Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WNW	37674	2024-06-24	2023-10-06	3.5	3.04	3.38	3.4	0.013	1.77	2.0	0.11	13.59	0.01	2.500	4.92	2.31	1.8	98.2	0.0	2.30	0.43	0.69	2.59	3.3	0.002	0.55	0.0	0.03	15.17	0.00	2.349	8.79	1.54	1.2	98.8	0.0	1.67	0.59	0.48	0.74	2.89	1400	173	2	0	3	1	0	logfile
✔	8QR0	18610	2024-06-27	2023-10-06	2.5	2.61	2.54	2.6	0.014	1.67	10.0	0.09	16.28	0.02	2.361	5.64	4.26	1.1	98.9	0.0	-1.18	0.72	0.92	5.12	2.6	0.002	0.58	0.0	0.04	15.24	0.00	2.238	5.90	1.02	1.6	98.4	0.0	2.11	0.34	0.71	0.89	3.46	11598	1360	15	0	41	145	0	logfile
✔	8WNT	37672	2024-06-25	2023-10-06	3.42	3.69	3.43	3.7	0.004	0.67	0.0	0.04	16.76	0.00	2.232	8.37	0.77	5.6	94.2	0.2	0.29	0.60	0.76	1.32	3.7	0.003	0.66	0.0	0.04	16.77	0.00	2.160	10.21	3.46	5.8	94.2	0.0	1.26	1.15	0.59	0.77	0.96	7309	933	5	0	5	0	0	logfile
✔	8WNS	37671	2024-06-25	2023-10-06	3.42	3.80	3.55	3.7	0.003	0.65	0.0	0.04	16.66	0.00	2.207	10.68	0.39	4.0	96.0	0.0	1.29	0.64	0.77	1.75	3.7	0.003	0.64	0.0	0.04	16.99	0.00	2.163	10.75	3.61	4.3	95.7	0.0	1.66	0.33	0.62	0.78	1.34	7226	924	3	0	4	0	0	logfile
✔	8UGY	42241	2024-06-25	2023-10-06	3.31	3.49	3.30	3.5	0.003	0.56	0.0	0.04	14.65	0.00	2.138	7.35	0.00	2.7	97.2	0.1	0.36	0.63	0.79	2.31	3.5	0.003	0.52	0.0	0.04	14.94	0.00	2.158	8.42	2.43	2.9	96.9	0.1	0.77	1.11	0.64	0.82	2.16	6970	864	5	0	6	1	0	logfile
✔	8UH3	42245	2024-06-25	2023-10-06	3.31	3.52	3.29	3.5	0.003	0.57	0.0	0.04	14.49	0.00	2.196	10.84	0.11	2.7	97.3	0.0	0.42	0.68	0.79	2.84	3.5	0.003	0.58	0.0	0.04	15.81	0.00	2.158	11.12	2.54	2.7	97.3	0.0	0.59	2.18	0.68	0.81	2.28	8759	1098	7	0	5	1	0	logfile
✔	8QQU	18605	2024-06-26	2023-10-06	2.9	3.10	2.97	3.1	0.004	0.67	0.0	0.05	13.97	0.00	2.111	1.46	0.00	3.5	96.5	0.0	0.03	0.64	0.86	3.91	3.1	0.003	0.61	0.0	0.04	18.25	0.00	2.256	6.80	2.15	2.8	97.2	0.0	0.90	1.39	0.66	0.88	3.32	10715	1273	4	32	0	0	0	logfile
✔	8WMQ	37658	2024-06-28	2023-10-04	3.3	2.84	3.57	3.5	0.004	1.07	0.0	0.04	14.04	0.01	2.060	5.60	0.00	3.3	96.7	0.0	0.89	0.62	0.80	1.20	3.5	0.004	1.01	0.0	0.04	14.58	0.01	1.949	6.15	1.28	6.4	93.6	0.0	0.82	0.99	0.63	0.84	1.48	16348	1080	6	0	6	0	8208	logfile
✔	8QQi	18592	2024-06-28	2023-10-04	2.9	3.20	2.96	3.2	0.005	0.66	0.0	0.04	13.26	0.01	2.370	1.17	0.13	4.6	95.4	0.0	-2.86	0.78	0.85	3.64	3.2	0.002	0.52	0.0	0.04	17.04	0.00	2.196	2.95	1.94	3.7	96.3	0.0	-0.18	0.63	0.74	0.84	3.08	15652	1832	10	52	4	0	0	logfile
✔	8WMH	37652	2024-06-27	2023-10-03	2.6	2.23	2.67	1.8	0.003	0.54	0.0	0.04	19.42	0.00	2.196	9.02	0.36	4.1	95.9	0.0	-0.02	0.60	0.62	2.31	1.8	0.004	0.62	0.0	0.04	20.35	0.00	2.176	9.96	1.63	4.7	95.3	0.0	-0.21	1.20	0.69	0.69	2.23	12942	1198	4	141	0	0	0	logfile
