Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BC7	44426	2025-05-17	2024-04-08	3.3	2.73	3.21	3.4	0.015	1.83	0.0	0.10	14.65	0.01	2.210	3.53	0.55	2.2	97.8	0.0	-1.65	0.52	0.66	4.43	3.4	0.002	0.59	0.0	0.04	16.58	0.00	2.525	5.35	0.97	3.5	96.5	0.0	1.99	0.65	0.63	0.77	2.99	15628	2024	8	0	16	0	0	logfile
✔	9EXH	50038	2025-05-13	2024-04-08	3.9	4.64	4.04	4.1	0.002	0.41	0.0	0.04	8.92	0.00	2.199	7.78	0.29	3.7	96.3	0.0	0.79	0.92	0.85	1.41	4.1	0.003	0.54	0.0	0.04	11.65	0.00	2.624	5.81	0.58	3.9	96.1	0.0	1.41	0.48	0.92	0.85	0.98	9728	1205	1	0	0	0	0	logfile
✔	9EXS	50048	2025-05-17	2024-04-08	3.28	4.23	3.43	3.9	0.012	1.63	0.0	0.09	12.22	0.02	1.879	0.00	0.37	2.1	97.9	0.0	0.19	0.83	0.76	3.45	3.9	0.002	0.56	0.0	0.04	13.53	0.00	2.199	3.31	0.37	1.6	98.4	0.0	2.28	0.75	0.82	0.79	2.91	15691	1004	3	0	1	0	7675	logfile
✔	9EXR	50047	2025-05-29	2024-04-08	2.49	2.61	2.56	2.6	0.011	0.88	0.0	0.06	14.32	0.00	0.561	10.38	0.00	4.1	95.9	0.0	-0.02	0.70	0.83	3.56	2.6	0.002	0.63	0.0	0.04	15.37	0.00	2.034	4.38	1.26	3.1	96.9	0.0	1.23	0.38	0.71	0.85	2.91	31952	4120	16	0	16	0	0	logfile
✔	9EXP	50043	2025-05-29	2024-04-08	2.85	3.16	2.90	3.2	0.009	0.70	0.0	0.04	11.97	0.00	1.987	5.64	0.00	3.8	96.2	0.0	0.27	0.64	0.83	3.73	3.2	0.002	0.55	0.0	0.04	14.12	0.00	2.028	5.24	0.68	3.5	96.5	0.0	0.81	0.80	0.61	0.83	3.09	32064	4136	16	0	16	0	0	logfile
✔	8YZJ	39695	2025-05-10	2024-04-07	2.95	2.28	3.00	2.1	0.017	0.99	0.0	0.06	14.00	0.01	2.265	9.77	0.29	5.0	94.8	0.3	-3.29	0.75	0.76	2.66	2.0	0.004	0.70	0.0	0.04	17.25	0.00	2.411	5.85	2.88	3.2	96.8	0.0	0.15	1.45	0.80	0.82	2.46	6389	789	2	0	0	0	0	logfile
✔	8YZi	39694	2025-05-18	2024-04-07	3.05	4.06	3.12	3.4	0.003	0.65	0.0	0.05	14.40	0.00	2.232	4.44	0.17	3.3	96.7	0.0	0.34	0.87	0.82	3.13	3.4	0.003	0.68	0.0	0.04	14.84	0.00	2.190	4.14	1.55	3.6	96.4	0.0	0.44	0.83	0.91	0.90	2.77	16699	2030	18	0	29	0	0	logfile
✔	9BC6	44425	2025-05-16	2024-04-07	2.5	2.14	2.43	2.4	0.012	1.77	0.0	0.09	12.25	0.01	2.247	2.87	0.56	2.7	97.3	0.0	-0.64	0.53	0.77	6.12	2.4	0.002	0.56	0.0	0.04	14.56	0.00	2.650	5.12	1.40	1.7	98.3	0.0	2.46	0.48	0.62	0.84	4.11	14972	1936	8	0	12	0	0	logfile
✔	8YZK	39696	2025-05-10	2024-04-07	3.4	2.39	3.43	1.7	0.003	0.76	0.0	0.04	18.28	0.01	2.181	13.45	1.07	8.9	91.1	0.0	-1.21	0.68	0.59	0.53	1.6	0.003	0.74	0.0	0.04	18.36	0.00	2.465	15.91	5.82	8.9	91.1	0.0	-0.99	0.90	0.69	0.63	0.18	6470	866	4	0	0	0	0	logfile
✔	9BBM	44422	2025-05-10	2024-04-06	3.2	3.01	3.09	3.2	0.012	2.05	4.0	0.11	13.73	0.01	2.513	0.00	0.51	12.7	82.4	4.9	-3.91	0.33	0.62	3.86	3.2	0.003	0.67	0.0	0.05	16.57	0.00	2.378	5.75	1.03	9.5	89.6	0.9	-3.34	1.32	0.35	0.73	4.18	6966	444	6	0	0	0	3558	logfile
