Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WPU	37724	2024-06-29	2023-10-10	3.1	2.87	—	3.2	0.004	0.59	0.0	0.04	16.87	0.00	2.163	9.80	0.00	4.6	95.4	0.0	-0.69	0.76	0.82	2.08	3.2	0.004	0.59	0.0	0.04	16.24	0.00	2.125	10.35	4.84	5.5	94.5	0.0	-0.77	0.32	0.76	0.83	2.23	18794	2455	10	0	22	0	0	logfile
✔	8Ui7	42287	2024-06-30	2023-10-10	4.2	4.65	4.37	4.2	0.004	0.97	0.0	0.05	14.14	0.01	1.992	10.65	0.04	3.4	96.6	0.0	-1.37	0.85	0.77	—	4.2	0.004	0.70	0.0	0.04	14.14	0.00	1.803	21.00	0.00	3.7	96.3	0.0	0.01	0.96	0.86	0.78	—	21831	2760	13	0	8	0	0	logfile
✔	8UHF	42279	2024-06-27	2023-10-09	3.8	3.77	—	1.7	0.002	0.49	0.0	0.04	12.21	0.00	2.126	10.07	0.00	3.0	97.0	0.0	-1.49	0.62	0.79	0.57	1.6	0.003	0.78	0.0	0.04	15.72	0.00	2.146	18.48	2.99	3.7	96.3	0.0	0.18	0.89	0.63	0.80	0.04	12411	1739	9	0	0	0	0	logfile
✔	8WP9	37713	2024-06-30	2023-10-09	2.49	2.89	2.62	2.9	0.005	0.95	0.0	0.06	15.19	0.01	2.315	2.53	1.00	0.9	99.1	0.0	1.51	0.64	0.73	1.41	2.8	0.003	0.58	0.0	0.05	18.85	0.00	2.227	3.97	3.29	1.0	99.0	0.0	2.50	1.29	0.72	0.88	2.76	21432	2760	24	0	0	0	0	logfile
✔	8WoX	37701	2024-06-25	2023-10-08	2.75	2.45	3.23	2.2	0.003	0.53	0.0	0.04	13.94	0.00	2.099	4.19	0.00	4.3	95.7	0.0	0.02	0.77	0.83	3.39	2.3	0.005	0.65	0.0	0.04	16.20	0.00	2.108	7.98	3.08	5.4	94.6	0.0	0.08	1.00	0.77	0.84	3.36	6348	782	4	0	2	0	0	logfile
✔	8UHB	42268	2024-06-28	2023-10-08	3.35	4.22	3.36	3.8	0.004	0.62	0.0	0.04	14.11	0.00	2.015	9.46	0.00	5.9	94.1	0.0	-1.42	0.70	0.72	2.21	3.8	0.003	0.57	0.0	0.04	14.96	0.00	2.059	8.86	1.11	5.1	94.9	0.0	0.12	0.79	0.72	0.80	1.90	16561	1075	6	0	1	0	8144	logfile
✔	8WP0	37705	2024-06-26	2023-10-08	3.4	3.57	3.31	3.5	0.005	1.11	2.0	0.06	11.22	0.01	1.379	2.88	0.00	7.8	92.2	0.0	-6.50	0.67	0.82	3.23	3.5	0.003	0.66	0.0	0.04	14.44	0.00	2.038	5.81	1.53	7.2	92.8	0.0	-2.83	0.66	0.67	0.85	2.23	9372	1217	2	0	4	0	0	logfile
✔	8WoZ	37703	2024-06-25	2023-10-08	3.25	2.47	3.32	2.2	0.003	0.70	1.0	0.04	16.32	0.01	2.147	10.00	0.15	5.8	94.2	0.0	-0.58	0.75	0.72	1.58	2.1	0.003	0.67	0.0	0.04	17.08	0.01	2.147	8.53	2.23	6.3	93.7	0.0	-0.20	0.43	0.76	0.75	1.18	6244	768	3	0	1	0	0	logfile
✔	8WoQ	37695	2024-06-26	2023-10-07	2.85	3.57	2.89	3.4	0.004	0.82	0.0	0.05	15.76	0.01	2.046	7.66	3.96	4.8	95.1	0.1	1.00	0.65	0.84	3.05	3.4	0.003	0.72	0.0	0.04	14.90	0.00	2.025	6.69	1.55	4.5	95.4	0.1	1.14	0.89	0.65	0.84	3.09	11218	1294	10	0	35	4	0	logfile
✔	8WoM	37692	2024-06-26	2023-10-07	3.5	3.76	3.53	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.002	0.63	0.0	0.04	13.91	0.00	2.164	5.39	1.94	7.0	93.0	0.0	-3.03	0.72	0.66	0.82	1.77	9348	1217	2	0	1	0	0	logfile