✔	8WMi	37653	2024-06-26	2023-10-03	3.53	4.01	3.72	3.9	0.003	0.66	0.0	0.04	16.40	0.00	2.226	3.76	0.00	5.3	94.7	0.0	-1.01	0.74	0.77	1.61	3.9	0.003	0.58	0.0	0.04	17.53	0.00	2.184	8.47	1.31	6.3	93.7	0.0	-0.53	0.44	0.76	0.79	2.09	10763	1237	3	39	4	0	0	logfile
✔	8WMC	37649	2024-06-29	2023-10-03	2.9	3.27	3.05	3.3	0.004	0.68	0.0	0.04	14.80	0.00	2.108	1.47	0.00	2.6	97.4	0.0	-0.05	0.70	0.83	3.00	3.3	0.002	0.51	0.0	0.04	16.98	0.00	2.191	4.03	1.62	2.8	97.2	0.0	0.34	0.39	0.69	0.84	2.61	16929	1983	4	38	4	0	0	logfile
✔	8UF7	42185	2024-06-24	2023-10-03	3.2	2.40	3.23	2.0	0.005	0.70	0.0	0.05	18.21	0.01	2.204	18.82	0.89	12.8	86.6	0.6	-2.23	0.68	0.67	1.77	2.1	0.005	0.72	0.0	0.04	18.48	0.01	2.183	20.12	8.05	13.6	85.8	0.6	-2.20	1.11	0.68	0.67	1.40	3927	514	3	0	0	0	0	logfile
✔	8WM8	37645	2024-06-28	2023-10-03	3.54	3.92	3.62	3.9	0.002	0.58	0.0	0.04	14.85	0.00	1.963	8.64	0.00	7.3	92.7	0.0	-2.51	0.59	0.76	1.77	3.9	0.003	0.59	0.0	0.04	16.06	0.00	1.898	9.84	0.89	7.7	92.2	0.1	-2.05	0.37	0.56	0.74	1.67	16776	1055	5	0	1	0	8522	logfile
✔	8WML	37655	2024-06-27	2023-10-03	2.86	3.12	3.00	3.1	0.005	0.86	0.0	0.06	16.12	0.01	2.070	2.65	0.00	4.4	95.6	0.0	-1.13	0.70	0.83	3.08	3.1	0.003	0.58	0.0	0.04	17.39	0.00	2.206	4.96	1.34	3.9	96.1	0.0	-0.24	0.48	0.72	0.85	2.68	13283	1543	4	38	4	0	0	logfile
✔	8WM4	37640	2024-06-27	2023-10-02	2.93	3.34	3.10	3.3	0.004	0.87	0.0	0.05	17.05	0.01	2.291	4.80	0.78	5.9	94.1	0.0	-2.05	0.71	0.73	1.32	3.3	0.002	0.58	0.0	0.04	17.75	0.00	2.143	8.88	2.43	5.3	94.7	0.0	-0.46	0.48	0.71	0.73	1.27	11530	1331	3	38	4	0	0	logfile
✔	8QPF	18549	2024-06-26	2023-10-01	2.53	3.55	2.56	3.3	0.005	0.84	0.0	0.05	14.75	0.01	2.257	3.31	0.75	2.3	97.5	0.3	-0.50	0.78	0.84	3.52	3.3	0.003	0.58	0.0	0.04	15.47	0.00	2.207	9.26	2.02	2.8	97.0	0.3	2.94	1.02	0.65	0.84	3.27	9085	1167	6	0	0	202	0	logfile
✔	8QPE	18548	2024-06-24	2023-10-01	3.1	3.23	3.01	3.0	0.002	0.47	0.0	0.11	15.70	0.00	2.202	8.57	0.00	1.9	98.1	0.0	1.39	0.69	0.83	2.26	2.9	0.002	0.48	0.0	0.04	16.32	0.00	2.124	9.33	0.82	2.0	98.0	0.0	1.30	1.37	0.70	0.86	2.22	54566	6251	21	236	1	0	0	logfile
✔	8WLJ	37621	2024-06-24	2023-09-30	3.6	3.72	3.64	3.7	0.005	0.82	1.0	0.05	14.05	0.01	2.283	8.82	0.00	2.5	97.5	0.0	0.69	0.50	0.75	2.07	3.7	0.003	0.72	0.0	0.04	16.72	0.00	2.249	10.41	3.94	2.9	97.1	0.0	1.34	1.06	0.49	0.74	1.77	4035	530	2	0	0	0	0	logfile
✔	8WLM	37624	2024-06-24	2023-09-30	3.57	3.69	3.72	3.8	0.004	0.80	0.0	0.05	14.40	0.00	2.198	10.34	0.00	3.4	96.6	0.0	0.52	0.43	0.74	1.11	3.7	0.003	0.72	0.0	0.04	16.74	0.00	2.135	12.62	2.38	3.7	96.3	0.0	1.13	0.47	0.44	0.74	1.34	2804	382	2	0	1	0	0	logfile

• ← previous
• Page 22 of 420
• next →