Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UNR	42414	2024-06-25	2023-10-19	3.4	3.68	3.45	3.7	0.005	0.79	0.0	0.05	13.75	0.00	1.950	4.40	0.00	2.3	97.7	0.0	0.99	0.66	0.86	3.46	3.7	0.002	0.49	0.0	0.04	14.80	0.00	2.080	3.06	2.85	2.0	98.0	0.0	1.30	0.92	0.65	0.87	2.79	6670	919	6	0	2	2	0	logfile
✔	8UMX	42387	2024-06-25	2023-10-18	4.0	5.63	3.86	4.0	0.003	0.77	0.0	0.04	17.12	0.00	2.173	17.66	0.50	5.0	94.9	0.1	-0.01	0.52	0.81	—	4.0	0.002	0.73	0.0	0.04	17.36	0.00	2.157	16.08	2.39	4.1	95.7	0.1	0.58	1.74	0.54	0.85	—	7166	906	6	0	0	0	0	logfile
✔	8UMV	42385	2024-06-30	2023-10-18	2.75	2.95	2.82	3.0	0.003	0.68	0.0	0.05	15.43	0.01	2.062	7.08	1.69	2.2	97.8	0.0	-1.56	0.71	0.83	3.28	3.0	0.004	0.59	0.0	0.04	17.65	0.00	1.900	9.79	3.12	2.1	97.9	0.0	0.64	0.43	0.73	0.87	3.05	21860	2647	15	47	9	0	0	logfile
✔	8UMW	42386	2024-06-30	2023-10-18	2.93	3.19	3.06	3.2	0.004	0.69	1.0	0.05	15.13	0.01	2.045	6.48	1.90	2.5	97.5	0.0	-1.73	0.73	0.83	2.90	3.2	0.003	0.59	0.0	0.04	17.76	0.00	1.910	9.42	2.73	2.2	97.8	0.0	0.71	1.02	0.74	0.87	2.82	21860	2647	15	47	9	0	0	logfile
✔	8UMT	42383	2024-06-30	2023-10-18	3.33	3.59	3.44	3.5	0.004	0.75	0.0	0.05	14.62	0.01	2.048	9.08	4.14	3.6	96.3	0.0	-2.12	0.75	0.71	1.12	3.5	0.003	0.71	0.0	0.04	16.46	0.00	1.884	15.85	3.75	4.0	96.0	0.0	-0.41	1.77	0.77	0.75	0.78	20697	2625	12	0	7	0	0	logfile
✔	8UMP	42381	2024-06-30	2023-10-18	2.92	3.27	3.11	3.3	0.007	0.74	0.0	0.04	19.06	0.01	2.226	7.20	0.69	0.4	99.6	0.0	1.18	0.67	0.87	4.31	3.3	0.003	0.49	0.0	0.04	18.83	0.00	2.243	8.01	2.66	1.0	99.0	0.0	3.61	0.37	0.69	0.88	3.87	21432	2724	24	0	0	0	0	logfile
✔	8UN7	42394	2024-06-28	2023-10-18	3.55	3.01	3.15	3.2	0.004	0.75	4.0	0.05	18.14	0.00	1.628	6.45	4.72	12.7	86.4	0.9	-4.64	0.71	0.83	2.45	3.2	0.002	0.61	0.0	0.04	17.80	0.00	2.185	5.62	5.42	14.5	85.5	0.0	-4.39	0.90	0.74	0.83	2.58	14296	1752	16	0	24	0	0	logfile
✔	8UMR	42382	2024-06-29	2023-10-18	4.42	5.02	4.78	4.6	0.004	0.82	0.0	0.05	12.52	0.01	2.052	27.72	0.00	2.7	97.3	0.0	-0.03	0.83	0.77	—	4.6	0.003	0.77	0.0	0.04	13.35	0.01	2.027	24.85	0.00	4.0	96.0	0.0	-0.02	1.13	0.84	0.82	—	18615	2364	21	0	0	0	0	logfile
✔	8UMY	42388	2024-06-30	2023-10-18	2.83	3.06	2.93	3.1	0.003	0.63	1.0	0.04	15.23	0.01	2.080	6.09	2.34	2.2	97.8	0.0	-1.84	0.69	0.83	2.98	3.1	0.002	0.59	0.0	0.04	17.56	0.00	1.942	9.03	2.86	2.0	98.0	0.0	0.41	0.54	0.74	0.87	3.04	21860	2647	15	47	9	0	0	logfile
✔	8WTD	37832	2024-06-25	2023-10-18	3.06	3.33	3.05	3.4	0.005	0.90	7.0	0.05	18.48	0.00	2.232	8.87	0.72	5.3	93.9	0.8	-0.02	0.53	0.80	1.75	3.4	0.004	0.58	0.0	0.04	17.94	0.00	2.133	8.40	2.31	5.2	94.7	0.1	0.42	0.97	0.60	0.85	2.30	6456	790	3	0	4	0	0	logfile
