Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WJZ	32553	2024-06-29	2022-01-08	3.34	2.55	—	2.1	0.003	0.57	5.0	0.05	9.68	0.01	2.238	8.05	5.50	8.7	91.3	0.0	-4.86	0.72	0.69	2.17	2.2	0.003	0.73	0.0	0.05	14.03	0.00	2.081	13.15	4.79	10.6	89.3	0.1	-2.08	1.31	0.75	0.74	2.01	69158	8886	24	0	49	0	0	logfile
✔	7WK7	32561	2024-06-26	2022-01-08	3.49	2.78	—	3.0	0.002	0.44	0.0	0.04	8.68	0.00	2.206	5.49	3.12	4.5	95.4	0.1	-3.90	0.77	0.76	2.02	3.0	0.004	0.74	0.0	0.04	14.90	0.00	2.193	15.64	4.63	7.0	92.9	0.2	-0.97	0.73	0.80	0.80	2.20	10206	1330	4	0	2	0	0	logfile
✔	7WK6	32560	2024-06-25	2022-01-08	3.67	2.86	—	3.8	0.008	1.07	1.0	0.07	15.40	0.01	2.328	5.81	0.57	4.7	94.9	0.4	-5.05	0.77	0.77	2.23	3.7	0.004	0.80	0.0	0.05	17.89	0.00	2.145	14.33	3.74	3.6	96.4	0.0	-0.94	1.36	0.79	0.78	1.76	6428	791	2	0	0	0	0	logfile
✔	7WK8	32562	2024-06-24	2022-01-08	3.61	2.50	—	2.3	0.004	0.74	0.0	0.05	8.51	0.01	2.262	5.72	0.22	3.9	95.9	0.2	-1.34	0.77	0.76	3.80	2.3	0.004	0.63	0.0	0.04	13.02	0.00	2.082	8.01	1.55	3.0	96.9	0.2	0.28	1.24	0.80	0.79	4.16	3982	516	4	0	0	0	0	logfile
✔	7WK1	32555	2024-06-26	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.60	0.0	0.04	13.46	0.00	2.059	11.84	3.30	6.2	93.7	0.1	0.12	0.79	0.70	0.84	1.40	10200	1330	4	0	2	0	0	logfile
✔	7WJN	32546	2024-06-27	2022-01-07	3.3	3.46	—	3.4	0.004	0.59	0.0	0.04	10.44	0.00	2.235	2.90	0.58	4.1	95.9	0.0	2.06	0.67	0.82	2.37	3.4	0.004	0.57	0.0	0.04	13.96	0.00	2.218	4.94	2.52	5.6	94.4	0.0	1.94	0.47	0.69	0.85	1.95	13054	1616	4	0	4	0	0	logfile
✔	7TGG	25881	2024-06-29	2022-01-07	4.1	4.67	—	4.4	0.004	0.71	0.0	0.05	11.74	0.01	2.070	15.91	0.00	7.4	92.6	0.0	-2.21	0.66	0.82	—	4.4	0.003	0.70	0.0	0.04	11.93	0.00	2.250	7.75	0.00	10.1	89.9	0.0	-0.54	0.69	0.68	0.87	—	18255	2445	30	0	0	0	0	logfile
✔	7WJU	32548	2024-06-25	2022-01-07	2.69	2.82	—	2.8	0.007	0.99	0.0	0.07	21.91	0.01	2.325	3.53	0.00	5.3	94.5	0.2	-2.47	0.72	0.81	3.88	2.9	0.003	0.55	0.0	0.04	22.24	0.00	2.238	6.65	1.13	4.5	95.5	0.0	0.82	1.16	0.70	0.83	3.29	8322	607	5	158	0	0	0	logfile
✔	7TFS	25879	2024-06-27	2022-01-07	4.3	4.40	—	4.4	0.004	0.96	0.0	0.04	16.80	0.01	2.001	35.40	0.00	6.0	94.0	0.0	-2.06	0.63	0.70	—	4.4	0.005	0.97	0.0	0.04	15.91	0.01	2.131	14.90	0.00	8.0	92.0	0.0	-1.88	0.55	0.64	0.73	—	11382	1414	7	0	28	0	0	logfile
✔	7TGE	25880	2024-06-30	2022-01-07	3.68	4.05	3.74	3.7	0.004	0.76	0.0	0.06	13.34	0.01	2.270	3.50	0.09	3.8	96.2	0.0	-1.30	0.80	0.72	0.89	3.7	0.005	0.64	0.0	0.04	14.26	0.00	2.004	11.17	0.94	5.0	95.0	0.0	-0.46	1.15	0.81	0.75	0.74	21461	2677	15	0	40	0	0	logfile
