Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z0Q	39711	2025-05-10	2024-04-10	2.6	2.77	2.61	2.8	0.002	0.49	0.0	0.04	13.18	0.00	2.194	6.89	0.00	3.0	96.9	0.1	0.58	0.61	0.71	2.60	2.8	0.002	0.54	0.0	0.04	15.82	0.00	2.613	5.57	1.27	3.5	96.3	0.1	0.90	0.39	0.60	0.72	2.30	6881	884	2	0	0	0	0	logfile
✔	8Z0o	39709	2025-05-14	2024-04-10	3.2	3.80	3.28	3.7	0.015	0.81	0.0	0.04	14.91	0.01	2.152	12.49	2.30	5.1	94.8	0.1	1.29	0.51	0.74	2.01	3.7	0.003	0.56	0.0	0.04	15.69	0.00	2.164	8.27	3.07	5.9	94.1	0.0	1.55	1.39	0.56	0.79	2.09	12296	1522	6	2	2	0	0	logfile
✔	8Z0R	39713	2025-05-15	2024-04-10	2.53	2.71	2.56	2.8	0.002	0.47	0.0	0.04	13.22	0.00	2.210	4.60	0.00	3.6	96.3	0.1	0.72	0.69	0.84	3.32	2.8	0.004	0.60	0.0	0.04	15.74	0.01	2.525	3.65	1.84	3.7	96.2	0.1	0.88	0.89	0.64	0.84	3.12	13717	1766	4	0	0	0	0	logfile
✔	8Z0L	39707	2025-05-22	2024-04-09	2.57	2.31	2.70	2.1	0.007	1.14	0.0	0.07	18.58	0.01	2.273	6.21	1.08	6.2	93.5	0.3	-2.96	0.83	0.85	4.18	2.1	0.006	0.68	0.0	0.05	19.29	0.01	2.477	3.70	2.11	4.9	95.1	0.0	-0.68	0.46	0.85	0.86	3.98	22858	2633	12	97	0	0	0	logfile
✔	9EYJ	50055	2025-05-10	2024-04-09	2.97	3.34	2.93	3.2	0.004	0.59	1.0	0.04	16.13	0.00	1.569	13.32	2.14	4.8	95.2	0.0	-0.70	0.70	0.72	2.62	3.2	0.004	0.61	0.0	0.04	16.46	0.00	2.575	11.48	3.48	4.8	95.2	0.0	-0.54	0.39	0.70	0.72	2.77	4334	576	3	4	0	0	0	logfile
✔	9BCS	44436	2025-05-10	2024-04-09	4.4	4.63	4.43	4.5	0.002	0.57	0.0	0.04	12.17	0.00	2.221	2.87	0.57	5.3	94.7	0.0	-0.54	0.60	0.78	—	4.5	0.002	0.64	0.0	0.04	10.48	0.00	2.281	2.24	0.00	7.1	92.9	0.0	0.67	0.51	0.62	0.78	—	5916	1038	4	0	2	0	0	logfile
✔	8Z0K	39706	2025-05-22	2024-04-09	2.51	2.29	2.59	2.1	0.007	1.10	0.0	0.06	18.24	0.01	1.824	5.59	1.52	5.5	93.8	0.7	-2.56	0.84	0.85	4.19	2.1	0.006	0.67	0.0	0.05	19.17	0.01	2.360	3.29	2.06	4.9	95.1	0.0	-0.50	1.15	0.86	0.86	4.06	23037	2644	12	102	0	0	0	logfile
✔	8Z0J	39705	2025-05-13	2024-04-09	3.48	3.76	3.50	3.7	0.003	0.59	0.0	0.04	18.69	0.01	2.242	5.50	0.55	6.7	93.3	0.0	-2.62	0.57	0.75	1.10	3.7	0.004	0.67	0.0	0.04	18.66	0.00	2.016	5.60	5.34	8.2	91.8	0.0	-2.17	0.32	0.68	0.83	1.34	10016	1270	4	0	4	0	0	logfile
✔	8Z0i	39704	2025-05-13	2024-04-09	3.45	3.71	3.44	3.7	0.004	0.61	0.0	0.04	19.11	0.00	2.173	6.90	0.74	8.3	91.7	0.0	-3.06	0.59	0.78	2.22	3.7	0.003	0.62	0.0	0.04	18.91	0.00	2.449	5.95	3.69	7.2	92.8	0.0	-1.92	0.25	0.68	0.84	1.65	10004	1268	4	0	4	0	0	logfile
✔	9BCo	44432	2025-05-10	2024-04-09	4.4	4.70	4.37	4.6	0.016	0.88	1.0	0.05	12.78	0.01	2.105	8.36	0.00	7.3	92.7	0.0	-1.99	0.75	0.73	—	4.6	0.002	0.63	0.0	0.04	11.23	0.00	2.338	2.85	0.00	4.7	95.3	0.0	0.21	0.71	0.76	0.75	—	6164	1038	4	0	2	0	0	logfile
