Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TEZ	25856	2024-06-25	2022-01-06	3.27	3.81	—	3.6	0.006	0.90	0.0	0.06	13.45	0.01	2.323	2.50	0.71	1.5	98.5	0.0	0.05	0.79	0.84	2.89	3.6	0.003	0.56	0.0	0.04	15.72	0.00	2.208	7.42	1.29	2.6	97.4	0.0	1.64	0.62	0.81	0.86	2.09	6553	797	4	0	7	0	0	logfile
✔	7TFK	25875	2024-06-28	2022-01-06	3.25	3.36	—	3.3	0.003	0.65	0.0	0.04	16.01	0.01	2.092	10.12	0.13	3.2	96.8	0.0	0.18	0.69	0.63	1.06	3.3	0.003	0.61	0.0	0.04	17.40	0.00	1.866	14.47	2.42	3.8	96.2	0.0	0.34	0.43	0.71	0.68	1.18	14363	1680	14	45	9	0	0	logfile
✔	7WiU	32536	2024-06-25	2022-01-05	3.48	3.87	—	3.7	0.004	0.94	5.0	0.05	14.54	0.00	2.070	12.01	2.16	11.7	87.4	0.9	-3.47	0.68	0.86	2.13	3.7	0.003	0.75	0.0	0.04	15.72	0.00	2.224	8.52	2.84	9.4	90.3	0.3	-0.16	0.97	0.69	0.86	1.65	8615	1147	2	0	0	0	0	logfile
✔	7WJ5	32543	2024-06-25	2022-01-05	3.72	3.15	—	3.2	0.004	0.55	0.0	0.04	10.79	0.00	2.173	7.85	3.05	4.1	95.9	0.0	1.05	0.62	0.80	2.62	3.2	0.005	0.63	0.0	0.04	14.18	0.00	2.057	10.12	3.81	4.2	95.8	0.0	0.82	0.35	0.63	0.80	2.10	8660	1129	6	0	0	0	0	logfile
✔	7WiX	32539	2024-06-25	2022-01-05	3.53	3.90	—	3.7	0.005	0.93	1.0	0.04	14.86	0.01	2.063	10.48	0.57	10.1	89.5	0.3	-2.81	0.70	0.87	1.91	3.7	0.003	0.72	0.0	0.04	16.02	0.01	2.090	7.74	3.64	8.8	90.9	0.3	-0.20	0.54	0.68	0.86	1.50	8670	1147	4	0	3	0	0	logfile
✔	7WiV	32537	2024-06-25	2022-01-05	2.88	3.16	—	3.0	0.008	1.02	4.0	0.06	14.50	0.01	2.209	8.44	0.68	9.4	90.2	0.4	-5.21	0.69	0.88	3.24	3.0	0.003	0.69	0.0	0.04	15.03	0.00	2.221	6.62	1.70	7.5	92.4	0.1	-0.63	0.95	0.67	0.88	2.40	8646	1147	3	0	1	0	0	logfile
✔	7WiW	32538	2024-06-25	2022-01-05	3.12	3.47	—	3.4	0.006	0.99	1.0	0.05	14.75	0.01	1.891	8.72	1.03	7.1	92.3	0.6	-4.54	0.72	0.89	3.28	3.4	0.003	0.64	0.0	0.04	15.78	0.00	1.961	6.59	2.17	6.0	93.7	0.3	-0.98	0.41	0.68	0.89	2.43	8603	1137	4	0	5	0	0	logfile
✔	7QPG	14120	2024-06-25	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.89	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.4	0.002	0.65	0.0	0.04	12.90	0.00	2.133	10.06	0.97	2.7	97.3	0.0	1.29	0.79	0.88	0.75	0.32	57164	7156	6	0	0	0	0	logfile
✔	7WiT	32535	2024-06-25	2022-01-04	3.21	3.87	3.47	3.8	0.005	0.57	0.0	0.04	11.49	0.00	2.271	4.78	3.11	3.3	96.7	0.0	-0.91	0.61	0.77	2.46	3.8	0.003	0.53	0.0	0.04	13.75	0.00	2.168	5.29	3.79	2.4	97.6	0.0	1.70	0.59	0.63	0.80	1.31	8109	1133	1	0	2	0	0	logfile
✔	7WiJ	32531	2024-06-27	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.51	0.0	0.03	15.61	0.00	2.261	4.52	1.58	0.8	99.2	0.0	3.39	0.25	0.71	0.88	1.65	12396	1602	6	0	0	0	0	logfile
