Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WSQ	32764	2024-06-28	2022-02-01	3.8	3.52	—	3.9	0.038	1.52	0.0	0.45	14.72	0.01	1.827	11.77	0.00	4.9	95.1	0.0	-0.66	0.68	0.75	1.94	3.8	0.004	1.12	0.0	0.06	16.44	0.00	1.308	15.01	2.23	5.4	94.6	0.0	-0.53	1.29	0.69	0.76	1.92	16522	2104	10	0	10	0	0	logfile
✔	7TTH	26115	2024-06-27	2022-02-01	3.25	3.81	—	3.7	0.004	0.70	0.0	0.05	13.05	0.00	2.232	7.80	0.00	4.5	95.5	0.0	-0.01	0.55	0.71	1.99	3.7	0.003	0.86	1.0	0.05	14.23	0.00	2.097	6.20	1.75	4.7	95.3	0.0	0.59	0.51	0.65	0.79	1.71	12698	1750	8	0	10	0	0	logfile
✔	7TTi	26116	2024-06-25	2022-02-01	3.5	3.76	—	3.8	0.008	0.63	0.0	0.04	16.78	0.01	1.990	50.92	0.28	7.7	92.3	0.0	1.88	0.46	0.65	2.20	3.8	0.004	0.76	0.0	0.05	15.07	0.01	2.240	9.30	6.46	6.5	93.5	0.0	0.76	0.56	0.62	0.78	2.01	7670	1084	8	0	10	0	0	logfile
✔	7TTR	26121	2024-06-28	2022-02-01	2.96	3.21	—	3.2	0.009	1.08	1.0	0.08	13.73	0.01	1.788	6.35	0.30	4.4	95.4	0.2	1.27	0.60	0.69	3.46	3.2	0.004	0.64	0.0	0.04	16.50	0.00	1.925	9.86	2.07	3.9	96.0	0.1	0.74	0.75	0.75	0.87	3.59	15697	1912	12	0	23	0	0	logfile
✔	7TT4	26110	2024-06-30	2022-01-31	4.2	4.40	—	4.3	0.005	0.77	0.0	0.05	10.61	0.00	2.051	2.23	0.00	1.2	98.8	0.0	0.72	0.72	0.76	—	4.3	0.002	0.57	0.0	0.04	13.04	0.00	2.028	6.25	0.00	2.1	97.9	0.0	0.60	2.39	0.70	0.77	—	20633	1346	6	0	0	0	10107	logfile
✔	7TSZ	26105	2024-06-29	2022-01-31	4.5	4.77	—	4.6	0.005	0.89	0.0	0.05	11.13	0.01	2.032	6.90	0.00	1.2	98.8	0.0	0.72	0.73	0.70	—	4.6	0.002	0.55	0.0	0.04	12.63	0.00	1.945	8.12	0.00	3.2	96.8	0.0	-0.14	1.03	0.73	0.73	—	19722	1286	6	0	0	0	9670	logfile
✔	7TT6	26112	2024-06-27	2022-01-31	4.3	4.50	—	4.4	0.005	0.91	0.0	0.05	10.73	0.01	2.190	3.14	0.00	1.4	98.6	0.0	0.38	0.64	0.69	—	4.4	0.005	0.65	0.0	0.04	12.11	0.01	1.869	10.83	0.00	4.0	96.0	0.0	-0.43	1.17	0.66	0.75	—	14047	915	5	0	0	0	6839	logfile
✔	7TS0	26104	2024-06-26	2022-01-31	2.8	3.02	—	3.1	0.004	0.79	0.0	0.05	8.38	0.01	2.273	3.92	0.10	1.5	98.5	0.0	-1.24	0.66	0.80	2.15	3.0	0.004	0.60	0.0	0.04	15.56	0.00	2.110	6.56	2.54	1.9	98.1	0.0	1.54	1.63	0.61	0.83	2.88	9383	1186	6	0	0	0	0	logfile
✔	7TRY	26103	2024-06-25	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.44	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.005	0.77	0.0	0.05	14.55	0.00	2.125	18.31	4.14	3.4	96.6	0.0	1.09	2.53	0.69	0.79	1.32	8340	1211	6	0	0	0	0	logfile
✔	7TT0	26106	2024-06-28	2022-01-31	4.3	4.51	—	4.4	0.005	0.84	0.0	0.05	10.42	0.00	2.151	3.09	0.00	1.2	98.8	0.0	1.30	0.68	0.75	—	4.4	0.002	0.55	0.0	0.04	12.32	0.00	1.958	8.06	0.00	3.1	96.9	0.0	0.74	1.11	0.69	0.77	—	14884	962	5	0	0	0	7253	logfile
