Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WN0	32618	2024-06-24	2022-01-17	3.64	3.82	—	3.7	0.003	0.57	0.0	0.04	16.82	0.01	2.273	9.34	0.47	3.3	96.7	0.0	1.10	0.58	0.82	1.51	3.7	0.004	0.62	0.0	0.04	16.93	0.00	2.240	11.51	4.20	3.9	96.1	0.0	1.32	1.90	0.68	0.86	1.36	3879	494	2	0	0	0	0	logfile
✔	7QUD	14148	2024-06-25	2022-01-17	3.47	3.26	—	3.3	0.004	0.62	0.0	0.04	16.74	0.01	2.033	11.70	0.00	3.5	96.5	0.0	-0.13	0.67	0.77	2.12	3.2	0.003	0.59	0.0	0.04	18.27	0.01	1.995	12.31	2.79	2.9	97.1	0.0	-0.01	0.43	0.67	0.78	1.61	6696	844	4	0	3	0	0	logfile
✔	7TJZ	25947	2024-06-30	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.017	1.19	0.0	0.00	6.51	0.01	2.047	16.64	0.00	13.2	86.4	0.3	-1.19	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TJW	25934	2024-06-30	2022-01-17	4.0	3.71	4.05	3.8	0.003	0.64	0.0	0.05	13.06	0.00	1.855	2.42	0.00	2.2	97.8	0.0	0.19	0.61	0.79	—	3.8	0.003	0.65	0.0	0.04	16.04	0.00	1.878	9.24	3.75	3.3	96.7	0.0	0.67	0.62	0.62	0.80	—	22500	3097	12	0	10	0	0	logfile
✔	7WN1	32619	2024-06-24	2022-01-17	3.11	3.41	—	3.3	0.007	0.65	0.0	0.04	13.83	0.00	2.246	7.77	0.00	3.7	96.3	0.0	1.00	0.64	0.87	3.64	3.3	0.003	0.55	0.0	0.04	15.99	0.00	2.143	8.41	3.02	3.7	96.3	0.0	1.84	0.89	0.65	0.89	3.19	3901	493	3	0	1	0	0	logfile
✔	7TJX	25939	2024-06-30	2022-01-17	4.0	3.84	4.09	3.9	0.003	0.62	0.0	0.05	12.05	0.00	1.858	2.49	0.05	1.8	98.2	0.0	0.09	0.60	0.79	—	3.9	0.003	0.66	0.0	0.04	15.74	0.00	1.899	10.37	3.59	2.6	97.4	0.0	0.37	1.47	0.62	0.80	—	21663	3072	12	0	11	0	0	logfile
✔	7TKP	25977	2024-06-30	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.67	0.00	2.069	13.64	0.00	9.3	90.5	0.2	-0.09	0.76	0.78	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7TJF	25924	2024-06-30	2022-01-16	2.6	3.06	2.57	2.8	0.005	0.87	0.0	0.05	19.81	0.01	1.795	4.00	1.87	2.1	97.9	0.0	-1.60	0.85	0.89	3.79	2.8	0.003	0.57	0.0	0.04	19.57	0.00	1.896	6.48	1.87	2.2	97.8	0.0	1.17	1.37	0.86	0.92	3.59	21125	2327	19	82	6	297	0	logfile
✔	7WMM	32615	2024-06-24	2022-01-15	2.6	2.33	—	2.7	0.008	0.86	0.0	0.05	12.79	0.00	2.361	5.62	0.00	6.8	93.2	0.0	-2.83	0.51	0.88	6.56	2.7	0.004	0.79	0.0	0.05	16.37	0.00	2.249	4.69	0.38	7.1	92.9	0.0	-2.25	0.46	0.52	0.89	5.74	2618	366	8	0	2	0	0	logfile
✔	7QTQ	14145	2024-06-25	2022-01-15	3.3	3.53	—	3.4	0.008	0.83	4.0	0.06	15.29	0.01	2.045	9.61	0.20	10.6	89.4	0.0	-2.27	0.72	0.82	2.74	3.5	0.003	0.57	2.0	0.04	15.65	0.01	1.934	8.83	0.66	7.8	92.2	0.0	-1.06	0.38	0.71	0.84	2.34	54954	3577	8	0	24	0	26821	logfile