✔	7WJo	32547	2024-06-27	2022-01-07	3.2	3.40	—	3.3	0.006	0.55	0.0	0.04	11.70	0.00	2.203	4.21	0.29	4.4	95.6	0.0	1.94	0.67	0.82	2.26	3.4	0.003	0.52	0.0	0.04	14.62	0.00	2.233	5.70	2.69	5.1	94.9	0.0	1.49	0.51	0.67	0.85	1.70	12932	1602	4	0	2	0	0	logfile
✔	7WJM	32545	2024-06-27	2022-01-07	3.3	3.53	—	3.5	0.003	0.48	0.0	0.04	10.78	0.00	2.265	3.14	0.29	5.0	95.0	0.0	1.87	0.70	0.85	2.41	3.5	0.003	0.53	0.0	0.04	14.21	0.00	2.269	4.27	2.95	4.2	95.7	0.1	2.19	3.22	0.71	0.87	1.98	12970	1614	2	0	0	0	0	logfile
✔	7TEY	25855	2024-06-30	2022-01-06	2.25	2.88	—	2.7	0.005	0.82	0.0	0.06	12.95	0.01	2.293	3.31	0.00	2.0	98.0	0.0	0.06	0.77	0.83	3.44	2.7	0.003	0.56	0.0	0.05	14.16	0.00	2.180	6.20	1.01	1.8	98.2	0.0	0.76	1.16	0.76	0.84	3.56	21867	2703	24	0	56	0	0	logfile
✔	7TF3	25860	2024-06-30	2022-01-06	2.25	2.94	—	2.8	0.005	0.82	0.0	0.06	12.94	0.01	2.287	3.03	0.00	2.0	98.0	0.0	0.09	0.79	0.83	3.63	2.7	0.005	0.61	0.0	0.05	14.21	0.00	2.145	6.48	1.22	2.3	97.7	0.0	0.71	1.85	0.79	0.85	3.59	21873	2703	24	0	56	0	0	logfile
✔	7TFi	25873	2024-06-30	2022-01-06	3.41	3.65	—	3.5	0.003	0.60	0.0	0.04	15.25	0.00	2.049	8.57	0.05	3.2	96.8	0.0	-0.07	0.77	0.82	1.96	3.6	0.003	0.56	0.0	0.04	16.77	0.00	1.968	10.64	2.00	3.3	96.7	0.0	0.54	0.90	0.79	0.85	1.63	20573	2480	15	42	9	0	0	logfile
✔	7TFJ	25874	2024-06-30	2022-01-06	3.3	3.54	—	3.5	0.003	0.62	0.0	0.04	15.19	0.00	2.088	7.61	0.09	2.8	97.2	0.0	0.19	0.76	0.81	2.14	3.5	0.003	0.57	0.0	0.04	16.87	0.00	2.011	10.65	2.13	3.5	96.5	0.0	0.61	0.92	0.76	0.83	1.73	20607	2486	15	42	9	0	0	logfile
✔	7TEW	25853	2024-06-25	2022-01-06	3.52	4.17	—	3.8	0.005	0.85	0.0	0.06	13.34	0.01	2.344	2.89	0.14	1.4	98.6	0.0	0.00	0.82	0.82	2.55	3.8	0.003	0.59	0.0	0.04	15.44	0.00	2.210	9.68	1.29	2.3	97.7	0.0	1.74	1.58	0.83	0.84	1.98	6555	797	4	0	7	0	0	logfile
✔	7TEZ	25856	2024-06-25	2022-01-06	3.27	3.81	—	3.6	0.006	0.90	0.0	0.06	13.45	0.01	2.323	2.50	0.71	1.5	98.5	0.0	0.05	0.79	0.84	2.89	3.6	0.003	0.56	0.0	0.04	15.72	0.00	2.208	7.42	1.29	2.6	97.4	0.0	1.64	0.62	0.81	0.86	2.09	6553	797	4	0	7	0	0	logfile
✔	7TF1	25858	2024-06-27	2022-01-06	3.57	4.05	—	3.9	0.004	0.77	0.0	0.06	12.71	0.01	2.300	2.67	0.36	2.5	97.5	0.0	-1.40	0.60	0.81	2.33	3.9	0.003	0.60	0.0	0.05	14.31	0.00	2.090	9.73	2.16	2.5	97.5	0.0	-0.44	0.72	0.61	0.83	1.79	12786	1608	12	0	12	0	0	logfile
✔	7TFL	25876	2024-06-27	2022-01-06	3.33	3.61	—	3.5	0.003	0.62	0.0	0.04	15.10	0.00	2.089	9.78	0.14	3.5	96.5	0.0	0.58	0.70	0.59	0.62	3.5	0.003	0.69	0.0	0.04	17.02	0.00	1.893	17.85	2.74	4.0	96.0	0.0	0.40	1.73	0.73	0.66	1.09	13690	1653	12	24	9	0	0	logfile

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