Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WLi	32584	2024-06-26	2022-01-13	3.3	3.59	—	3.6	0.012	1.01	1.0	0.06	15.40	0.01	1.888	15.00	0.20	7.3	92.5	0.2	-0.17	0.59	0.78	2.16	3.6	0.004	0.73	0.0	0.04	15.81	0.00	2.136	14.79	0.99	6.7	93.3	0.0	0.56	0.48	0.59	0.79	1.76	9493	1135	1	0	21	0	0	logfile
✔	7WLC	32581	2024-06-24	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.1	0.004	0.76	0.0	0.05	16.01	0.00	2.156	17.48	3.34	9.4	90.6	0.0	-1.65	0.49	0.72	0.78	—	3307	430	3	0	0	0	0	logfile
✔	7WLR	32591	2024-06-27	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.27	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.003	0.53	0.0	0.03	28.09	0.00	2.171	7.98	1.25	1.4	98.6	0.0	3.30	1.22	0.78	0.82	1.95	11922	754	10	290	0	0	0	logfile
✔	7WLL	32587	2024-06-26	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	16.94	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.8	0.004	0.85	0.0	0.06	16.93	0.00	2.181	12.63	1.49	6.5	93.5	0.0	0.84	1.17	0.59	0.81	1.52	9540	1135	1	0	21	0	0	logfile
✔	7TiK	25912	2024-06-24	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.42	0.0	0.04	16.39	0.00	2.243	8.33	1.35	0.6	99.4	0.0	6.01	0.91	0.79	0.81	1.38	2565	339	6	0	0	0	0	logfile
✔	7WLJ	32585	2024-06-26	2022-01-13	3.9	4.18	—	4.1	0.009	1.01	0.0	0.14	16.92	0.00	1.912	18.90	0.10	6.7	93.3	0.0	0.03	0.59	0.80	1.62	4.1	0.005	0.89	0.0	0.05	15.86	0.00	2.145	17.91	1.79	6.9	93.1	0.0	-0.07	0.63	0.61	0.81	1.09	9450	1135	1	0	15	0	0	logfile
✔	7WLE	32583	2024-06-26	2022-01-13	3.62	3.17	—	3.3	0.003	0.50	0.0	0.04	9.91	0.00	2.240	9.09	5.25	6.1	93.9	0.0	-3.62	0.78	0.75	1.67	3.4	0.004	0.76	0.0	0.04	14.84	0.00	2.141	17.17	4.09	6.5	93.5	0.0	-0.72	1.41	0.80	0.78	1.76	10188	1324	2	0	0	0	0	logfile
✔	7WL2	32574	2024-06-26	2022-01-12	3.25	2.44	—	2.9	0.002	0.49	0.0	0.04	8.51	0.00	2.207	6.40	2.14	4.9	95.0	0.1	-4.09	0.76	0.76	3.15	2.2	0.004	0.68	0.0	0.04	14.84	0.00	2.111	10.83	4.55	6.2	93.6	0.2	0.14	0.59	0.80	0.81	2.51	10198	1330	2	0	0	0	0	logfile
✔	7WLA	32579	2024-06-26	2022-01-12	3.76	3.09	3.72	3.2	0.002	0.44	0.0	0.04	8.82	0.00	2.197	6.98	4.01	5.1	94.9	0.0	-4.06	0.70	0.68	0.60	3.2	0.004	0.78	0.0	0.05	14.15	0.00	2.116	18.82	3.83	7.4	92.6	0.1	-0.89	1.37	0.72	0.71	1.00	10193	1327	2	0	0	0	0	logfile
✔	7WLB	32580	2024-06-26	2022-01-12	4.1	3.63	—	3.5	0.002	0.44	0.0	0.04	8.68	0.00	2.205	6.88	3.92	4.5	95.5	0.0	-4.05	0.74	0.72	—	3.4	0.004	0.71	0.0	0.04	11.24	0.00	2.157	18.00	0.00	6.4	93.5	0.1	-0.65	1.45	0.75	0.75	—	10193	1327	2	0	0	0	0	logfile
