Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WT9	32772	2024-06-24	2022-02-04	4.3	4.38	—	4.3	0.006	1.27	0.0	0.07	13.29	0.01	2.304	5.34	0.27	8.3	91.7	0.0	-3.40	0.71	0.73	—	4.2	0.005	0.81	0.0	0.05	13.45	0.01	2.110	25.00	0.27	12.0	88.0	0.0	-2.83	1.93	0.73	0.77	—	3343	430	3	0	0	0	0	logfile
✔	7WTH	32786	2024-06-24	2022-02-04	4.3	3.63	—	4.0	0.004	0.78	0.0	0.05	12.97	0.01	2.169	9.08	0.85	8.0	92.0	0.0	-2.03	0.69	0.70	—	4.0	0.003	0.69	0.0	0.05	13.50	0.00	2.162	9.39	0.00	9.9	90.1	0.0	-2.15	0.53	0.69	0.71	—	3257	421	3	0	0	0	0	logfile
✔	7WTA	32773	2024-06-30	2022-02-04	3.9	6.12	—	3.5	0.008	0.82	0.0	0.04	13.25	0.00	2.171	19.58	0.00	8.2	91.8	0.0	-0.51	0.89	0.81	0.46	3.5	0.003	0.73	0.0	0.04	14.65	0.00	2.070	15.62	1.11	6.7	93.2	0.1	-0.55	0.42	0.89	0.81	0.46	21080	2736	8	0	4	0	0	logfile
✔	7WTJ	32788	2024-06-24	2022-02-04	4.2	4.07	—	4.1	0.006	0.85	3.0	0.05	13.86	0.01	2.242	10.88	0.58	8.9	91.1	0.0	-2.21	0.55	0.79	—	4.1	0.004	0.72	0.0	0.05	13.76	0.00	2.221	10.25	0.00	12.2	87.8	0.0	-1.92	0.40	0.55	0.80	—	3261	424	3	0	0	0	0	logfile
✔	7TVi	26141	2024-06-27	2022-02-04	3.2	3.59	2.45	3.5	0.005	0.82	0.0	0.05	14.02	0.01	2.228	5.20	0.07	2.6	97.4	0.0	-0.83	0.67	0.67	0.72	3.5	0.004	1.06	3.0	0.05	16.16	0.01	2.170	11.35	3.31	2.4	97.6	0.0	-0.16	1.83	0.74	0.79	2.08	13746	1687	10	0	6	0	0	logfile
✔	7TUY	26135	2024-06-25	2022-02-03	2.98	3.60	—	3.4	0.005	0.87	0.0	0.05	12.82	0.01	2.202	7.13	0.26	5.6	94.4	0.0	-3.71	0.68	0.81	3.08	3.4	0.019	0.74	0.0	0.04	15.28	0.01	2.156	10.38	2.98	5.1	94.9	0.0	-1.31	1.03	0.69	0.83	2.08	7157	928	4	0	1	0	0	logfile
✔	7R1Y	14243	2024-06-24	2022-02-03	3.0	3.01	2.95	3.0	0.002	0.52	0.0	0.04	13.13	0.00	2.252	6.47	3.44	2.9	97.1	0.0	0.36	0.72	0.71	2.29	3.0	0.003	0.59	0.0	0.04	16.24	0.00	2.118	13.02	3.29	3.7	96.3	0.0	1.14	1.12	0.73	0.73	2.12	5704	723	1	0	0	0	0	logfile
✔	7TUZ	26136	2024-06-25	2022-02-03	3.12	3.73	—	3.6	0.011	0.73	0.0	0.07	12.68	0.01	2.161	6.74	0.10	3.5	96.5	0.0	-2.23	0.73	0.86	3.03	3.5	0.004	0.90	0.0	0.04	14.91	0.00	1.732	10.14	2.18	2.8	97.2	0.0	0.10	0.57	0.72	0.86	2.63	8910	1141	6	0	1	0	0	logfile
✔	7R0Z	14225	2024-06-25	2022-02-02	3.5	3.71	3.51	3.7	0.005	0.64	0.0	0.05	13.56	0.01	2.203	3.78	0.00	2.5	97.5	0.0	0.47	0.74	0.82	2.38	3.7	0.003	0.56	0.0	0.04	15.23	0.00	2.285	4.38	1.49	2.3	97.7	0.0	1.10	0.32	0.74	0.82	2.10	6891	839	4	0	9	0	0	logfile
✔	7WSW	32769	2024-06-28	2022-02-02	3.4	3.86	—	3.7	0.003	0.55	0.0	0.04	13.26	0.00	2.149	6.77	0.00	5.5	94.5	0.0	0.70	0.64	0.84	2.21	3.7	0.002	0.53	0.0	0.04	14.60	0.00	2.200	7.17	0.76	5.2	94.8	0.0	0.90	1.12	0.65	0.85	1.96	15051	1868	8	0	7	0	0	logfile
