Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TNK	26012	2024-06-29	2022-01-21	4.5	3.85	—	3.8	0.005	1.01	0.0	0.05	11.81	0.01	2.244	4.82	0.40	5.0	94.9	0.1	-4.97	0.71	0.73	—	3.8	0.004	0.67	0.0	0.04	13.07	0.00	2.132	14.12	0.00	5.2	94.8	0.0	-0.22	0.93	0.72	0.74	—	18934	2419	8	0	4	0	0	logfile
✔	7WoG	32651	2024-06-24	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.72	0.0	0.04	10.77	0.00	2.076	19.52	0.00	12.4	87.6	0.0	-2.57	0.92	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	7TNo	26016	2024-06-29	2022-01-21	4.02	3.34	—	3.4	0.004	0.94	0.0	0.05	12.11	0.01	2.023	4.43	0.65	3.7	96.1	0.2	-5.12	0.69	0.76	—	3.4	0.003	0.68	0.0	0.04	13.39	0.00	2.155	10.51	0.00	3.3	96.7	0.0	0.06	0.91	0.70	0.77	—	18810	2405	8	0	4	0	0	logfile
✔	7QVi	14178	2024-06-25	2022-01-21	3.0	3.27	—	3.3	0.005	0.73	0.0	0.04	14.80	0.00	1.960	9.67	0.00	3.3	96.7	0.0	-1.28	0.72	0.88	4.43	3.3	0.005	0.57	0.0	0.04	16.27	0.00	1.879	9.71	1.24	3.5	96.5	0.0	0.45	0.34	0.73	0.89	3.71	56600	7128	32	0	32	0	0	logfile
✔	7QVF	14176	2024-06-25	2022-01-21	3.64	3.54	3.42	4.1	0.012	2.10	22.0	0.12	15.51	0.01	2.525	0.00	0.53	6.0	94.0	0.0	-2.41	0.43	0.77	3.90	3.6	0.007	0.90	0.0	0.06	16.90	0.00	2.078	16.13	3.84	6.8	93.2	0.0	-2.55	3.84	0.39	0.75	3.83	6516	810	6	0	0	0	0	logfile
✔	7QVC	14174	2024-06-24	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.7	0.005	0.74	0.0	0.06	18.06	0.00	2.133	9.23	4.23	5.5	94.5	0.0	-2.30	1.00	0.42	0.89	5.81	3255	405	3	0	0	0	0	logfile
✔	7TNM	26014	2024-06-29	2022-01-21	4.74	3.56	—	3.5	0.007	1.08	0.0	0.06	12.01	0.01	2.214	5.88	0.86	2.6	97.0	0.5	-1.48	0.68	0.68	—	3.5	0.003	0.68	0.0	0.04	12.69	0.00	2.107	14.47	0.00	4.6	95.4	0.0	0.22	1.80	0.69	0.69	—	19448	2486	8	0	4	0	0	logfile
✔	7TNL	26013	2024-06-29	2022-01-21	3.59	3.31	—	3.4	0.009	1.03	0.0	0.06	11.86	0.01	2.246	4.01	0.38	4.6	95.1	0.2	-4.39	0.72	0.83	3.45	3.4	0.003	0.61	0.0	0.04	14.95	0.00	2.087	8.82	2.11	4.1	95.9	0.0	0.71	1.12	0.73	0.83	2.67	19434	2486	8	0	4	0	0	logfile
✔	7TNN	26015	2024-06-29	2022-01-21	3.91	3.40	—	3.6	0.005	0.92	0.0	0.06	11.69	0.01	2.257	4.06	0.34	2.8	97.1	0.1	-2.09	0.71	0.78	2.40	3.4	0.003	0.63	0.0	0.04	15.58	0.00	2.076	11.49	3.07	4.3	95.7	0.0	0.68	1.42	0.72	0.80	2.07	19439	2486	8	0	4	0	0	logfile
✔	7TNP	26017	2024-06-29	2022-01-21	3.96	3.45	—	3.6	0.008	1.09	0.0	0.06	12.46	0.01	2.280	4.16	0.70	5.4	94.5	0.1	-4.96	0.71	0.76	2.12	3.4	0.004	0.87	1.0	0.04	15.61	0.00	2.120	14.63	3.44	4.7	95.2	0.1	0.08	0.89	0.72	0.77	1.81	18840	2408	8	0	4	0	0	logfile