✔	9BCP	44433	2025-05-09	2024-04-09	4.1	4.20	4.13	4.2	0.006	1.10	1.0	0.05	15.68	0.01	2.251	7.55	0.35	8.7	91.3	0.0	-2.81	0.70	0.75	—	4.2	0.003	0.66	0.0	0.04	14.44	0.00	2.359	4.05	0.35	7.4	92.6	0.0	-0.90	0.58	0.70	0.76	—	4162	618	5	0	2	1	0	logfile
✔	9BCN	44431	2025-05-10	2024-04-09	2.9	3.16	2.98	3.2	0.006	0.95	2.0	0.06	15.34	0.01	2.156	3.80	0.96	3.7	96.3	0.0	-0.99	0.72	0.85	4.67	3.2	0.003	0.74	0.0	0.04	15.79	0.00	2.540	3.57	1.28	2.0	98.0	0.0	0.73	1.14	0.70	0.85	3.48	6606	850	8	0	16	0	0	logfile
✔	9BCR	44435	2025-05-13	2024-04-09	3.26	3.89	3.27	3.7	0.005	0.74	0.0	0.05	17.05	0.01	2.168	9.53	1.42	5.3	94.6	0.1	0.18	0.78	0.85	2.01	3.7	0.004	0.63	0.0	0.04	16.96	0.00	2.500	7.85	3.20	5.0	95.0	0.0	0.62	1.60	0.76	0.85	2.39	10595	1368	4	0	0	0	0	logfile
✔	8Z0A	39700	2025-05-20	2024-04-09	2.84	3.13	2.97	3.1	0.004	0.53	0.0	0.04	13.59	0.00	2.236	7.90	0.00	2.7	97.3	0.0	0.56	0.73	0.82	3.15	3.2	0.003	0.51	0.0	0.04	15.92	0.00	2.583	6.30	1.19	2.3	97.7	0.0	1.10	0.91	0.73	0.86	2.96	20668	2544	8	0	0	0	0	logfile
✔	9EY1	50051	2025-05-18	2024-04-09	2.9	2.07	—	2.1	0.006	0.81	0.0	0.05	18.77	0.00	2.066	8.35	1.66	3.3	96.7	0.1	0.31	0.70	0.70	2.33	2.0	0.004	0.69	0.0	0.04	19.16	0.01	2.033	9.05	3.13	3.5	96.5	0.0	0.29	1.17	0.76	0.74	2.55	16769	2009	10	69	3	0	0	logfile
✔	9EY0	50050	2025-05-18	2024-04-09	2.78	2.62	—	3.0	0.006	0.56	1.0	0.04	17.62	0.00	1.995	4.46	0.18	2.7	97.3	0.0	1.57	0.91	0.89	3.36	3.0	0.003	0.63	0.0	0.04	18.15	0.00	1.996	6.25	1.41	2.2	97.8	0.0	1.27	1.09	0.89	0.88	3.03	16691	2008	10	65	4	0	0	logfile
✔	9BCV	44440	2025-05-11	2024-04-09	3.2	3.43	3.24	3.4	0.003	0.86	0.0	0.04	15.57	0.00	1.994	2.45	0.64	1.9	98.1	0.0	-0.32	0.64	0.79	2.82	3.4	0.002	0.61	0.0	0.03	14.87	0.00	2.028	2.02	6.11	1.7	98.3	0.0	-0.28	0.25	0.64	0.79	3.21	7729	422	12	0	907	0	0	logfile
✔	9BCL	44429	2025-05-10	2024-04-09	2.9	3.20	3.02	3.2	0.005	0.84	1.0	0.07	14.78	0.00	2.149	3.19	0.31	3.3	96.7	0.0	-1.41	0.67	0.82	4.31	3.2	0.005	0.76	0.0	0.05	15.01	0.00	2.478	3.95	1.24	2.7	97.3	0.0	0.10	0.35	0.70	0.86	3.96	6719	850	8	0	18	0	0	logfile
✔	8Z0F	39703	2025-05-19	2024-04-09	3.27	3.50	3.30	3.5	0.010	1.07	0.0	0.04	19.33	0.00	1.980	12.96	0.51	10.9	89.1	0.0	-2.49	0.59	0.75	0.86	3.5	0.004	0.84	0.0	0.04	18.99	0.00	1.979	9.60	5.54	10.6	89.4	0.0	-2.20	0.31	0.61	0.76	0.80	18066	1098	3	0	2	0	9062	logfile
✔	9BCQ	44434	2025-05-15	2024-04-09	3.1	3.30	3.12	3.3	0.006	0.76	1.0	0.07	14.49	0.01	2.199	3.67	0.00	3.7	96.3	0.0	-1.15	0.73	0.85	4.38	3.3	0.003	0.61	0.0	0.06	14.44	0.00	2.341	3.23	0.43	3.2	96.8	0.0	-0.14	0.33	0.71	0.84	3.74	13401	874	9	0	12	0	6466	logfile

• ← previous
• Page 66 of 642
• next →