Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z1V	39737	2025-05-13	2024-04-12	3.16	2.44	3.14	2.1	0.026	2.22	84.0	0.24	12.47	0.01	2.288	0.52	0.00	0.7	99.3	0.0	-0.95	0.68	0.72	3.64	2.2	0.004	0.69	0.0	0.04	15.95	0.00	2.536	5.11	1.95	1.6	98.4	0.0	1.48	1.17	0.78	0.82	2.42	9562	1234	6	0	2	0	0	logfile
✔	9BDS	44468	2025-05-15	2024-04-12	3.6	4.18	3.73	4.1	0.002	0.43	0.0	0.05	15.41	0.00	2.246	2.24	0.57	0.8	99.2	0.0	0.35	0.62	0.75	3.05	4.1	0.004	0.50	0.0	0.05	16.25	0.00	2.429	4.02	4.02	2.8	97.2	0.0	-0.88	1.08	0.62	0.78	3.67	12948	816	18	0	0	0	6426	logfile
✔	8Z2F	39744	2025-05-20	2024-04-12	3.65	3.47	3.61	3.6	0.013	1.19	1.0	0.05	18.51	0.01	1.753	40.20	0.30	12.7	86.7	0.6	-3.25	0.63	0.58	0.61	3.7	0.003	0.76	0.0	0.05	18.59	0.00	2.380	20.28	4.85	8.9	90.6	0.4	-1.83	1.22	0.62	0.57	0.42	20404	2748	6	0	0	0	0	logfile
✔	9BDQ	44465	2025-05-16	2024-04-12	2.26	2.12	2.29	1.9	0.006	0.81	1.0	0.05	17.38	0.01	2.162	13.60	3.68	3.6	96.3	0.1	1.12	0.76	0.80	2.58	1.9	0.004	0.70	0.0	0.04	17.96	0.00	2.409	9.10	2.83	3.7	96.3	0.0	1.36	0.51	0.82	0.82	2.91	14667	1828	6	0	2	0	0	logfile
✔	8Z27	39743	2025-05-16	2024-04-12	2.86	3.87	2.96	3.2	0.007	1.41	9.0	0.11	24.39	0.02	2.290	7.15	32.69	1.4	98.2	0.4	3.16	0.64	0.48	0.87	3.2	0.003	0.78	0.0	0.04	18.23	0.01	2.517	13.46	3.53	4.1	95.7	0.2	0.11	1.34	0.78	0.74	0.77	8596	1047	8	0	14	0	0	logfile
✔	8Z1Y	39740	2025-05-16	2024-04-12	2.73	2.22	2.78	2.0	0.016	1.98	36.0	0.15	13.06	0.02	2.358	0.25	0.07	2.0	98.0	0.0	-1.30	0.69	0.72	4.83	2.0	0.004	0.71	0.0	0.04	16.90	0.00	2.449	6.52	1.96	2.1	97.9	0.0	0.85	0.56	0.80	0.80	3.17	13897	1773	7	0	4	0	0	logfile
✔	8Z21	39742	2025-05-13	2024-04-12	3.17	2.37	3.17	2.1	0.016	1.90	24.0	0.13	12.03	0.01	2.544	0.05	0.00	1.4	98.6	0.0	-0.98	0.79	0.81	4.45	2.1	0.003	0.67	0.0	0.04	15.11	0.00	2.542	5.67	1.35	1.9	98.1	0.0	1.47	0.71	0.79	0.82	2.29	9545	1235	6	0	2	0	0	logfile
✔	9BDC	44448	2025-05-14	2024-04-11	2.54	2.10	2.55	2.0	0.003	0.67	0.0	0.05	17.86	0.01	2.280	4.90	0.18	2.5	97.5	0.0	0.28	0.59	0.52	3.09	2.0	0.003	0.56	0.0	0.04	19.43	0.00	2.475	6.36	1.70	2.8	97.2	0.0	1.18	0.51	0.80	0.81	2.48	12026	1392	6	61	0	0	0	logfile
✔	9BDD	44449	2025-05-14	2024-04-11	2.86	2.19	2.86	2.0	0.004	0.70	0.0	0.06	17.26	0.01	2.249	5.54	0.26	1.8	98.2	0.0	0.22	0.61	0.60	3.11	2.0	0.003	0.58	0.0	0.04	18.98	0.00	2.466	6.66	2.81	2.3	97.7	0.0	1.49	1.03	0.78	0.79	2.77	12313	1397	7	61	1	0	0	logfile
✔	9BD8	44446	2025-05-10	2024-04-11	4.8	6.12	4.01	5.1	0.003	0.63	0.0	0.04	13.22	0.00	2.141	25.69	0.00	7.9	92.1	0.0	-2.18	0.86	0.81	—	5.1	0.003	0.66	0.0	0.04	13.38	0.00	2.541	21.35	0.00	8.6	91.4	0.0	-2.56	0.34	0.86	0.82	—	5369	726	3	0	1	0	0	logfile