✔	7TDT	25838	2024-06-28	2022-01-03	4.0	4.13	—	4.0	0.002	0.57	0.0	0.04	13.40	0.00	1.908	10.09	0.00	8.2	91.7	0.1	-0.53	0.63	0.69	—	4.0	0.003	0.79	0.0	0.04	15.88	0.00	2.135	15.05	2.31	9.0	91.0	0.0	-0.94	1.33	0.64	0.72	—	14444	1818	1	0	0	0	0	logfile
✔	7WiH	32530	2024-06-26	2022-01-03	3.68	4.13	—	4.1	0.006	1.03	0.0	0.06	14.90	0.01	2.318	5.51	0.73	10.8	88.9	0.3	-6.08	0.77	0.78	2.12	4.1	0.003	0.69	0.0	0.04	14.60	0.00	2.140	8.37	4.27	10.8	89.1	0.1	-3.33	0.46	0.75	0.76	1.78	10002	1482	4	0	4	0	0	logfile
✔	7Wi6	32526	2024-06-26	2022-01-03	3.71	4.33	—	4.2	0.009	1.02	0.0	0.06	15.69	0.01	2.290	5.63	1.54	14.5	85.5	0.0	-6.21	0.76	0.78	1.96	4.2	0.003	0.62	0.0	0.04	15.74	0.00	2.218	8.03	3.85	9.0	91.0	0.0	-4.10	0.42	0.76	0.78	1.90	9696	1446	4	0	4	0	0	logfile
✔	7WiG	32529	2024-06-26	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.002	0.55	0.0	0.04	15.29	0.00	2.183	5.63	1.23	2.0	98.0	0.0	1.31	0.33	0.79	0.80	2.79	8931	1139	6	0	1	0	0	logfile
✔	7QPC	14117	2024-06-26	2022-01-03	3.44	3.64	3.38	3.7	0.004	0.62	0.0	0.04	15.00	0.00	2.199	5.74	0.00	2.5	97.5	0.0	1.61	0.59	0.79	1.03	3.7	0.003	0.55	0.0	0.04	15.50	0.00	2.108	7.50	0.18	2.9	97.1	0.0	1.29	0.31	0.57	0.80	1.52	10830	654	6	0	4	62	5540	logfile
✔	7WiC	32528	2024-06-26	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.76	0.00	2.171	7.98	3.22	3.5	96.5	0.0	1.07	0.37	0.78	0.80	3.23	9048	1158	6	0	0	0	0	logfile
✔	7QPA	14116	2024-06-26	2022-01-03	3.18	3.43	3.17	3.5	0.004	0.64	0.0	0.04	15.17	0.01	2.208	8.98	0.00	2.2	97.8	0.0	1.43	0.55	0.74	1.92	3.5	0.003	0.51	0.0	0.04	15.64	0.01	2.040	10.00	1.62	3.1	96.9	0.0	1.47	0.41	0.51	0.74	1.90	10814	654	6	0	4	64	5540	logfile
✔	7Wi8	32527	2024-06-26	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	14.72	0.01	2.315	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.003	0.71	0.0	0.04	12.39	0.00	2.161	11.53	0.00	12.3	87.7	0.0	-3.27	1.11	0.69	0.79	—	9268	1446	4	0	4	0	0	logfile
✔	7QP9	14115	2024-06-27	2022-01-03	2.89	3.12	2.88	3.2	0.004	0.63	0.0	0.04	15.53	0.00	2.249	6.44	0.00	3.6	96.4	0.0	2.00	0.58	0.81	3.64	3.2	0.004	0.50	0.0	0.04	16.52	0.00	2.123	10.43	0.54	3.3	96.7	0.0	1.97	0.72	0.56	0.83	3.78	11087	654	6	0	4	127	5668	logfile
✔	7Wi3	32520	2024-06-29	2022-01-02	4.0	3.02	—	2.9	0.010	1.15	37.0	0.07	13.94	0.01	1.363	17.43	1.47	8.1	91.9	0.0	-1.49	0.76	0.75	—	3.0	0.008	0.88	1.0	0.05	17.09	0.01	1.955	19.30	5.31	7.6	92.4	0.0	-0.18	0.64	0.76	0.75	—	69304	8688	48	0	0	0	0	logfile

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