Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BER	44482	2025-05-20	2024-04-16	4.1	4.97	4.17	4.1	0.005	0.88	1.0	0.06	16.15	0.01	1.899	5.81	0.24	7.4	92.5	0.1	-2.06	0.83	0.81	—	4.2	0.012	0.74	0.0	0.05	12.70	0.00	2.375	11.92	0.00	7.7	92.3	0.0	-1.91	1.30	0.84	0.84	—	20350	2416	36	0	100	0	0	logfile
✔	8Z40	39759	2025-05-21	2024-04-16	3.26	3.96	3.30	3.6	0.003	0.66	0.0	0.04	16.15	0.01	2.201	7.97	0.13	5.2	94.6	0.2	0.15	0.88	0.86	2.25	3.6	0.003	0.59	0.0	0.04	16.53	0.00	2.462	5.31	1.56	4.9	95.0	0.1	0.74	0.35	0.88	0.87	2.09	21893	2810	6	0	0	0	0	logfile
✔	9BF6	44491	2025-05-20	2024-04-16	4.5	7.51	4.65	4.5	0.003	0.71	2.0	0.05	12.77	0.00	2.022	3.80	0.10	8.4	91.4	0.2	-1.57	0.83	0.78	—	4.5	0.004	0.76	0.0	0.05	12.93	0.00	2.406	14.75	0.00	9.9	90.0	0.1	-1.66	0.88	0.84	0.82	—	20330	2367	39	0	130	0	0	logfile
✔	8Z3W	39756	2025-05-28	2024-04-16	3.45	2.51	3.36	2.0	0.003	0.46	0.0	0.04	8.67	0.00	2.254	5.22	1.56	2.4	97.6	0.0	-1.98	0.73	0.72	2.29	2.1	0.004	0.69	1.0	0.05	12.80	0.00	2.364	8.16	3.12	4.4	95.6	0.0	-0.30	0.70	0.76	0.77	1.99	30949	3803	28	0	71	0	0	logfile
✔	9BF1	44486	2025-05-19	2024-04-16	3.1	2.28	3.14	3.8	0.003	0.48	0.0	0.04	14.85	0.00	2.174	7.67	0.00	5.3	94.7	0.0	0.71	0.47	0.28	0.12	2.0	0.003	0.56	0.0	0.04	17.07	0.00	2.518	8.77	1.65	4.4	95.6	0.0	0.71	1.45	0.72	0.73	1.93	18158	2244	2	0	0	0	0	logfile
✔	9F0J	50111	2025-05-22	2024-04-16	3.35	3.22	3.18	3.2	0.004	0.53	0.0	0.04	15.05	0.00	1.821	8.84	0.00	5.1	94.9	0.0	0.41	0.73	0.80	1.55	3.2	0.003	0.56	0.0	0.04	16.79	0.00	2.171	6.46	0.52	5.6	94.4	0.0	1.28	0.85	0.73	0.84	1.89	22736	1280	8	60	2	0	11172	logfile
✔	9BF5	44490	2025-05-20	2024-04-16	3.07	2.31	3.11	2.0	0.002	0.50	0.0	0.04	16.90	0.00	2.131	5.28	0.00	5.7	94.3	0.0	-0.15	0.77	0.76	1.93	2.0	0.003	0.56	0.0	0.04	17.66	0.00	2.331	3.43	2.37	6.5	93.5	0.0	0.07	0.31	0.77	0.77	1.99	19742	2380	4	26	0	0	0	logfile
✔	9BEi	44479	2025-05-10	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.79	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.004	0.77	0.0	0.05	14.68	0.01	2.460	21.84	0.00	9.4	90.5	0.1	-1.60	0.49	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	8Z3Q	39751	2025-05-11	2024-04-15	2.76	2.27	2.68	2.1	0.004	0.68	1.0	0.04	15.34	0.00	2.205	5.99	1.24	3.3	96.7	0.0	0.45	0.83	0.83	2.89	2.1	0.003	0.59	0.0	0.04	15.82	0.00	2.397	3.93	4.08	4.4	95.6	0.0	0.77	0.32	0.82	0.83	3.17	8277	1124	5	0	0	0	0	logfile
✔	9BEE	44477	2025-05-09	2024-04-15	3.4	3.98	3.20	3.9	0.013	1.84	1.0	0.10	11.72	0.02	2.467	4.56	0.00	11.9	88.1	0.0	-2.32	0.47	0.59	1.69	3.9	0.002	0.58	0.0	0.05	15.83	0.00	2.356	6.19	3.45	3.8	96.2	0.0	-0.44	1.53	0.50	0.68	2.14	3046	189	2	0	7	0	1501	logfile
