Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QTD	18649	2024-06-24	2023-10-12	3.6	3.77	3.60	3.8	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.7	0.004	0.61	0.0	0.04	13.98	0.00	2.133	11.18	3.51	5.0	95.0	0.0	-0.29	0.92	0.56	0.80	2.68	3219	413	3	0	0	0	0	logfile
✔	8WQW	37756	2024-06-29	2023-10-12	3.27	2.51	3.28	1.9	0.005	0.70	0.0	0.05	13.42	0.01	2.125	9.31	0.10	5.2	94.8	0.0	-0.92	0.71	0.67	2.47	1.8	0.003	0.66	0.0	0.05	15.34	0.00	2.121	10.33	3.04	5.6	94.4	0.0	-0.85	1.58	0.74	0.71	1.89	8972	1174	8	0	5	0	0	logfile
✔	8WQR	37752	2024-06-26	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.004	0.69	0.0	0.05	14.11	0.00	2.144	15.84	2.60	8.4	91.4	0.1	-2.82	0.45	0.82	0.69	1.46	9681	1415	2	0	0	0	0	logfile
✔	8WQD	37740	2024-06-24	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.004	1.08	1.0	0.05	16.68	0.00	2.237	11.99	2.55	7.1	92.9	0.0	0.58	0.30	0.67	0.83	1.88	5046	641	2	0	0	0	0	logfile
✔	8QSQ	18639	2024-06-25	2023-10-11	3.7	4.53	6.42	3.8	0.002	0.46	0.0	0.04	10.95	0.00	2.268	4.09	1.15	3.2	96.8	0.0	-1.43	0.64	0.73	0.69	3.6	0.003	0.68	0.0	0.04	13.98	0.00	2.120	20.61	2.30	3.8	96.2	0.0	0.46	1.83	0.64	0.73	0.97	6512	791	3	0	6	0	0	logfile
✔	8WQi	37746	2024-06-24	2023-10-11	3.5	3.71	3.53	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.004	0.67	0.0	0.04	16.80	0.00	2.077	14.72	2.37	10.5	89.5	0.0	-0.75	0.52	0.66	0.82	0.91	5074	644	2	0	0	0	0	logfile
✔	8QSK	18634	2024-06-25	2023-10-10	3.3	3.77	3.34	3.6	0.003	0.63	0.0	0.04	12.96	0.01	2.235	7.41	1.59	6.9	92.9	0.2	1.79	0.77	0.75	0.74	3.6	0.003	0.62	0.0	0.04	14.51	0.00	2.185	7.87	3.41	7.2	92.8	0.0	2.18	0.86	0.79	0.79	1.62	8506	1046	4	0	16	0	0	logfile
✔	8WPF	37715	2024-06-29	2023-10-10	3.0	3.03	2.90	3.0	0.009	1.14	0.0	0.06	17.29	0.01	2.020	6.69	0.00	2.9	97.1	0.0	-1.58	0.70	0.72	2.81	3.0	0.004	0.62	0.0	0.04	18.98	0.00	1.923	17.54	2.00	3.3	96.7	0.0	-0.02	0.57	0.75	0.82	3.37	16896	1908	11	73	1	0	0	logfile
✔	8WPP	37722	2024-06-29	2023-10-10	3.1	3.23	3.06	3.2	0.005	0.84	0.0	0.05	17.00	0.01	2.245	5.50	0.06	3.0	97.0	0.0	-1.85	0.70	0.74	2.73	3.2	0.003	0.60	1.0	0.04	18.31	0.00	2.171	14.18	1.77	3.4	96.6	0.0	0.16	0.51	0.72	0.82	2.82	16826	1909	9	69	0	0	0	logfile
✔	8UiN	42300	2024-06-25	2023-10-10	3.86	4.18	3.93	4.1	0.003	0.53	0.0	0.04	14.53	0.00	2.178	9.14	0.07	3.7	96.2	0.1	0.38	0.78	0.79	1.85	4.1	0.004	0.62	0.0	0.04	15.97	0.00	2.201	10.95	2.98	4.1	95.9	0.1	0.35	0.39	0.81	0.82	1.57	28249	3746	12	0	5	0	0	logfile