✔	8Z1M	39730	2025-05-21	2024-04-11	3.25	2.74	3.08	3.2	0.011	1.08	0.0	0.08	17.36	0.01	2.084	12.49	1.20	6.0	93.6	0.5	0.11	0.53	0.66	2.90	3.2	0.002	0.53	0.0	0.04	17.83	0.00	2.517	8.32	3.11	6.1	93.6	0.3	0.78	1.16	0.73	0.83	2.66	20694	2748	6	0	0	0	0	logfile
✔	9BDE	44450	2025-05-18	2024-04-11	4.18	4.60	4.16	4.2	0.002	0.61	0.0	0.04	13.84	0.00	2.153	18.99	0.00	6.7	93.3	0.0	-1.80	0.86	0.78	—	4.2	0.004	0.70	0.0	0.04	13.87	0.00	2.138	15.99	0.00	8.1	91.9	0.0	-2.27	0.37	0.87	0.79	—	17216	2340	8	0	12	0	0	logfile
✔	8Z1F	39726	2025-05-15	2024-04-11	4.3	4.91	4.67	4.5	0.002	0.52	0.0	0.04	18.29	0.00	1.966	6.76	0.00	5.3	94.1	0.6	0.23	0.74	0.55	—	4.5	0.005	0.72	0.0	0.05	19.37	0.00	1.750	19.58	0.00	10.9	88.4	0.6	-1.90	1.29	0.78	0.65	—	12569	668	3	66	3	0	5934	logfile
✔	8Z1C	39722	2025-05-21	2024-04-11	3.15	3.03	3.15	3.2	0.009	1.01	0.0	0.07	16.34	0.01	2.137	14.92	1.14	7.8	92.0	0.2	-1.12	0.57	0.65	2.20	3.2	0.004	0.61	0.0	0.04	17.00	0.00	2.529	12.50	3.42	7.4	92.4	0.2	-0.48	0.31	0.70	0.77	1.97	20802	2760	6	0	0	0	0	logfile
✔	8Z1o	39732	2025-05-21	2024-04-11	3.6	3.53	3.50	3.6	0.004	0.61	0.0	0.04	15.87	0.00	2.130	9.91	0.19	2.3	97.5	0.2	1.02	0.79	0.83	1.75	3.6	0.003	0.55	0.0	0.04	16.45	0.00	2.528	5.66	2.96	1.9	97.9	0.2	1.76	1.44	0.79	0.83	1.63	20802	2748	6	0	0	0	0	logfile
✔	8Z1N	39731	2025-05-21	2024-04-11	3.18	2.94	3.24	3.2	0.008	0.82	0.0	0.06	16.73	0.01	2.130	15.25	0.95	5.4	94.3	0.4	-0.41	0.55	0.63	2.29	3.2	0.003	0.57	0.0	0.04	17.32	0.00	2.583	10.91	3.57	4.8	95.1	0.2	0.24	1.13	0.70	0.78	1.62	20789	2760	6	0	0	0	0	logfile
✔	8Z1E	39724	2025-05-10	2024-04-11	3.12	3.44	3.19	3.4	0.002	0.43	0.0	0.03	14.56	0.00	2.273	4.34	0.44	1.2	98.8	0.0	0.87	0.57	0.82	1.73	3.4	0.003	0.53	0.0	0.04	15.36	0.00	2.469	4.95	4.51	1.6	98.4	0.0	2.40	0.30	0.66	0.86	1.54	6516	834	3	0	0	0	0	logfile
✔	8Z0P	39710	2025-05-12	2024-04-10	3.1	3.23	3.20	3.3	0.010	0.68	0.0	0.04	15.66	0.00	1.926	7.25	1.17	7.5	91.8	0.7	-1.15	0.58	0.73	2.06	3.2	0.004	0.68	0.0	0.04	16.44	0.00	1.936	5.30	2.54	9.6	89.5	0.9	-1.68	1.06	0.60	0.76	1.85	9246	586	2	0	3	0	4627	logfile
✔	8Z0o	39709	2025-05-14	2024-04-10	3.2	3.80	3.28	3.7	0.015	0.81	0.0	0.04	14.91	0.01	2.152	12.49	2.30	5.1	94.8	0.1	1.29	0.51	0.74	2.01	3.7	0.003	0.56	0.0	0.04	15.69	0.00	2.164	8.27	3.07	5.9	94.1	0.0	1.55	1.39	0.56	0.79	2.09	12296	1522	6	2	2	0	0	logfile
✔	8Z0R	39713	2025-05-15	2024-04-10	2.53	2.71	2.56	2.8	0.002	0.47	0.0	0.04	13.22	0.00	2.210	4.60	0.00	3.6	96.3	0.1	0.72	0.69	0.84	3.32	2.8	0.004	0.60	0.0	0.04	15.74	0.01	2.525	3.65	1.84	3.7	96.2	0.1	0.88	0.89	0.64	0.84	3.12	13717	1766	4	0	0	0	0	logfile

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