✔	7WL9	32578	2024-06-26	2022-01-12	3.78	3.44	—	3.5	0.002	0.49	0.0	0.04	9.09	0.00	2.201	6.64	4.27	4.6	95.3	0.1	-4.11	0.78	0.74	1.09	3.6	0.004	0.82	0.0	0.05	13.98	0.00	2.149	16.84	4.81	7.6	92.3	0.1	-0.43	0.85	0.78	0.77	1.39	10194	1327	3	0	1	0	0	logfile
✔	7QRU	14124	2024-06-28	2022-01-12	2.24	2.32	2.24	2.4	0.020	2.18	9.0	0.10	14.73	0.02	2.058	6.63	2.50	2.6	97.4	0.1	-1.62	0.79	0.91	4.88	2.4	0.003	0.58	0.0	0.04	15.63	0.00	2.174	5.89	1.49	1.0	99.0	0.0	2.33	1.14	0.79	0.90	3.95	16100	1957	18	0	3	360	0	logfile
✔	7WL7	32576	2024-06-26	2022-01-12	3.51	3.41	—	3.5	0.002	0.50	0.0	0.04	8.84	0.00	2.214	5.97	3.39	4.6	95.3	0.1	-3.63	0.79	0.77	2.09	3.5	0.003	0.78	0.0	0.04	14.17	0.00	2.187	15.74	3.57	6.7	93.3	0.1	0.16	0.86	0.79	0.79	1.70	10198	1330	2	0	0	0	0	logfile
✔	7WL8	32577	2024-06-26	2022-01-12	3.4	3.22	—	3.4	0.002	0.49	0.0	0.04	9.00	0.00	2.251	6.35	1.87	4.6	95.3	0.1	-3.89	0.83	0.80	2.71	3.3	0.005	1.03	2.0	0.06	14.17	0.01	1.858	14.83	3.57	5.9	93.9	0.2	0.13	1.33	0.84	0.84	2.52	10198	1330	2	0	0	0	0	logfile
✔	7QRM	14123	2024-06-29	2022-01-11	2.7	2.81	—	2.9	0.009	0.91	0.0	0.05	20.05	0.01	2.033	14.02	1.88	4.6	95.4	0.0	-0.52	0.71	0.88	3.72	2.9	0.003	0.64	0.0	0.04	17.15	0.00	2.162	3.80	1.88	3.3	96.7	0.0	1.06	0.92	0.70	0.89	3.15	16336	1902	27	0	37	0	0	logfile
✔	7THM	25898	2024-06-29	2022-01-11	3.18	3.44	—	3.4	0.002	0.50	0.0	0.04	13.36	0.00	1.713	3.23	0.00	5.9	94.1	0.0	-0.75	0.68	0.73	2.05	3.4	0.002	0.48	0.0	0.04	14.74	0.00	1.956	4.70	0.30	5.9	94.1	0.0	-0.96	0.42	0.68	0.75	2.05	18260	1150	6	0	4	0	9045	logfile
✔	7WKW	32570	2024-06-27	2022-01-11	2.62	2.71	—	2.8	0.004	0.57	0.0	0.04	13.10	0.00	1.991	5.89	0.00	1.9	98.1	0.0	1.70	0.47	0.63	1.09	2.7	0.003	0.55	0.0	0.04	15.49	0.00	1.930	4.64	1.57	1.6	98.4	0.0	1.83	0.60	0.61	0.82	2.29	12056	754	4	0	2	0	6138	logfile
✔	7THE	25893	2024-06-24	2022-01-10	3.87	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.76	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	4.0	0.003	0.70	0.0	0.04	16.19	0.00	2.165	15.28	6.09	6.7	93.3	0.0	-1.22	0.69	0.68	0.76	2.74	3305	423	4	0	1	0	0	logfile
✔	7WKD	32565	2024-06-29	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	6.84	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.1	0.017	0.75	0.0	0.04	14.60	0.00	1.907	12.66	2.92	2.6	97.4	0.0	0.72	1.01	0.72	0.74	2.49	17515	1120	6	0	0	0	8712	logfile
✔	7QQK	14122	2024-06-27	2022-01-09	3.8	4.08	3.83	4.0	0.004	0.81	0.0	0.05	13.77	0.01	2.117	25.98	0.00	5.2	94.5	0.2	-0.09	0.65	0.78	1.88	4.0	0.006	0.97	1.0	0.05	16.05	0.01	2.106	27.10	3.02	5.9	94.0	0.1	-0.39	0.46	0.65	0.79	1.58	13444	1732	8	12	0	0	0	logfile

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