Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WNZ	32636	2024-06-26	2022-01-20	3.4	3.47	—	4.0	0.003	0.52	0.0	0.05	10.39	0.00	2.177	6.80	0.00	6.3	93.7	0.0	-3.33	0.51	0.70	4.51	4.0	0.003	0.64	0.0	0.05	12.56	0.00	2.003	12.51	1.49	9.5	90.5	0.0	-5.72	0.52	0.32	0.67	5.53	9300	650	10	0	0	0	4780	logfile
✔	7TMC	25995	2024-06-24	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	18.02	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.003	0.84	0.0	0.06	15.57	0.01	2.182	16.12	5.29	9.5	90.5	0.0	-4.13	1.95	0.34	0.75	3.02	3426	405	6	0	12	0	0	logfile
✔	7TMR	26000	2024-06-25	2022-01-19	3.5	3.65	—	3.5	0.003	0.62	0.0	0.04	12.90	0.00	2.124	12.17	0.12	3.3	96.7	0.0	1.40	0.75	0.79	2.12	3.5	0.003	0.64	0.0	0.04	15.45	0.00	2.056	13.63	3.71	3.3	96.7	0.0	1.08	1.26	0.76	0.79	1.76	57795	8224	32	0	1	0	0	logfile
✔	7QV5	14167	2024-06-24	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.36	0.0	0.06	12.41	0.00	2.576	1.08	0.00	2.1	97.9	0.0	-1.49	0.86	0.50	0.90	6.84	5562	342	27	0	18	0	2997	logfile
✔	7TLY	25990	2024-06-24	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.32	2.0	0.08	12.98	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	3.0	0.003	0.60	0.0	0.04	13.34	0.01	2.213	4.05	2.46	2.0	98.0	0.0	-1.14	1.03	0.68	0.83	5.07	3105	408	4	0	4	0	0	logfile
✔	7QV6	14168	2024-06-24	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.40	0.0	0.06	11.88	0.00	2.320	1.65	0.79	0.0	100.0	0.0	0.64	0.40	0.40	0.86	5.54	4842	306	18	0	0	0	2556	logfile
✔	7WNQ	32633	2024-06-25	2022-01-19	2.7	2.91	2.72	3.0	0.012	1.20	6.0	0.07	9.17	0.01	2.155	1.80	0.63	3.6	96.4	0.0	-5.53	0.68	0.86	4.76	3.0	0.003	0.61	0.0	0.04	14.07	0.00	2.261	3.54	2.01	2.5	97.5	0.0	1.82	1.24	0.66	0.86	3.80	8847	1104	3	0	0	0	0	logfile
✔	7TLZ	25991	2024-06-24	2022-01-19	3.3	3.47	3.24	3.4	0.011	1.30	0.0	0.08	9.09	0.01	2.581	0.87	0.31	2.8	97.2	0.0	1.02	0.68	0.81	5.51	3.4	0.006	0.70	0.0	0.05	12.25	0.00	2.297	4.51	0.94	4.6	95.4	0.0	0.55	1.00	0.68	0.87	5.92	3621	475	3	0	6	0	0	logfile
✔	7QUN	14149	2024-06-30	2022-01-18	2.1	2.22	—	2.2	0.005	0.72	0.0	0.05	15.64	0.00	2.230	4.57	0.88	2.1	97.9	0.0	0.29	0.63	0.77	5.98	2.2	0.003	0.61	0.0	0.05	15.44	0.00	2.266	1.98	0.92	1.7	98.3	0.0	0.25	0.21	0.74	0.86	6.08	21094	2773	8	0	4	0	0	logfile
✔	7QUQ	14151	2024-06-29	2022-01-18	2.6	2.44	—	2.8	0.009	0.94	0.0	0.05	13.76	0.01	2.144	15.78	0.10	4.7	95.3	0.0	-1.38	0.64	0.65	1.63	2.8	0.004	0.74	0.0	0.05	17.03	0.01	2.090	23.40	2.83	5.4	94.6	0.0	-1.14	1.95	0.67	0.70	1.45	19095	2457	12	0	6	0	0	logfile