✔	7QVM	14180	2024-06-25	2022-01-21	3.25	3.83	—	3.6	0.003	0.64	0.0	0.04	12.94	0.00	2.156	11.45	0.00	3.6	96.4	0.0	0.22	0.72	0.78	2.24	3.6	0.003	0.63	0.0	0.04	15.49	0.00	2.150	12.28	2.37	3.6	96.4	0.0	0.46	0.78	0.73	0.81	1.75	8528	1094	6	0	1	0	0	logfile
✔	7TNJ	26011	2024-06-29	2022-01-21	4.02	3.16	—	3.3	0.005	0.94	0.0	0.05	11.63	0.01	2.246	3.87	0.20	3.6	96.4	0.0	-4.89	0.65	0.72	—	3.1	0.003	0.66	0.0	0.04	13.16	0.00	2.161	10.87	0.10	3.5	96.5	0.0	0.45	1.28	0.66	0.74	—	18810	2402	8	0	4	0	0	logfile
✔	7WoC	32648	2024-06-24	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.58	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	3.4	0.004	0.71	0.0	0.05	15.13	0.00	2.163	12.85	4.98	11.5	88.5	0.0	-2.96	1.25	0.75	0.83	2.50	4746	610	4	0	1	0	0	logfile
✔	7TMT	26002	2024-06-24	2022-01-20	3.8	4.02	—	3.9	0.005	0.65	0.0	0.04	12.45	0.00	2.109	10.83	0.19	4.7	95.2	0.1	1.20	0.86	0.85	2.16	3.9	0.005	0.65	0.0	0.04	14.36	0.00	2.116	11.59	2.92	4.7	95.2	0.1	0.82	1.26	0.86	0.86	1.82	53433	8221	32	0	1	0	0	logfile
✔	7TMW	26003	2024-06-25	2022-01-20	3.2	2.40	3.16	3.2	0.003	0.70	0.0	0.05	13.22	0.01	2.193	9.31	0.00	2.6	97.4	0.0	-0.28	0.71	0.64	1.01	2.0	0.005	1.00	1.0	0.05	15.69	0.00	2.124	15.24	3.68	3.4	96.6	0.0	0.22	0.48	0.73	0.68	0.95	7320	930	4	0	0	0	0	logfile
✔	7Wo0	32637	2024-06-27	2022-01-20	2.7	2.93	2.56	2.9	0.007	0.91	0.0	0.06	15.45	0.01	2.538	5.18	0.00	3.2	96.8	0.0	-3.84	0.55	0.81	5.89	2.9	0.005	0.58	0.0	0.05	16.69	0.00	2.387	4.10	0.61	3.2	96.8	0.0	-2.12	0.62	0.53	0.85	5.36	12964	910	14	0	0	0	6622	logfile
✔	7Wo9	32643	2024-06-27	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.002	0.50	0.0	0.04	16.17	0.00	2.216	5.82	1.01	4.7	95.3	0.0	1.94	0.74	0.71	0.80	1.84	12743	1581	1	0	0	0	0	logfile
✔	7Wo7	32641	2024-06-24	2022-01-20	3.8	3.99	—	3.9	0.003	0.71	0.0	0.04	11.24	0.00	2.163	6.93	8.82	9.7	90.3	0.0	-4.70	0.72	0.74	1.98	3.9	0.005	0.76	0.0	0.05	15.27	0.01	2.085	17.63	6.07	16.2	83.8	0.0	-3.31	1.79	0.75	0.77	2.07	4870	634	3	0	1	0	0	logfile
✔	7TMS	26001	2024-06-25	2022-01-20	3.8	3.09	—	3.3	0.004	0.66	0.0	0.04	12.97	0.00	2.199	14.14	0.08	3.3	96.6	0.0	1.17	0.82	0.78	2.20	3.3	0.003	0.69	0.0	0.04	15.44	0.00	2.032	14.49	2.90	3.3	96.6	0.0	0.78	0.45	0.82	0.78	2.00	57652	8226	32	0	1	0	0	logfile
✔	7Wo4	32638	2024-06-30	2022-01-20	4.47	3.18	—	3.4	0.003	0.48	0.0	0.04	9.88	0.00	2.234	5.78	3.89	6.1	93.9	0.0	-3.76	0.83	0.71	—	3.4	0.003	0.64	0.0	0.04	10.90	0.00	2.144	8.77	0.03	8.3	91.7	0.0	-2.01	0.82	0.81	0.72	—	71208	9096	24	0	90	0	0	logfile

• ← previous
• Page 219 of 420
• next →