✔	7R12	14228	2024-06-25	2022-02-02	3.3	3.37	3.22	3.3	0.003	0.55	0.0	0.04	13.55	0.00	2.161	4.03	0.00	2.8	97.2	0.0	0.39	0.74	0.81	2.86	3.3	0.005	0.60	0.0	0.04	14.85	0.00	2.093	4.47	2.44	2.9	97.1	0.0	0.70	0.29	0.73	0.84	2.43	6858	839	4	0	7	0	0	logfile
✔	7R0W	14224	2024-06-29	2022-02-02	2.8	3.25	2.77	2.9	0.005	0.96	0.0	0.12	20.39	0.01	2.048	11.73	0.84	3.2	96.8	0.0	-2.64	0.89	0.89	3.27	2.9	0.005	0.84	0.0	0.05	18.42	0.00	2.086	14.48	2.47	2.5	97.5	0.0	0.35	0.49	0.90	0.90	3.87	16830	2040	32	0	27	2	0	logfile
✔	7R10	14226	2024-06-26	2022-02-02	4.0	4.22	3.99	3.9	0.003	0.52	0.0	0.04	13.31	0.00	2.131	6.97	0.47	3.6	96.4	0.0	0.67	0.90	0.83	—	3.9	0.003	0.51	0.0	0.04	14.33	0.00	2.148	8.32	0.94	3.6	96.4	0.0	0.63	0.52	0.90	0.84	—	9823	1210	4	0	8	0	0	logfile
✔	7R11	14227	2024-06-25	2022-02-02	3.5	3.66	3.48	3.7	0.004	0.56	0.0	0.05	11.82	0.00	2.261	4.32	0.54	3.4	96.6	0.0	0.15	0.69	0.75	2.31	3.7	0.004	0.63	0.0	0.04	14.18	0.00	2.227	6.10	0.95	4.6	95.4	0.0	0.10	2.46	0.71	0.75	1.86	6870	837	4	0	8	0	0	logfile
✔	7R0J	14223	2024-06-24	2022-02-02	4.23	4.64	4.43	4.4	0.008	1.03	0.0	0.05	13.44	0.01	2.029	37.19	0.20	8.8	91.2	0.0	-0.99	0.76	0.79	—	4.4	0.006	0.82	0.0	0.05	13.54	0.00	2.057	35.58	0.00	9.0	91.0	0.0	-1.45	0.59	0.76	0.80	—	4669	596	3	0	0	0	0	logfile
✔	7TTH	26115	2024-06-27	2022-02-01	3.25	3.81	—	3.7	0.004	0.70	0.0	0.05	13.05	0.00	2.232	7.80	0.00	4.5	95.5	0.0	-0.01	0.55	0.71	1.99	3.7	0.003	0.86	1.0	0.05	14.23	0.00	2.097	6.20	1.75	4.7	95.3	0.0	0.59	0.51	0.65	0.79	1.71	12698	1750	8	0	10	0	0	logfile
✔	7TTi	26116	2024-06-25	2022-02-01	3.5	3.76	—	3.8	0.008	0.63	0.0	0.04	16.78	0.01	1.990	50.92	0.28	7.7	92.3	0.0	1.88	0.46	0.65	2.20	3.8	0.004	0.76	0.0	0.05	15.07	0.01	2.240	9.30	6.46	6.5	93.5	0.0	0.76	0.56	0.62	0.78	2.01	7670	1084	8	0	10	0	0	logfile
✔	7R06	14220	2024-06-26	2022-02-01	2.27	2.36	2.34	2.3	0.007	0.86	6.0	0.06	20.48	0.01	2.153	12.58	5.53	1.2	98.6	0.2	0.06	0.74	0.80	4.13	2.3	0.005	0.62	0.0	0.05	19.65	0.00	2.188	7.16	3.24	1.8	98.1	0.2	0.78	0.51	0.77	0.85	4.63	31320	3588	12	66	0	0	0	logfile
✔	7R0C	14221	2024-06-25	2022-02-01	4.73	5.24	5.06	5.1	0.005	0.91	1.0	0.05	13.19	0.01	2.100	26.54	0.14	6.1	93.9	0.0	-0.89	0.64	0.73	—	5.1	0.003	0.64	0.0	0.04	13.25	0.00	2.185	18.60	0.14	5.0	95.0	0.0	-0.42	0.47	0.64	0.72	—	6816	875	4	0	1	0	0	logfile
✔	7TTR	26121	2024-06-28	2022-02-01	2.96	3.21	—	3.2	0.009	1.08	1.0	0.08	13.73	0.01	1.788	6.35	0.30	4.4	95.4	0.2	1.27	0.60	0.69	3.46	3.2	0.004	0.64	0.0	0.04	16.50	0.00	1.925	9.86	2.07	3.9	96.0	0.1	0.74	0.75	0.75	0.87	3.59	15697	1912	12	0	23	0	0	logfile

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