✔	7QUD	14148	2024-06-25	2022-01-17	3.47	3.26	—	3.3	0.004	0.62	0.0	0.04	16.74	0.01	2.033	11.70	0.00	3.5	96.5	0.0	-0.13	0.67	0.77	2.12	3.2	0.003	0.59	0.0	0.04	18.27	0.01	1.995	12.31	2.79	2.9	97.1	0.0	-0.01	0.43	0.67	0.78	1.61	6696	844	4	0	3	0	0	logfile
✔	7TKT	25981	2024-06-27	2022-01-17	3.6	3.75	3.75	3.7	0.007	1.26	0.0	0.04	21.05	0.01	2.224	6.30	0.00	4.7	95.3	0.0	0.63	0.72	0.81	2.05	3.7	0.003	0.69	0.0	0.04	18.33	0.00	2.160	7.94	0.60	5.1	94.9	0.0	1.09	1.95	0.72	0.82	2.23	13252	1560	8	0	56	0	0	logfile
✔	7TKQ	25978	2024-06-30	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.009	1.21	0.0	0.00	7.52	0.01	1.933	34.86	0.00	13.6	85.9	0.5	-2.21	0.83	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7WN1	32619	2024-06-24	2022-01-17	3.11	3.41	—	3.3	0.007	0.65	0.0	0.04	13.83	0.00	2.246	7.77	0.00	3.7	96.3	0.0	1.00	0.64	0.87	3.64	3.3	0.003	0.55	0.0	0.04	15.99	0.00	2.143	8.41	3.02	3.7	96.3	0.0	1.84	0.89	0.65	0.89	3.19	3901	493	3	0	1	0	0	logfile
✔	7WN4	32621	2024-06-29	2022-01-17	3.4	3.53	—	3.4	0.007	0.96	0.0	0.05	14.19	0.01	2.137	11.57	0.15	13.5	86.3	0.2	-3.02	0.83	0.85	2.65	3.4	0.005	0.72	0.0	0.05	15.65	0.01	2.144	9.15	2.01	10.7	89.3	0.0	-2.24	1.04	0.83	0.86	2.54	18224	2372	8	0	14	0	0	logfile
✔	7WN0	32618	2024-06-24	2022-01-17	3.64	3.82	—	3.7	0.003	0.57	0.0	0.04	16.82	0.01	2.273	9.34	0.47	3.3	96.7	0.0	1.10	0.58	0.82	1.51	3.7	0.004	0.62	0.0	0.04	16.93	0.00	2.240	11.51	4.20	3.9	96.1	0.0	1.32	1.90	0.68	0.86	1.36	3879	494	2	0	0	0	0	logfile
✔	7TJZ	25947	2024-06-30	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.017	1.19	0.0	0.00	6.51	0.01	2.047	16.64	0.00	13.2	86.4	0.3	-1.19	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TJX	25939	2024-06-30	2022-01-17	4.0	3.84	4.09	3.9	0.003	0.62	0.0	0.05	12.05	0.00	1.858	2.49	0.05	1.8	98.2	0.0	0.09	0.60	0.79	—	3.9	0.003	0.66	0.0	0.04	15.74	0.00	1.899	10.37	3.59	2.6	97.4	0.0	0.37	1.47	0.62	0.80	—	21663	3072	12	0	11	0	0	logfile
✔	7TJY	25946	2024-06-30	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.6	0.004	0.79	0.0	0.00	4.84	0.00	2.161	3.93	0.00	9.8	90.0	0.3	0.68	1.48	0.82	0.86	—	20228	5056	27	0	0	0	0	logfile
✔	7TKo	25976	2024-06-30	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.004	0.84	0.0	0.00	5.80	0.00	2.139	12.52	0.00	10.1	89.6	0.2	-0.46	0.84	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile

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