ	44498	2025-05-09	2024-04-17	2.35	2.59	2.47	2.6	0.005	0.65	0.0	0.04	15.09	0.01	2.196	3.24	0.00	1.0	99.0	0.0	0.78	0.61	0.86	4.12	2.6	0.002	0.50	0.0	0.04	15.37	0.00	2.283	5.84	1.00	1.4	98.6	0.0	2.08	0.79	0.60	0.86	3.06	3833	496	2	0	3	0	0	logfile
✔	9F0L	50113	2025-05-10	2024-04-17	2.76	3.53	2.77	3.3	0.002	0.43	0.0	0.03	18.24	0.00	2.271	7.78	0.84	0.4	99.6	0.0	3.17	0.87	0.84	2.02	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.544	5.92	2.52	0.9	99.1	0.0	4.17	0.32	0.83	0.82	1.52	6119	791	1	0	0	0	0	logfile
✔	8Z4J	39766	2025-05-20	2024-04-17	2.97	3.22	3.08	3.2	0.008	1.39	1.0	0.07	18.57	0.01	2.067	9.56	1.94	5.6	94.1	0.3	-2.99	0.73	0.81	2.53	3.2	0.004	0.71	0.0	0.04	18.86	0.00	2.097	10.24	3.27	3.8	96.0	0.2	-0.14	0.53	0.73	0.83	2.82	20655	2521	20	72	7	0	0	logfile
✔	8Z4L	39767	2025-05-22	2024-04-17	2.85	3.07	2.94	3.1	0.008	1.30	3.0	0.07	18.49	0.01	2.088	7.90	1.54	4.5	95.4	0.1	-2.71	0.70	0.80	2.73	3.1	0.003	0.76	0.0	0.04	18.98	0.00	2.128	9.64	3.41	2.8	97.2	0.0	0.19	1.71	0.70	0.82	2.96	22713	2683	23	89	9	0	0	logfile
✔	8Z4E	39762	2025-05-10	2024-04-17	3.0	2.37	3.11	2.1	0.003	0.62	1.0	0.05	12.62	0.00	2.230	8.56	0.00	6.1	93.4	0.5	-0.63	0.72	0.68	3.09	2.1	0.004	0.70	0.0	0.05	14.92	0.01	2.251	9.12	2.47	7.7	91.8	0.5	-0.70	2.54	0.74	0.73	2.96	6327	821	7	0	3	0	0	logfile
✔	9F0J	50111	2025-05-22	2024-04-16	3.35	3.22	3.18	3.2	0.004	0.53	0.0	0.04	15.05	0.00	1.821	8.84	0.00	5.1	94.9	0.0	0.41	0.73	0.80	1.55	3.2	0.003	0.56	0.0	0.04	16.79	0.00	2.171	6.46	0.52	5.6	94.4	0.0	1.28	0.85	0.73	0.84	1.89	22736	1280	8	60	2	0	11172	logfile

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