✔	7WM2	32598	2024-06-28	2022-01-14	2.69	2.86	—	3.0	0.012	1.03	12.0	0.07	18.17	0.01	2.110	18.30	12.04	5.9	94.0	0.2	-4.24	0.49	0.72	2.14	3.0	0.003	0.67	0.0	0.04	17.78	0.00	2.188	9.25	4.71	2.7	97.3	0.0	0.03	1.26	0.60	0.83	2.48	15485	1878	8	0	7	0	0	logfile
✔	7QTK	14143	2024-06-24	2022-01-14	3.84	4.13	—	4.0	0.004	0.73	1.0	0.05	13.16	0.00	2.182	9.44	0.54	4.9	95.0	0.2	-0.03	0.61	0.79	1.74	4.0	0.003	0.66	0.0	0.05	14.43	0.00	2.180	9.85	1.80	5.0	94.8	0.2	-0.11	0.53	0.62	0.79	1.78	5009	643	4	0	2	0	0	logfile
✔	7TJ9	25920	2024-06-26	2022-01-14	2.9	3.19	—	3.1	0.016	1.01	0.0	0.05	20.67	0.01	2.167	6.06	0.09	5.0	95.0	0.0	0.12	0.56	0.82	2.67	3.1	0.002	0.56	0.0	0.04	17.31	0.00	2.210	5.70	2.25	2.5	97.5	0.0	1.71	1.24	0.53	0.83	2.07	10975	1273	5	0	24	0	0	logfile
✔	7WM1	32597	2024-06-28	2022-01-14	2.8	2.99	—	3.1	0.012	1.25	34.0	0.08	20.14	0.01	2.080	15.92	15.89	6.6	93.4	0.0	-4.36	0.65	0.80	2.43	3.1	0.003	0.61	0.0	0.04	18.54	0.00	2.204	7.75	3.55	4.0	95.9	0.1	-0.27	3.93	0.59	0.80	2.45	15197	1844	8	0	7	0	0	logfile
✔	7TJ8	25919	2024-06-26	2022-01-14	3.2	3.59	—	3.5	0.015	1.03	2.0	0.06	17.59	0.01	2.042	6.51	0.80	6.0	93.4	0.7	-2.85	0.58	0.84	3.59	3.5	0.003	0.65	0.0	0.04	16.79	0.00	2.216	4.09	1.78	4.6	95.3	0.1	0.78	1.33	0.58	0.85	2.31	10551	1242	4	0	18	0	0	logfile
✔	7WM0	32596	2024-06-24	2022-01-14	3.35	3.62	—	3.7	0.009	1.22	0.0	0.08	12.60	0.01	2.405	9.08	0.28	5.4	94.6	0.0	-2.87	0.69	0.56	0.97	3.6	0.004	0.84	0.0	0.05	16.37	0.00	2.037	16.19	6.89	5.9	94.1	0.0	-1.99	1.76	0.76	0.68	0.46	3376	432	4	0	1	0	0	logfile
✔	7QTJ	14142	2024-06-26	2022-01-14	4.01	4.23	—	4.1	0.004	0.73	4.0	0.05	15.20	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.006	0.82	0.0	0.05	13.31	0.00	2.149	16.88	0.09	8.0	91.7	0.2	-1.35	0.51	0.64	0.75	—	9942	1280	8	0	5	0	0	logfile
✔	7TJ2	25915	2024-06-29	2022-01-14	3.2	3.32	—	3.4	0.002	0.37	0.0	0.04	11.30	0.00	2.196	3.77	1.64	2.4	97.6	0.0	0.18	0.69	0.76	3.52	3.3	0.004	0.54	0.0	0.04	15.12	0.00	2.192	6.55	3.34	3.3	96.7	0.0	-0.16	2.83	0.71	0.82	3.40	17083	2007	8	62	0	0	0	logfile
✔	7WLC	32581	2024-06-24	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.1	0.004	0.76	0.0	0.05	16.01	0.00	2.156	17.48	3.34	9.4	90.6	0.0	-1.65	0.49	0.72	0.78	—	3307	430	3	0	0	0	0	logfile
✔	7WLR	32591	2024-06-27	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.27	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.003	0.53	0.0	0.03	28.09	0.00	2.171	7.98	1.25	1.4	98.6	0.0	3.30	1.22	0.78	0.82	1.95	11922	754	10	290	0	0	0	logfile

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