✔	7TT7	26113	2024-06-27	2022-01-31	4.8	5.05	—	4.9	0.003	0.84	0.0	0.05	10.50	0.00	2.205	5.04	0.00	1.3	98.7	0.0	0.94	0.66	0.63	—	4.8	0.003	0.60	0.0	0.04	12.00	0.00	1.868	10.15	0.00	3.3	96.7	0.0	-0.44	1.59	0.70	0.73	—	13296	867	5	0	0	0	6468	logfile
✔	7TT5	26111	2024-06-28	2022-01-31	4.3	4.48	—	4.4	0.004	0.69	0.0	0.04	10.02	0.01	2.033	4.14	0.00	0.9	99.1	0.0	1.26	0.65	0.70	—	4.3	0.003	0.54	0.0	0.04	12.07	0.00	1.888	7.23	0.00	2.5	97.5	0.0	0.64	1.18	0.68	0.77	—	14255	928	5	0	0	0	6938	logfile
✔	7TT2	26108	2024-06-30	2022-01-31	4.2	4.39	—	4.3	0.004	0.91	0.0	0.05	10.68	0.01	2.171	2.60	0.00	1.4	98.6	0.0	0.80	0.70	0.75	—	4.3	0.004	0.64	0.0	0.04	13.16	0.00	1.968	8.74	0.00	5.5	94.5	0.0	-0.05	1.57	0.70	0.76	—	20355	1328	6	0	0	0	9973	logfile
✔	7TT3	26109	2024-06-30	2022-01-31	4.3	4.47	—	4.4	0.006	0.99	0.0	0.05	10.46	0.01	2.059	4.09	0.00	1.1	98.9	0.0	1.09	0.73	0.75	—	4.4	0.003	0.60	0.0	0.04	12.71	0.00	1.937	7.75	0.00	4.3	95.7	0.0	-0.28	1.09	0.72	0.78	—	20524	1338	6	0	0	0	10060	logfile
✔	7TT1	26107	2024-06-30	2022-01-31	4.3	4.56	—	4.4	0.004	0.82	0.0	0.05	10.41	0.00	1.973	3.78	0.00	1.3	98.7	0.0	0.92	0.72	0.72	—	4.4	0.003	0.59	0.0	0.04	12.89	0.00	1.980	9.03	0.09	4.1	95.9	0.0	0.04	1.54	0.72	0.75	—	20398	1329	6	0	0	0	10005	logfile
✔	7WSN	32761	2024-06-24	2022-01-30	3.31	3.62	—	3.6	0.007	0.83	0.0	0.04	17.55	0.01	2.248	12.89	1.08	5.6	94.4	0.0	-0.44	0.51	0.78	1.65	3.6	0.003	0.63	0.0	0.04	17.58	0.01	2.211	7.27	1.62	3.7	96.3	0.0	1.45	0.48	0.47	0.76	1.57	3567	463	3	0	3	0	0	logfile
✔	7TRP	26100	2024-06-25	2022-01-30	2.4	3.12	2.45	2.9	0.006	0.82	0.0	0.06	11.23	0.01	2.287	2.62	0.21	2.0	98.0	0.0	-0.43	0.75	0.88	4.06	2.9	0.005	0.60	0.0	0.04	14.53	0.00	1.533	8.67	0.97	1.5	98.5	0.0	1.41	0.98	0.73	0.88	3.99	8681	1122	6	0	2	0	0	logfile
✔	7TRQ	26101	2024-06-25	2022-01-30	2.5	3.10	2.20	2.8	0.006	0.83	0.0	0.06	11.80	0.01	2.295	2.26	0.00	2.0	98.0	0.0	-0.50	0.75	0.89	4.72	2.8	0.003	0.56	0.0	0.04	14.50	0.00	2.098	7.08	1.18	1.8	98.2	0.0	1.21	0.98	0.75	0.90	4.40	8723	1129	6	0	2	0	0	logfile
✔	7TRS	26102	2024-06-25	2022-01-30	2.8	3.39	2.61	3.1	0.006	0.78	0.0	0.05	12.25	0.01	2.243	4.02	0.00	1.9	98.1	0.0	-1.09	0.71	0.83	3.37	3.1	0.004	0.67	0.0	0.04	15.06	0.00	2.119	10.28	2.53	2.1	97.9	0.0	0.83	0.59	0.71	0.84	3.25	8571	1121	5	0	1	0	0	logfile
✔	7WSM	32760	2024-06-24	2022-01-30	3.25	3.65	—	3.6	0.006	0.84	0.0	0.04	17.30	0.01	2.253	11.36	0.81	6.5	93.5	0.0	-1.23	0.62	0.82	1.57	3.6	0.003	0.62	0.0	0.04	16.74	0.01	2.181	8.35	2.96	3.7	96.3	0.0	0.82	0.50	0.62	0.83	1.25	3577	464	3	0	3	0	0	logfile

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