✔	8QRH	18614	2024-06-27	2023-10-07	3.6	3.69	3.47	3.7	0.003	0.72	0.0	0.05	12.21	0.01	2.255	2.66	0.00	3.6	96.4	0.0	-0.83	0.58	0.81	2.89	3.7	0.003	0.72	0.0	0.04	15.06	0.00	2.178	9.67	2.36	4.1	95.9	0.0	-0.18	0.73	0.60	0.82	2.34	12951	1689	9	0	3	0	0	logfile
✔	8WoR	37696	2024-06-26	2023-10-07	2.66	3.15	2.79	3.1	0.004	0.64	0.0	0.04	15.74	0.01	1.928	22.33	5.08	3.5	96.4	0.2	1.60	0.56	0.78	2.67	3.1	0.005	0.93	1.0	0.05	15.14	0.00	1.898	7.18	3.79	4.7	95.1	0.2	0.85	0.90	0.64	0.84	3.02	11218	1294	10	0	35	4	0	logfile
✔	8WoT	37698	2024-06-26	2023-10-07	3.18	3.73	3.22	3.7	0.003	0.52	0.0	0.04	17.95	0.00	2.020	30.44	0.27	5.3	94.7	0.0	1.30	0.67	0.84	2.00	3.7	0.006	0.75	0.0	0.05	16.55	0.00	2.145	11.07	3.71	6.8	93.0	0.2	0.11	0.30	0.67	0.84	2.31	10672	1272	8	0	22	0	0	logfile
✔	8WoS	37697	2024-06-26	2023-10-07	3.37	3.88	3.39	3.8	0.003	0.55	0.0	0.04	18.35	0.00	1.943	39.41	0.35	6.4	93.6	0.0	1.07	0.65	0.80	1.91	3.8	0.004	0.70	0.0	0.05	17.23	0.00	2.091	10.46	4.24	6.0	93.9	0.2	0.37	0.93	0.65	0.80	1.79	10672	1272	8	0	22	0	0	logfile
✔	8Woi	37690	2024-06-26	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.003	0.66	0.0	0.04	13.82	0.00	2.220	5.88	1.42	8.2	91.8	0.0	-2.70	0.64	0.68	0.85	2.53	9324	1217	1	0	0	0	0	logfile
✔	8Woo	37694	2024-06-26	2023-10-07	3.9	4.05	3.88	4.0	0.005	1.14	7.0	0.08	13.30	0.01	1.870	6.21	0.00	7.3	92.7	0.0	-6.18	0.64	0.81	2.72	4.0	0.003	0.67	0.0	0.04	15.15	0.00	2.087	7.38	2.45	6.3	93.7	0.0	-3.04	0.80	0.65	0.82	1.43	9412	1217	2	0	5	0	0	logfile
✔	8WNP	37670	2024-06-28	2023-10-06	3.1	3.37	3.16	3.4	0.024	1.04	0.0	0.04	14.69	0.01	1.951	6.73	0.38	7.1	92.8	0.1	-1.41	0.58	0.65	1.74	3.4	0.006	0.84	0.0	0.05	16.55	0.01	1.986	13.06	5.57	8.5	91.4	0.1	-1.66	0.82	0.61	0.70	1.82	14142	1822	10	0	2	0	0	logfile
✔	8WNU	37673	2024-06-28	2023-10-06	3.8	4.07	3.82	4.1	0.003	0.58	0.0	0.04	15.01	0.00	1.960	9.85	0.13	8.0	91.8	0.2	-1.09	0.69	0.63	0.95	4.1	0.005	0.97	0.0	0.05	16.83	0.00	2.053	15.60	4.23	9.4	90.4	0.2	-1.55	1.19	0.71	0.72	1.07	14152	1824	10	0	2	0	0	logfile
✔	8Wo7	37681	2024-06-25	2023-10-06	2.9	3.17	2.85	3.2	0.007	0.69	0.0	0.04	13.01	0.00	2.107	7.94	0.00	2.7	97.3	0.0	1.23	0.64	0.86	2.77	3.2	0.003	0.57	0.0	0.04	15.01	0.00	2.153	7.63	1.75	3.7	96.3	0.0	2.04	0.35	0.62	0.86	2.20	8118	1080	4	0	4	0	0	logfile
✔	8WNY	37675	2024-06-25	2023-10-06	3.5	3.74	3.44	3.8	0.003	0.67	0.0	0.06	15.85	0.00	2.225	7.57	0.39	2.8	97.2	0.0	1.28	0.63	0.78	1.63	3.7	0.003	0.57	0.0	0.04	16.34	0.00	2.226	7.09	3.48	3.6	96.4	0.0	2.19	0.33	0.65	0.78	1.47	7233	924	4	0	5	0	0	logfile

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