✔	8Z3P	39750	2025-05-27	2024-04-15	3.4	3.55	3.37	2.1	0.004	0.71	0.0	0.05	15.00	0.01	1.981	31.69	0.17	6.8	93.0	0.2	-0.61	0.91	0.83	1.87	2.2	0.005	0.65	0.0	0.04	16.09	0.00	1.919	10.84	1.38	6.1	93.7	0.2	0.35	1.02	0.91	0.85	1.95	29494	3687	15	18	14	0	0	logfile
✔	8Z3o	39749	2025-05-09	2024-04-15	3.3	2.24	3.16	2.1	0.008	0.98	1.0	0.06	14.14	0.01	2.386	9.88	0.98	7.4	92.6	0.0	-0.69	0.65	0.78	5.58	2.0	0.004	0.60	0.0	0.04	16.36	0.00	2.584	3.13	2.44	3.2	96.8	0.0	0.43	0.41	0.67	0.79	3.37	2159	286	1	0	0	0	0	logfile
✔	8Z3M	39747	2025-05-11	2024-04-15	2.9	2.28	2.83	2.0	0.006	0.72	1.0	0.06	12.81	0.00	1.867	10.73	0.12	4.0	96.0	0.0	0.49	0.78	0.81	3.34	2.0	0.003	0.60	0.0	0.04	15.23	0.00	2.466	7.63	2.49	3.0	97.0	0.0	0.79	0.88	0.79	0.82	2.73	8395	1147	5	0	0	0	0	logfile
✔	9F02	50092	2025-05-23	2024-04-15	3.02	2.19	3.06	2.1	0.002	0.53	0.0	0.04	9.92	0.00	2.183	4.63	1.24	3.1	96.9	0.0	0.64	0.80	0.78	3.08	2.0	0.003	0.63	0.0	0.04	13.22	0.00	2.523	4.88	1.90	2.6	97.4	0.0	0.78	1.05	0.78	0.80	3.17	24183	2991	39	0	81	0	0	logfile
✔	9BE8	44473	2025-05-15	2024-04-15	4.14	4.17	4.01	4.1	0.002	0.35	0.0	0.05	15.12	0.00	2.113	4.71	0.00	0.0	100.0	0.0	0.87	0.65	0.74	—	4.1	0.007	0.59	0.0	0.05	15.11	0.00	2.349	8.40	0.00	0.0	100.0	0.0	0.41	1.28	0.68	0.78	—	12750	810	12	0	0	0	6342	logfile
✔	8Z3K	39746	2025-05-24	2024-04-15	3.19	3.44	3.35	2.2	0.006	0.67	0.0	0.04	13.55	0.00	1.964	12.42	0.00	8.6	90.8	0.6	-0.81	0.90	0.82	2.53	2.2	0.004	0.68	0.0	0.04	15.13	0.00	2.460	9.39	1.92	8.2	91.2	0.6	-0.13	1.07	0.90	0.84	2.39	25451	3244	10	12	4	0	0	logfile
✔	9BE5	44470	2025-05-14	2024-04-14	3.3	3.65	3.38	3.7	0.004	0.58	0.0	0.03	28.07	0.00	2.167	10.73	0.00	2.0	98.0	0.0	1.53	0.69	0.79	2.77	3.7	0.004	0.56	0.0	0.03	28.52	0.00	2.209	8.21	1.76	2.0	98.0	0.0	2.61	0.36	0.68	0.80	1.93	11898	751	10	290	0	0	0	logfile
✔	9BE6	44471	2025-05-13	2024-04-14	3.0	3.23	3.04	3.2	0.004	0.59	0.0	0.04	26.77	0.00	2.285	4.68	0.16	1.8	98.2	0.0	2.08	0.75	0.84	2.91	3.2	0.003	0.54	0.0	0.03	27.25	0.00	2.470	3.94	1.12	1.8	98.2	0.0	2.96	0.87	0.74	0.86	2.48	11163	751	10	254	0	0	0	logfile
✔	8Z2Z	39745	2025-05-13	2024-04-14	3.25	3.53	3.27	3.5	0.007	0.79	0.0	0.05	12.73	0.00	2.213	9.53	0.00	3.4	96.6	0.0	-0.97	0.74	0.81	2.30	3.5	0.005	0.60	0.0	0.04	14.90	0.00	2.449	9.06	2.01	4.0	96.0	0.0	-0.59	1.05	0.76	0.85	3.00	10860	1320	8	0	4	0	0	logfile
✔	8Z1Y	39740	2025-05-16	2024-04-12	2.73	2.22	2.78	2.0	0.016	1.98	36.0	0.15	13.06	0.02	2.358	0.25	0.07	2.0	98.0	0.0	-1.30	0.69	0.72	4.83	2.0	0.004	0.71	0.0	0.04	16.90	0.00	2.449	6.52	1.96	2.1	97.9	0.0	0.85	0.56	0.80	0.80	3.17	13897	1773	7	0	4	0	0	logfile

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