✔	9BBL	44421	2025-05-13	2024-04-06	2.5	2.33	2.50	2.6	0.011	2.11	2.0	0.10	10.02	0.01	2.489	0.19	0.00	9.7	88.9	1.4	-2.48	0.27	0.65	5.75	22.0	0.005	0.70	0.0	0.05	16.94	0.00	2.430	3.27	0.85	8.8	91.2	0.0	-3.01	2.35	0.39	0.83	5.45	10395	666	9	0	0	0	5301	logfile
✔	8YZ6	39686	2025-05-24	2024-04-06	4.55	4.63	4.46	4.6	0.004	0.69	0.0	0.05	13.46	0.01	1.194	18.91	0.36	3.8	96.0	0.2	-0.97	0.50	0.60	—	4.5	0.003	0.68	0.0	0.05	13.37	0.01	2.246	13.97	0.04	5.0	94.9	0.1	-1.36	1.01	0.50	0.62	—	24972	3161	13	0	18	0	0	logfile
✔	8YZB	39688	2025-05-10	2024-04-06	3.29	3.29	3.39	1.8	0.003	0.54	1.0	0.04	7.28	0.00	2.242	2.62	1.43	2.2	97.8	0.0	-0.85	0.86	0.81	2.16	1.4	0.003	0.77	0.0	0.05	13.64	0.00	2.265	3.65	1.72	3.4	96.6	0.0	0.49	1.59	0.90	0.90	2.64	6448	792	2	0	0	0	0	logfile
✔	8YZD	39690	2025-05-10	2024-04-06	3.07	2.88	3.09	1.9	0.002	0.42	0.0	0.04	7.78	0.00	2.299	1.99	1.29	2.2	97.8	0.0	-1.69	0.87	0.87	2.54	1.5	0.005	0.67	0.0	0.04	13.94	0.00	2.349	2.31	2.44	3.4	96.6	0.0	0.29	0.65	0.90	0.92	2.59	6436	792	2	0	0	0	0	logfile
✔	9EWY	50026	2025-05-10	2024-04-05	3.1	2.60	3.12	3.2	0.004	0.53	0.0	0.04	15.97	0.00	2.208	3.47	0.00	1.9	98.0	0.1	2.61	0.69	0.87	2.95	3.1	0.003	0.49	0.0	0.04	17.04	0.00	2.573	3.55	1.62	1.6	98.3	0.1	2.57	0.28	0.68	0.88	2.75	6496	815	2	0	3	0	0	logfile
✔	9EWZ	50027	2025-05-13	2024-04-05	2.22	3.01	2.28	2.8	0.003	0.50	0.0	0.04	15.89	0.00	2.190	3.54	0.29	3.8	96.2	0.0	0.75	0.84	0.88	4.79	2.8	0.003	0.56	0.0	0.04	17.81	0.00	2.211	3.39	0.96	4.2	95.8	0.0	1.50	1.10	0.84	0.89	3.95	10780	1205	4	50	2	0	0	logfile
✔	9EX7	50032	2025-05-21	2024-04-05	2.91	3.43	—	2.0	0.003	0.47	0.0	0.04	9.80	0.00	1.950	4.81	0.71	4.7	95.3	0.0	0.45	0.88	0.79	3.05	1.9	0.004	0.60	0.0	0.04	12.82	0.00	1.889	4.47	1.07	5.4	94.6	0.0	0.33	1.08	0.91	0.87	2.78	21055	2596	6	0	3	0	0	logfile
✔	9EX6	50031	2025-05-15	2024-04-05	2.35	2.22	2.31	2.3	0.006	1.19	0.0	0.09	13.57	0.01	2.343	2.39	0.37	2.3	97.7	0.0	-0.45	0.68	0.85	5.72	2.3	0.004	0.68	0.0	0.05	16.59	0.00	2.611	2.16	2.23	1.9	98.1	0.0	1.24	1.12	0.70	0.86	5.19	13115	1550	15	0	35	20	0	logfile
✔	9BAZ	44415	2025-05-11	2024-04-05	2.76	3.45	2.80	3.3	0.004	0.68	0.0	0.04	16.56	0.00	2.117	12.04	0.50	3.2	96.8	0.0	0.19	0.71	0.71	2.69	3.3	0.003	0.65	0.0	0.04	16.89	0.00	2.427	9.28	3.02	3.5	96.5	0.0	0.18	0.28	0.71	0.72	2.43	8283	1089	4	0	2	0	0	logfile
✔	9EWX	50025	2025-05-23	2024-04-05	3.17	2.84	3.08	3.1	0.002	0.42	0.0	0.04	17.57	0.00	2.318	3.78	0.88	0.7	99.3	0.0	2.80	0.68	0.88	2.05	3.0	0.002	0.49	0.0	0.05	16.67	0.00	2.549	5.54	3.77	1.3	98.7	0.0	2.77	0.49	0.68	0.89	1.90	23989	3289	23	0	0	0	0	logfile

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