✔	8WPU	37724	2024-06-29	2023-10-10	3.1	2.87	—	3.2	0.004	0.59	0.0	0.04	16.87	0.00	2.163	9.80	0.00	4.6	95.4	0.0	-0.69	0.76	0.82	2.08	3.2	0.004	0.59	0.0	0.04	16.24	0.00	2.125	10.35	4.84	5.5	94.5	0.0	-0.77	0.32	0.76	0.83	2.23	18794	2455	10	0	22	0	0	logfile
✔	8QSM	18636	2024-06-24	2023-10-10	3.69	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.87	0.0	0.04	15.54	0.00	2.035	14.93	3.49	3.5	96.5	0.0	1.79	1.46	0.56	0.78	1.37	3579	464	1	0	0	0	0	logfile
✔	8QSL	18635	2024-06-25	2023-10-10	2.81	3.65	2.98	3.5	0.004	0.67	0.0	0.04	15.58	0.00	1.968	13.05	0.12	8.7	91.3	0.0	1.51	0.61	0.78	1.49	3.5	0.004	0.91	0.0	0.05	15.65	0.00	2.186	12.59	3.17	7.1	92.9	0.0	1.06	1.17	0.58	0.77	1.09	8506	1046	4	0	16	0	0	logfile
✔	8QSN	18637	2024-06-24	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.87	0.0	0.04	15.50	0.00	2.062	16.31	2.68	3.5	96.5	0.0	1.78	1.45	0.56	0.77	1.37	3579	464	1	0	0	0	0	logfile
✔	8UiP	42301	2024-06-24	2023-10-10	4.3	2.81	4.26	5.6	0.004	0.79	0.0	0.04	16.55	0.01	2.087	25.91	0.00	13.1	86.9	0.0	-2.49	0.41	0.55	—	6.5	0.003	0.75	0.0	0.04	14.27	0.00	2.242	21.73	0.00	9.1	90.9	0.0	-2.42	2.11	0.41	0.51	—	2316	303	3	0	0	0	0	logfile
✔	8Ui9	42289	2024-06-30	2023-10-10	3.5	3.72	3.53	3.6	0.005	0.88	0.0	0.05	17.19	0.01	1.992	8.23	0.78	3.2	96.8	0.0	-1.22	0.76	0.74	1.02	3.6	0.003	0.64	0.0	0.04	17.62	0.00	2.008	14.25	3.00	3.2	96.8	0.0	0.16	0.50	0.76	0.73	1.02	21836	2760	13	0	9	0	0	logfile
✔	8WPK	37717	2024-06-29	2023-10-10	2.7	2.77	2.62	2.7	0.007	0.88	0.0	0.06	17.19	0.01	2.082	5.65	0.00	2.8	97.2	0.1	-1.51	0.73	0.77	3.55	2.7	0.005	0.62	0.0	0.04	18.81	0.00	1.848	13.28	2.17	2.6	97.4	0.0	0.45	0.96	0.76	0.82	3.83	16854	1909	11	70	1	0	0	logfile
✔	8Ui8	42288	2024-06-30	2023-10-10	3.1	3.26	3.14	3.2	0.005	0.85	0.0	0.05	17.83	0.01	2.003	7.70	0.91	2.5	97.5	0.0	-1.06	0.77	0.86	2.28	3.2	0.006	0.65	0.0	0.04	17.87	0.00	1.856	13.53	3.31	3.0	97.0	0.0	0.42	0.38	0.78	0.87	2.50	19822	2499	12	0	8	0	0	logfile
✔	8WPE	37714	2024-06-29	2023-10-10	2.7	2.83	2.70	2.8	0.007	0.98	2.0	0.06	17.15	0.01	2.147	4.40	0.00	2.9	97.0	0.1	-1.50	0.64	0.64	2.96	2.8	0.004	0.62	0.0	0.04	18.89	0.00	1.950	14.48	2.24	3.1	96.7	0.3	0.34	1.94	0.72	0.78	3.59	16745	1898	11	69	1	0	0	logfile
✔	8Ui7	42287	2024-06-30	2023-10-10	4.2	4.65	4.37	4.2	0.004	0.97	0.0	0.05	14.14	0.01	1.992	10.65	0.04	3.4	96.6	0.0	-1.37	0.85	0.77	—	4.2	0.004	0.70	0.0	0.04	14.14	0.00	1.803	21.00	0.00	3.7	96.3	0.0	0.01	0.96	0.86	0.78	—	21831	2760	13	0	8	0	0	logfile

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