✔	8QVW	18674	2024-06-24	2023-10-18	3.0	3.25	3.07	3.2	0.003	0.60	0.0	0.04	18.02	0.00	2.155	14.69	0.23	4.3	95.7	0.0	1.25	0.75	0.76	1.70	3.2	0.003	0.69	0.0	0.04	18.59	0.00	2.180	13.80	3.00	5.0	95.0	0.0	1.13	1.22	0.73	0.76	2.13	3918	492	2	0	0	0	0	logfile
✔	8UMU	42384	2024-06-30	2023-10-18	3.16	3.41	3.26	3.4	0.006	1.02	4.0	0.06	17.81	0.01	2.104	8.60	0.84	2.8	97.2	0.0	-1.89	0.71	0.71	1.14	3.4	0.004	0.69	0.0	0.04	18.00	0.00	1.929	16.88	3.92	3.6	96.4	0.0	-0.06	0.51	0.72	0.74	0.93	20521	2603	12	0	7	0	0	logfile
✔	8UN0	42389	2024-06-30	2023-10-18	3.0	3.26	3.12	3.2	0.004	0.80	0.0	0.05	18.78	0.01	2.068	6.27	0.56	3.1	96.9	0.0	-1.93	0.75	0.82	1.88	3.2	0.003	0.61	0.0	0.04	18.97	0.00	1.924	9.69	2.16	2.8	97.2	0.0	0.59	0.98	0.76	0.85	2.07	21860	2647	15	47	9	0	0	logfile
✔	8UN1	42390	2024-06-30	2023-10-18	3.9	4.40	4.25	4.3	0.014	1.17	0.0	0.05	16.24	0.01	2.085	21.08	0.47	5.1	94.9	0.0	-0.76	0.71	0.65	0.23	4.3	0.004	0.82	0.0	0.05	17.18	0.01	2.091	18.02	4.30	4.6	95.4	0.0	-0.11	2.91	0.75	0.75	0.54	22091	2904	21	0	0	0	0	logfile
✔	8UMD	42376	2024-06-25	2023-10-17	3.6	4.61	3.60	3.7	0.003	0.72	0.0	0.04	16.78	0.01	2.098	13.27	0.50	4.9	94.8	0.3	0.54	0.50	0.80	0.85	3.7	0.003	0.76	0.0	0.04	17.13	0.00	2.101	16.96	3.26	4.9	94.8	0.3	0.75	1.76	0.51	0.85	0.71	7201	911	6	0	0	0	0	logfile
✔	8WSS	37823	2024-06-25	2023-10-17	3.01	2.86	2.95	3.1	0.002	0.46	0.0	0.04	9.95	0.00	2.082	6.49	0.43	2.3	97.7	0.0	1.40	0.71	0.83	2.49	3.1	0.003	0.58	0.0	0.04	14.28	0.00	2.148	9.36	2.45	3.4	96.4	0.2	0.83	0.65	0.72	0.87	2.89	8797	1143	6	0	0	0	0	logfile
✔	8WST	37824	2024-06-25	2023-10-17	2.4	2.03	2.39	2.4	0.002	0.45	1.0	0.04	8.87	0.00	2.158	4.97	0.22	3.1	96.9	0.0	2.41	0.64	0.75	3.44	2.3	0.003	0.60	0.0	0.04	14.84	0.00	2.157	6.61	2.55	4.1	95.8	0.1	1.30	1.45	0.65	0.81	3.79	8286	1055	6	0	0	0	0	logfile
✔	8UMC	42375	2024-06-25	2023-10-17	2.5	2.12	2.52	1.9	0.005	0.68	0.0	0.05	17.53	0.01	2.045	9.69	1.16	2.9	96.9	0.1	-0.80	0.82	0.81	3.65	1.8	0.004	0.63	0.0	0.04	18.06	0.01	2.121	12.29	3.75	2.5	97.5	0.0	0.13	0.38	0.82	0.81	3.23	7198	890	6	0	2	0	0	logfile
✔	8WRL	37779	2024-06-25	2023-10-15	3.36	3.59	3.33	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.7	0.003	0.51	0.0	0.04	17.32	0.00	2.222	8.85	4.18	3.7	96.3	0.0	0.43	0.34	0.52	0.77	1.34	6472	790	4	0	5	0	0	logfile
✔	8WRH	37776	2024-06-25	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.52	0.0	0.04	17.71	0.00	2.098	7.68	1.30	5.0	95.0	0.0	0.95	0.88	0.59	0.82	1.94	6459	790	3	0	4	0	0	logfile

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